Wall clock time and date at job start Tue Mar 31 2020 21:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47309 * 2 1 4 4 O 1.45197 * 109.47349 * 120.00471 * 2 1 3 5 5 C 1.34224 * 117.00221 * 270.00186 * 4 2 1 6 6 O 1.20829 * 119.99935 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00364 * 179.97438 * 5 4 2 8 8 C 1.53097 * 109.57843 * 299.71045 * 7 5 4 9 9 C 1.53042 * 109.29040 * 182.40234 * 8 7 5 10 10 N 1.46843 * 109.51220 * 59.18450 * 9 8 7 11 11 C 1.46899 * 110.99934 * 174.16549 * 10 9 8 12 12 C 1.52999 * 117.50146 * 243.62177 * 11 10 9 13 13 C 1.52995 * 117.50086 * 174.99578 * 11 10 9 14 14 C 1.46850 * 111.19804 * 298.25847 * 10 9 8 15 15 C 1.53034 * 109.52020 * 61.74753 * 14 10 9 16 16 C 1.50706 * 109.47113 * 240.00702 * 2 1 3 17 17 O 1.21282 * 119.99614 * 256.03025 * 16 2 1 18 18 N 1.34770 * 120.00157 * 76.02266 * 16 2 1 19 19 C 1.46502 * 120.00060 * 5.37060 * 18 16 2 20 20 C 1.46499 * 120.00008 * 185.36686 * 18 16 2 21 21 C 1.50704 * 109.47181 * 90.00151 * 20 18 16 22 22 H 1.07999 * 120.00080 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99651 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47320 * 59.99791 * 25 23 21 27 27 H 1.48500 * 109.47313 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47186 * 300.00073 * 25 23 21 29 29 H 1.08998 * 109.47211 * 186.13131 * 1 2 3 30 30 H 1.08995 * 109.46913 * 306.13264 * 1 2 3 31 31 H 1.08995 * 109.46985 * 66.13167 * 1 2 3 32 32 H 1.09006 * 109.52426 * 59.87042 * 7 5 4 33 33 H 1.08996 * 109.48838 * 62.45978 * 8 7 5 34 34 H 1.09002 * 109.50587 * 302.35175 * 8 7 5 35 35 H 1.08994 * 109.46176 * 299.17164 * 9 8 7 36 36 H 1.09001 * 109.45812 * 179.19137 * 9 8 7 37 37 H 1.09011 * 115.54993 * 29.32791 * 11 10 9 38 38 H 1.08995 * 117.49469 * 359.97438 * 12 11 10 39 39 H 1.09004 * 117.49950 * 145.01672 * 12 11 10 40 40 H 1.09007 * 117.50248 * 214.97998 * 13 11 10 41 41 H 1.08996 * 117.50374 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46430 * 181.76117 * 14 10 9 43 43 H 1.09003 * 109.46274 * 301.74281 * 14 10 9 44 44 H 1.09001 * 109.50546 * 60.76439 * 15 14 10 45 45 H 1.09004 * 109.50225 * 180.84111 * 15 14 10 46 46 H 1.08989 * 109.47226 * 84.82013 * 19 18 16 47 47 H 1.09003 * 109.46565 * 204.82227 * 19 18 16 48 48 H 1.09002 * 109.46978 * 324.81566 * 19 18 16 49 49 H 1.09007 * 109.47180 * 210.00204 * 20 18 16 50 50 H 1.08997 * 109.47254 * 329.99954 * 20 18 16 51 51 H 0.96996 * 119.99889 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2172 0.0638 2.2811 6 8 1.9982 1.2517 2.2504 7 6 2.7183 -0.5775 3.5494 8 6 1.7199 -1.6402 4.0161 9 6 2.2052 -2.2449 5.3356 10 7 2.3272 -1.1854 6.3451 11 6 2.6575 -1.7480 7.6613 12 6 1.6334 -1.5683 8.7836 13 6 2.9354 -0.7649 8.8002 14 6 3.3158 -0.1778 5.9404 15 6 2.8636 0.4884 4.6390 16 6 2.0324 -0.7103 -1.2306 17 8 2.4736 -1.8366 -1.1430 18 7 1.9912 -0.0940 -2.4284 19 6 1.5690 1.3061 -2.5177 20 6 2.3687 -0.8240 -3.6411 21 6 1.1505 -1.4915 -4.2254 22 1 0.1909 -1.3825 -3.7420 23 6 1.2608 -2.2405 -5.3778 24 7 2.4292 -2.3728 -5.9667 25 14 -0.2494 -3.0674 -6.1024 26 1 -1.2639 -2.0368 -6.4400 27 1 0.1333 -3.8075 -7.3316 28 1 -0.8181 -4.0156 -5.1111 29 1 -0.3633 -1.0218 0.1098 30 1 -0.3633 0.6059 0.8300 31 1 -0.3633 0.4158 -0.9397 32 1 3.6862 -1.0434 3.3642 33 1 1.6444 -2.4240 3.2625 34 1 0.7424 -1.1812 4.1638 35 1 3.1764 -2.7157 5.1839 36 1 1.4889 -2.9918 5.6778 37 1 3.2303 -2.6754 7.6459 38 1 0.7147 -1.0322 8.5455 39 1 1.5320 -2.3775 9.5068 40 1 3.6907 -1.0456 9.5344 41 1 2.8728 0.2992 8.5731 42 1 3.4064 0.5765 6.7220 43 1 4.2819 -0.6583 5.7857 44 1 1.9041 0.9810 4.7965 45 1 3.6050 1.2258 4.3309 46 1 2.4229 1.9559 -2.3267 47 1 1.1774 1.5044 -3.5154 48 1 0.7925 1.4993 -1.7776 49 1 2.7860 -0.1281 -4.3691 50 1 3.1135 -1.5801 -3.3931 51 1 2.5067 -2.8995 -6.7776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801872537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:39 Heat of formation + Delta-G solvation = -110.424524 kcal Electronic energy + Delta-G solvation = -29931.534448 eV Core-core repulsion = 25831.095301 eV Total energy + Delta-G solvation = -4100.439147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10526 -40.77731 -39.96991 -37.84817 -37.03475 -36.69411 -34.86714 -33.44495 -32.67679 -31.88437 -29.72016 -27.61272 -26.94300 -25.92606 -24.62942 -24.10077 -22.90267 -22.50360 -21.52523 -20.68628 -20.39881 -19.07130 -18.69861 -18.21604 -17.70612 -17.43693 -17.14102 -16.73842 -16.28437 -16.15089 -15.94842 -15.58176 -15.24445 -14.90951 -14.71439 -14.54466 -14.35180 -14.19530 -14.05888 -13.68858 -13.57026 -13.44710 -13.32528 -13.22809 -13.12876 -12.86882 -12.69896 -12.61872 -12.53223 -12.28934 -12.21950 -12.20337 -11.98035 -11.77437 -11.74205 -11.62441 -11.45194 -11.22827 -11.02733 -10.64970 -10.64123 -9.54062 -9.23986 -8.23568 -6.38584 1.03482 1.26715 1.37592 1.41936 1.48601 1.58502 2.31267 2.43018 2.73893 2.94051 3.06473 3.37615 3.40762 3.66420 3.66445 3.75688 3.83117 4.03468 4.08025 4.10273 4.22633 4.26741 4.27186 4.33220 4.38207 4.52325 4.56242 4.62133 4.62376 4.70469 4.78742 4.81386 4.84255 4.86642 4.92455 4.92930 5.03977 5.05790 5.10227 5.13473 5.18839 5.24693 5.33963 5.35614 5.50452 5.77047 6.02184 6.08134 6.18136 6.50245 6.63323 6.69953 7.17952 7.34693 8.83783 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.002087 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.112320 B =13410.331495 C =13898.541350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.342 6.342 5 C 0.466 3.534 6 O -0.524 6.524 7 C -0.077 4.077 8 C -0.104 4.104 9 C 0.066 3.934 10 N -0.522 5.522 11 C -0.006 4.006 12 C -0.164 4.164 13 C -0.172 4.172 14 C 0.061 3.939 15 C -0.093 4.093 16 C 0.501 3.499 17 O -0.577 6.577 18 N -0.600 5.600 19 C 0.067 3.933 20 C 0.259 3.741 21 C -0.545 4.545 22 H 0.058 0.942 23 C 0.007 3.993 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.259 1.259 27 H -0.280 1.280 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.030 0.970 50 H 0.000 1.000 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 6.904 28.069 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 H 0.136 0.864 4 O -0.258 6.258 5 C 0.310 3.690 6 O -0.413 6.413 7 C -0.096 4.096 8 C -0.142 4.142 9 C -0.062 4.062 10 N -0.247 5.247 11 C -0.115 4.115 12 C -0.202 4.202 13 C -0.209 4.209 14 C -0.066 4.066 15 C -0.131 4.131 16 C 0.288 3.712 17 O -0.457 6.457 18 N -0.333 5.333 19 C -0.075 4.075 20 C 0.138 3.862 21 C -0.584 4.584 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.567 5.567 25 Si 0.793 3.207 26 H -0.183 1.183 27 H -0.205 1.205 28 H -0.202 1.202 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.109 0.891 49 H 0.048 0.952 50 H 0.018 0.982 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.504 6.854 27.915 28.784 hybrid contribution 0.360 -0.889 -1.183 1.523 sum -1.144 5.966 26.732 27.413 Atomic orbital electron populations 1.22151 0.90008 1.04131 1.05205 1.22521 0.97376 0.96916 0.81023 0.86366 1.86653 1.76687 1.42439 1.20030 1.24410 0.73414 0.85726 0.85474 1.90614 1.48947 1.17234 1.84495 1.21282 1.01885 0.98523 0.87937 1.21554 0.98087 0.97216 0.97329 1.22026 1.00837 0.93093 0.90213 1.61718 1.47578 1.14036 1.01387 1.22500 1.04004 0.99427 0.85537 1.23106 0.94056 1.03046 0.99974 1.23158 1.00113 0.97740 0.99913 1.22097 0.93005 0.95097 0.96386 1.21476 1.03301 0.96053 0.92283 1.20638 0.79044 0.86405 0.85098 1.90653 1.47626 1.21045 1.86371 1.48067 1.64929 1.13789 1.06480 1.22145 1.00978 0.79636 1.04707 1.18868 0.95242 0.91282 0.80823 1.21666 0.95143 1.32036 1.09513 0.92334 1.25883 0.99487 0.96656 0.97174 1.70046 1.25413 1.41110 1.20132 0.85445 0.79051 0.78730 0.77463 1.18306 1.20492 1.20226 0.91639 0.88910 0.88638 0.86610 0.90160 0.90858 0.93764 0.89250 0.88511 0.89078 0.87691 0.87419 0.88450 0.88933 0.93914 0.91045 0.90253 0.90984 0.90067 0.89137 0.95216 0.98189 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.19 71.98 0.66 -3.63 16 2 C 0.08 2.63 2.14 29.85 0.06 2.70 16 3 H 0.12 3.48 6.31 -2.39 -0.02 3.46 16 4 O -0.34 -11.34 9.40 -45.16 -0.42 -11.76 16 5 C 0.47 12.77 7.23 71.23 0.52 13.29 16 6 O -0.52 -15.60 15.20 21.96 0.33 -15.27 16 7 C -0.08 -1.56 2.69 -11.47 -0.03 -1.59 16 8 C -0.10 -1.91 5.31 30.64 0.16 -1.75 16 9 C 0.07 0.99 5.40 86.33 0.47 1.46 16 10 N -0.52 -7.75 4.81 -871.12 -4.19 -11.95 16 11 C -0.01 -0.08 5.42 44.91 0.24 0.17 16 12 C -0.16 -1.81 10.46 30.59 0.32 -1.49 16 13 C -0.17 -1.70 9.68 30.59 0.30 -1.40 16 14 C 0.06 0.85 5.29 86.32 0.46 1.31 16 15 C -0.09 -1.61 4.68 30.65 0.14 -1.46 16 16 C 0.50 22.01 6.95 87.66 0.61 22.62 16 17 O -0.58 -31.31 16.13 15.22 0.25 -31.06 16 18 N -0.60 -25.92 2.86 -851.13 -2.43 -28.35 16 19 C 0.07 2.03 9.79 127.77 1.25 3.28 16 20 C 0.26 14.00 5.18 85.63 0.44 14.44 16 21 C -0.55 -31.07 9.39 25.60 0.24 -30.83 16 22 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 23 C 0.01 0.41 5.46 84.66 0.46 0.87 16 24 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 25 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.10 2.41 6.33 -2.39 -0.02 2.39 16 32 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 37 H 0.10 1.10 8.04 -2.38 -0.02 1.08 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.10 1.00 6.92 -2.39 -0.02 0.99 16 42 H 0.09 1.11 6.41 -2.39 -0.02 1.09 16 43 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 45 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 48 H 0.09 2.17 4.92 -2.39 -0.01 2.16 16 49 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 50 H 0.00 0.00 7.36 -2.39 -0.02 -0.02 16 51 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -75.02 409.18 3.05 -71.97 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.91 Total: 17.61 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 6.30 Total: 17.98 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -6.34 Total: -95.90 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: 0.15 Total: -58.09 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.02 3.05 -71.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801872537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.457 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds