Wall clock time and date at job start Tue Mar 31 2020 21:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47309 * 2 1 4 4 O 1.45197 * 109.47349 * 120.00471 * 2 1 3 5 5 C 1.34224 * 117.00221 * 270.00186 * 4 2 1 6 6 O 1.20829 * 119.99935 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00364 * 179.97438 * 5 4 2 8 8 C 1.53097 * 109.57843 * 299.71045 * 7 5 4 9 9 C 1.53042 * 109.29040 * 182.40234 * 8 7 5 10 10 N 1.46843 * 109.51220 * 59.18450 * 9 8 7 11 11 C 1.46899 * 110.99934 * 174.16549 * 10 9 8 12 12 C 1.52999 * 117.50146 * 243.62177 * 11 10 9 13 13 C 1.52995 * 117.50086 * 174.99578 * 11 10 9 14 14 C 1.46850 * 111.19804 * 298.25847 * 10 9 8 15 15 C 1.53034 * 109.52020 * 61.74753 * 14 10 9 16 16 C 1.50706 * 109.47113 * 240.00702 * 2 1 3 17 17 O 1.21282 * 119.99614 * 256.03025 * 16 2 1 18 18 N 1.34770 * 120.00157 * 76.02266 * 16 2 1 19 19 C 1.46502 * 120.00060 * 5.37060 * 18 16 2 20 20 C 1.46499 * 120.00008 * 185.36686 * 18 16 2 21 21 C 1.50704 * 109.47181 * 90.00151 * 20 18 16 22 22 H 1.07999 * 120.00080 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99651 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47320 * 59.99791 * 25 23 21 27 27 H 1.48500 * 109.47313 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47186 * 300.00073 * 25 23 21 29 29 H 1.08998 * 109.47211 * 186.13131 * 1 2 3 30 30 H 1.08995 * 109.46913 * 306.13264 * 1 2 3 31 31 H 1.08995 * 109.46985 * 66.13167 * 1 2 3 32 32 H 1.09006 * 109.52426 * 59.87042 * 7 5 4 33 33 H 1.08996 * 109.48838 * 62.45978 * 8 7 5 34 34 H 1.09002 * 109.50587 * 302.35175 * 8 7 5 35 35 H 1.08994 * 109.46176 * 299.17164 * 9 8 7 36 36 H 1.09001 * 109.45812 * 179.19137 * 9 8 7 37 37 H 1.09011 * 115.54993 * 29.32791 * 11 10 9 38 38 H 1.08995 * 117.49469 * 359.97438 * 12 11 10 39 39 H 1.09004 * 117.49950 * 145.01672 * 12 11 10 40 40 H 1.09007 * 117.50248 * 214.97998 * 13 11 10 41 41 H 1.08996 * 117.50374 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46430 * 181.76117 * 14 10 9 43 43 H 1.09003 * 109.46274 * 301.74281 * 14 10 9 44 44 H 1.09001 * 109.50546 * 60.76439 * 15 14 10 45 45 H 1.09004 * 109.50225 * 180.84111 * 15 14 10 46 46 H 1.08989 * 109.47226 * 84.82013 * 19 18 16 47 47 H 1.09003 * 109.46565 * 204.82227 * 19 18 16 48 48 H 1.09002 * 109.46978 * 324.81566 * 19 18 16 49 49 H 1.09007 * 109.47180 * 210.00204 * 20 18 16 50 50 H 1.08997 * 109.47254 * 329.99954 * 20 18 16 51 51 H 0.96996 * 119.99889 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2172 0.0638 2.2811 6 8 1.9982 1.2517 2.2504 7 6 2.7183 -0.5775 3.5494 8 6 1.7199 -1.6402 4.0161 9 6 2.2052 -2.2449 5.3356 10 7 2.3272 -1.1854 6.3451 11 6 2.6575 -1.7480 7.6613 12 6 1.6334 -1.5683 8.7836 13 6 2.9354 -0.7649 8.8002 14 6 3.3158 -0.1778 5.9404 15 6 2.8636 0.4884 4.6390 16 6 2.0324 -0.7103 -1.2306 17 8 2.4736 -1.8366 -1.1430 18 7 1.9912 -0.0940 -2.4284 19 6 1.5690 1.3061 -2.5177 20 6 2.3687 -0.8240 -3.6411 21 6 1.1505 -1.4915 -4.2254 22 1 0.1909 -1.3825 -3.7420 23 6 1.2608 -2.2405 -5.3778 24 7 2.4292 -2.3728 -5.9667 25 14 -0.2494 -3.0674 -6.1024 26 1 -1.2639 -2.0368 -6.4400 27 1 0.1333 -3.8075 -7.3316 28 1 -0.8181 -4.0156 -5.1111 29 1 -0.3633 -1.0218 0.1098 30 1 -0.3633 0.6059 0.8300 31 1 -0.3633 0.4158 -0.9397 32 1 3.6862 -1.0434 3.3642 33 1 1.6444 -2.4240 3.2625 34 1 0.7424 -1.1812 4.1638 35 1 3.1764 -2.7157 5.1839 36 1 1.4889 -2.9918 5.6778 37 1 3.2303 -2.6754 7.6459 38 1 0.7147 -1.0322 8.5455 39 1 1.5320 -2.3775 9.5068 40 1 3.6907 -1.0456 9.5344 41 1 2.8728 0.2992 8.5731 42 1 3.4064 0.5765 6.7220 43 1 4.2819 -0.6583 5.7857 44 1 1.9041 0.9810 4.7965 45 1 3.6050 1.2258 4.3309 46 1 2.4229 1.9559 -2.3267 47 1 1.1774 1.5044 -3.5154 48 1 0.7925 1.4993 -1.7776 49 1 2.7860 -0.1281 -4.3691 50 1 3.1135 -1.5801 -3.3931 51 1 2.5067 -2.8995 -6.7776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801872537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:39 Heat of formation + Delta-G solvation = -90.499131 kcal Electronic energy + Delta-G solvation = -29930.670418 eV Core-core repulsion = 25831.095301 eV Total energy + Delta-G solvation = -4099.575117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92779 -39.59001 -38.83244 -36.80351 -36.15205 -34.88786 -32.89433 -32.45640 -31.47994 -31.14607 -27.80234 -26.19691 -25.94283 -24.38173 -23.76077 -22.66057 -22.38999 -21.53633 -20.75132 -19.86306 -18.81010 -17.91458 -17.17363 -16.66428 -16.49086 -16.11366 -15.77760 -15.51577 -15.09603 -14.96114 -14.71244 -14.45951 -14.20886 -14.05077 -13.59939 -13.45343 -13.21018 -12.97473 -12.62865 -12.59967 -12.35845 -12.14397 -12.07145 -11.97784 -11.73817 -11.70336 -11.52031 -11.39230 -11.24172 -11.02200 -10.96972 -10.94018 -10.81811 -10.68580 -10.55574 -10.48002 -10.31230 -10.19018 -9.69041 -8.91306 -8.65389 -8.46436 -7.73073 -6.07496 -4.12958 2.16585 2.49040 3.23344 3.29778 3.30158 3.34761 3.38485 3.44730 3.87945 4.30505 4.41089 4.41845 4.53554 4.55088 4.60064 4.78295 4.83657 4.88283 4.90769 5.04241 5.06208 5.08734 5.12380 5.24944 5.26307 5.26990 5.36709 5.40997 5.50202 5.52541 5.55145 5.62674 5.68857 5.71417 5.78074 5.82059 5.85907 5.88254 6.01267 6.08522 6.24132 6.46559 6.69192 6.75535 6.97999 7.38701 7.45668 7.73777 7.88403 8.18125 8.28581 8.82524 8.97684 9.52079 11.00534 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.002087 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.112320 B =13410.331495 C =13898.541350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.101 0.899 4 O -0.324 6.324 5 C 0.466 3.534 6 O -0.510 6.510 7 C -0.080 4.080 8 C -0.109 4.109 9 C 0.062 3.938 10 N -0.513 5.513 11 C 0.005 3.995 12 C -0.163 4.163 13 C -0.180 4.180 14 C 0.057 3.943 15 C -0.100 4.100 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.597 5.597 19 C 0.074 3.926 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.046 0.954 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 5.987 26.491 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 H 0.119 0.881 4 O -0.239 6.239 5 C 0.308 3.692 6 O -0.399 6.399 7 C -0.099 4.099 8 C -0.147 4.147 9 C -0.066 4.066 10 N -0.238 5.238 11 C -0.104 4.104 12 C -0.201 4.201 13 C -0.217 4.217 14 C -0.070 4.070 15 C -0.138 4.138 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.230 5.877 26.317 26.966 hybrid contribution -0.086 -0.645 -0.733 0.980 sum -0.317 5.232 25.584 26.116 Atomic orbital electron populations 1.22150 0.92132 1.04106 1.03737 1.22660 0.96051 0.97319 0.82829 0.88094 1.86633 1.76259 1.41507 1.19550 1.23728 0.74119 0.85847 0.85461 1.90632 1.48226 1.16656 1.84357 1.21131 1.01476 0.97942 0.89399 1.21606 0.98560 0.97824 0.96694 1.22077 1.00502 0.93043 0.90968 1.61734 1.47221 1.13914 1.00887 1.22426 1.03219 0.98798 0.85960 1.23079 0.94338 1.02642 1.00037 1.23106 1.00131 0.98052 1.00415 1.22122 0.92976 0.94904 0.97009 1.21521 1.03807 0.96448 0.92049 1.19777 0.80171 0.86834 0.83806 1.90692 1.45183 1.18416 1.85355 1.48078 1.65303 1.11907 1.07732 1.21830 0.98989 0.82665 1.03535 1.19362 0.96685 0.92061 0.79179 1.21387 0.94757 1.31562 1.09187 0.92406 1.24942 0.96281 0.96126 0.96733 1.69920 1.23220 1.40406 1.19661 0.86540 0.82754 0.79625 0.78395 1.20210 1.21147 1.20136 0.90648 0.91301 0.89538 0.87490 0.89321 0.90348 0.94196 0.89868 0.88993 0.88122 0.88838 0.88716 0.88273 0.89975 0.94430 0.89941 0.90385 0.93451 0.90073 0.92250 0.94650 0.93587 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.19 37.16 0.34 -2.03 16 2 C 0.07 1.18 2.14 -27.88 -0.06 1.12 16 3 H 0.10 1.58 6.31 -51.93 -0.33 1.26 16 4 O -0.32 -5.41 9.40 -45.73 -0.43 -5.84 16 5 C 0.47 6.58 7.23 36.00 0.26 6.84 16 6 O -0.51 -7.96 15.20 -18.75 -0.28 -8.25 16 7 C -0.08 -0.85 2.69 -91.66 -0.25 -1.09 16 8 C -0.11 -1.04 5.31 -26.66 -0.14 -1.18 16 9 C 0.06 0.50 5.40 -3.83 -0.02 0.48 16 10 N -0.51 -4.20 4.81 -226.69 -1.09 -5.29 16 11 C 0.00 0.03 5.42 -67.72 -0.37 -0.33 16 12 C -0.16 -1.03 10.46 -26.73 -0.28 -1.31 16 13 C -0.18 -1.07 9.68 -26.73 -0.26 -1.33 16 14 C 0.06 0.45 5.29 -3.83 -0.02 0.43 16 15 C -0.10 -0.93 4.68 -26.65 -0.12 -1.05 16 16 C 0.51 11.02 6.95 -10.99 -0.08 10.94 16 17 O -0.52 -13.53 16.13 -13.54 -0.22 -13.75 16 18 N -0.60 -12.78 2.86 -182.95 -0.52 -13.30 16 19 C 0.07 1.18 9.79 59.85 0.59 1.76 16 20 C 0.25 6.42 5.18 -5.19 -0.03 6.39 16 21 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 25 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.20 6.33 -51.93 -0.33 0.87 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.09 0.61 8.04 -51.92 -0.42 0.19 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.61 6.92 -51.93 -0.36 0.25 16 42 H 0.08 0.57 6.41 -51.93 -0.33 0.24 16 43 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 47 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 48 H 0.06 0.80 4.92 -51.93 -0.26 0.54 16 49 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 50 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 51 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -33.77 409.18 -10.22 -43.99 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.70 Total: -0.80 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.86 Total: 6.09 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.88 Total: -44.24 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.93 Total: -27.84 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.77 -10.22 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801872537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.512 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds