Wall clock time and date at job start Tue Mar 31 2020 21:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46885 * 2 1 4 4 O 1.45196 * 109.47114 * 239.99359 * 2 1 3 5 5 C 1.34239 * 116.99525 * 90.00706 * 4 2 1 6 6 O 1.20822 * 119.99903 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99704 * 180.02562 * 5 4 2 8 8 C 1.53117 * 109.52032 * 179.97438 * 7 5 4 9 9 C 1.53044 * 109.27792 * 177.55923 * 8 7 5 10 10 N 1.46847 * 109.51335 * 300.82256 * 9 8 7 11 11 C 1.46901 * 111.00144 * 185.83239 * 10 9 8 12 12 C 1.52994 * 117.49968 * 243.62503 * 11 10 9 13 13 C 1.52997 * 117.50016 * 174.99895 * 11 10 9 14 14 C 1.46830 * 111.21086 * 61.74856 * 10 9 8 15 15 C 1.53038 * 109.51757 * 298.25173 * 14 10 9 16 16 C 1.50698 * 109.46610 * 119.99797 * 2 1 3 17 17 O 1.21285 * 120.00029 * 120.00510 * 16 2 1 18 18 N 1.34777 * 120.00168 * 299.99944 * 16 2 1 19 19 C 1.46495 * 119.99961 * 0.02562 * 18 16 2 20 20 C 1.46507 * 120.00008 * 180.02562 * 18 16 2 21 21 C 1.50693 * 109.47350 * 89.99884 * 20 18 16 22 22 H 1.07999 * 120.00090 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00327 * 180.02562 * 21 20 18 24 24 N 1.31513 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00367 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46973 * 89.99753 * 25 23 21 27 27 H 1.48495 * 109.46999 * 209.99858 * 25 23 21 28 28 H 1.48495 * 109.46977 * 329.99747 * 25 23 21 29 29 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46910 * 300.00202 * 1 2 3 31 31 H 1.09001 * 109.46914 * 60.00168 * 1 2 3 32 32 H 1.08998 * 109.52750 * 59.87133 * 7 5 4 33 33 H 1.09001 * 109.50874 * 57.62103 * 8 7 5 34 34 H 1.09002 * 109.53469 * 297.51224 * 8 7 5 35 35 H 1.09002 * 109.46396 * 60.83566 * 9 8 7 36 36 H 1.08994 * 109.46485 * 180.81491 * 9 8 7 37 37 H 1.09000 * 115.54484 * 29.33105 * 11 10 9 38 38 H 1.09003 * 117.50027 * 359.97438 * 12 11 10 39 39 H 1.09005 * 117.49808 * 145.02174 * 12 11 10 40 40 H 1.08991 * 117.50209 * 214.98143 * 13 11 10 41 41 H 1.09004 * 117.50015 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46742 * 178.23410 * 14 10 9 43 43 H 1.09004 * 109.45381 * 58.25744 * 14 10 9 44 44 H 1.08997 * 109.50308 * 299.23764 * 15 14 10 45 45 H 1.08996 * 109.53785 * 179.13596 * 15 14 10 46 46 H 1.08999 * 109.47358 * 90.00267 * 19 18 16 47 47 H 1.09007 * 109.47298 * 210.00120 * 19 18 16 48 48 H 1.09003 * 109.47329 * 329.99935 * 19 18 16 49 49 H 1.08999 * 109.46604 * 210.00132 * 20 18 16 50 50 H 1.08996 * 109.46696 * 329.99611 * 20 18 16 51 51 H 0.97002 * 119.99886 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 -1.1854 5 6 2.2173 0.0639 -2.2811 6 8 1.9976 1.2516 -2.2505 7 6 2.7184 -0.5774 -3.5493 8 6 2.8632 0.4885 -4.6390 9 6 3.4298 -0.1573 -5.9055 10 7 4.7358 -0.7588 -5.6072 11 6 5.3727 -1.2674 -6.8294 12 6 5.6176 -2.7746 -6.9238 13 6 6.7940 -1.8205 -6.7077 14 6 4.6147 -1.8181 -4.5977 15 6 4.0834 -1.2218 -3.2922 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6965 1.1193 18 7 1.7066 -0.2499 2.4546 19 6 0.8640 0.9409 2.5889 20 6 2.1953 -0.9402 3.6509 21 6 3.5227 -0.3563 4.0608 22 1 3.9589 0.4483 3.4874 23 6 4.1808 -0.8498 5.1673 24 7 3.6498 -1.8299 5.8652 25 14 5.8258 -0.1254 5.6759 26 1 5.6010 0.9990 6.6195 27 1 6.6437 -1.1724 6.3393 28 1 6.5403 0.3728 4.4733 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.0106 -1.3388 -3.8769 33 1 3.5401 1.2707 -4.2954 34 1 1.8870 0.9218 -4.8570 35 1 2.7457 -0.9300 -6.2564 36 1 3.5477 0.6017 -6.6788 37 1 5.1145 -0.7406 -7.7481 38 1 5.3065 -3.3890 -6.0788 39 1 5.5205 -3.2399 -7.9047 40 1 7.4708 -1.6581 -7.5465 41 1 7.2564 -1.8075 -5.7207 42 1 5.5929 -2.2652 -4.4211 43 1 3.9249 -2.5828 -4.9548 44 1 4.7794 -0.4665 -2.9273 45 1 3.9789 -2.0105 -2.5472 46 1 -0.1839 0.6427 2.6225 47 1 1.1217 1.4666 3.5085 48 1 1.0272 1.5997 1.7359 49 1 1.4773 -0.8149 4.4613 50 1 2.3167 -2.0014 3.4338 51 1 4.1126 -2.1769 6.6439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801872538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:42 Heat of formation + Delta-G solvation = -83.524975 kcal Electronic energy + Delta-G solvation = -30166.987334 eV Core-core repulsion = 26067.714639 eV Total energy + Delta-G solvation = -4099.272695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94292 -39.77828 -38.90960 -36.77389 -36.04946 -34.95281 -32.96957 -32.37629 -31.36385 -31.08697 -27.69513 -26.38442 -26.01101 -24.30156 -23.62306 -22.89042 -22.58877 -21.55366 -20.51852 -19.72875 -18.87635 -17.87684 -17.13583 -16.57419 -16.53527 -16.11924 -15.86906 -15.62741 -15.21781 -14.73495 -14.56490 -14.36069 -14.29148 -14.10088 -13.70210 -13.32253 -13.21531 -12.85678 -12.68229 -12.45619 -12.40289 -12.22571 -12.10332 -11.93793 -11.82079 -11.63841 -11.39261 -11.37161 -11.16007 -11.15532 -10.93599 -10.92350 -10.83070 -10.68456 -10.57765 -10.57109 -10.28229 -10.17710 -9.66123 -8.90939 -8.46569 -8.45880 -7.73842 -6.06896 -4.11833 2.17513 2.50912 3.25819 3.27130 3.29740 3.36456 3.41965 3.66142 3.87016 4.29777 4.42758 4.44461 4.50177 4.55375 4.61573 4.71048 4.80600 4.90717 4.91847 5.01666 5.03369 5.11012 5.12981 5.27052 5.27829 5.31012 5.37388 5.39537 5.49295 5.53298 5.61595 5.64784 5.65850 5.69792 5.78500 5.80563 5.83745 5.96617 5.98800 6.06444 6.21023 6.47309 6.70919 6.76550 6.97313 7.37731 7.45408 7.75053 7.89318 8.19065 8.28247 8.83729 8.98581 9.53346 11.01248 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.002561 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.666550 B =10930.372356 C =12387.999541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.324 6.324 5 C 0.466 3.534 6 O -0.510 6.510 7 C -0.078 4.078 8 C -0.101 4.101 9 C 0.060 3.940 10 N -0.509 5.509 11 C 0.022 3.978 12 C -0.221 4.221 13 C -0.171 4.171 14 C 0.055 3.945 15 C -0.112 4.112 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.529 4.529 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.036 0.964 50 H 0.045 0.955 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 2.746 -24.740 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.239 6.239 5 C 0.309 3.691 6 O -0.398 6.398 7 C -0.097 4.097 8 C -0.139 4.139 9 C -0.068 4.068 10 N -0.231 5.231 11 C -0.087 4.087 12 C -0.260 4.260 13 C -0.209 4.209 14 C -0.073 4.073 15 C -0.150 4.150 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.054 0.946 50 H 0.063 0.937 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.349 2.826 -24.352 24.743 hybrid contribution 0.353 -0.053 0.156 0.390 sum -2.996 2.773 -24.196 24.538 Atomic orbital electron populations 1.22395 0.92532 1.04020 1.04246 1.22604 0.95616 0.97670 0.83042 0.87726 1.86613 1.76320 1.41446 1.19501 1.23722 0.73958 0.85897 0.85546 1.90633 1.48265 1.16599 1.84308 1.21120 0.99327 0.99348 0.89939 1.21529 1.02279 0.97241 0.92869 1.22102 0.88877 0.98361 0.97422 1.61793 1.22081 1.31032 1.08209 1.22618 0.98622 0.93878 0.93628 1.23581 1.04715 0.94183 1.03506 1.23070 0.91211 1.03147 1.03472 1.22214 1.01240 0.92429 0.91391 1.21647 0.94020 1.01697 0.97610 1.19777 0.81689 0.85391 0.83828 1.90700 1.36928 1.26007 1.85885 1.48063 1.49827 1.28380 1.06698 1.21883 0.93928 0.88065 1.02924 1.19348 0.94363 0.93745 0.79712 1.21421 1.04833 1.19166 1.11315 0.92431 1.24932 0.97998 0.94901 0.96222 1.69929 1.39091 1.25981 1.18311 0.86482 0.83552 0.78699 0.78637 1.20598 1.21030 1.19846 0.91049 0.88897 0.91446 0.87640 0.89781 0.90350 0.94361 0.89982 0.86451 0.88109 0.88883 0.88504 0.88375 0.89838 0.93880 0.90216 0.89083 0.93035 0.90314 0.92294 0.94617 0.93653 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.18 37.16 0.34 -1.94 16 2 C 0.07 1.16 2.18 -27.88 -0.06 1.10 16 3 H 0.11 1.72 6.42 -51.93 -0.33 1.39 16 4 O -0.32 -5.43 9.35 -45.93 -0.43 -5.86 16 5 C 0.47 6.74 7.23 36.00 0.26 7.00 16 6 O -0.51 -8.17 15.20 -18.75 -0.28 -8.45 16 7 C -0.08 -0.84 2.70 -91.65 -0.25 -1.09 16 8 C -0.10 -0.96 4.68 -26.65 -0.12 -1.08 16 9 C 0.06 0.47 5.42 -3.83 -0.02 0.45 16 10 N -0.51 -4.54 4.86 -226.71 -1.10 -5.64 16 11 C 0.02 0.17 6.12 -67.72 -0.41 -0.25 16 12 C -0.22 -1.54 9.51 -26.73 -0.25 -1.79 16 13 C -0.17 -1.25 9.97 -26.73 -0.27 -1.51 16 14 C 0.05 0.50 4.09 -3.84 -0.02 0.48 16 15 C -0.11 -1.23 5.31 -26.65 -0.14 -1.37 16 16 C 0.51 10.95 7.15 -10.99 -0.08 10.88 16 17 O -0.52 -13.48 16.08 -14.11 -0.23 -13.71 16 18 N -0.60 -12.66 2.86 -182.95 -0.52 -13.18 16 19 C 0.08 1.18 8.80 59.84 0.53 1.71 16 20 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 21 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 25 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.07 4.53 -51.93 -0.24 0.84 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 37 H 0.12 0.75 7.99 -51.93 -0.41 0.33 16 38 H 0.10 0.74 5.91 -51.93 -0.31 0.43 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.80 7.55 -51.93 -0.39 0.41 16 42 H 0.08 0.75 6.49 -51.93 -0.34 0.41 16 43 H 0.04 0.36 7.35 -51.93 -0.38 -0.02 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 47 H 0.08 1.25 8.07 -51.92 -0.42 0.83 16 48 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 49 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 50 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 51 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -34.25 403.10 -10.20 -44.45 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.48 Total: -0.13 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.94 Total: 5.30 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.89 Total: -44.58 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.94 Total: -28.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.25 -10.20 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801872538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.077 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds