Wall clock time and date at job start Tue Mar 31 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46885 * 2 1 4 4 O 1.45196 * 109.47114 * 239.99359 * 2 1 3 5 5 C 1.34239 * 116.99525 * 90.00706 * 4 2 1 6 6 O 1.20822 * 119.99903 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99704 * 180.02562 * 5 4 2 8 8 C 1.53117 * 109.52032 * 179.97438 * 7 5 4 9 9 C 1.53044 * 109.27792 * 177.55923 * 8 7 5 10 10 N 1.46847 * 109.51335 * 300.82256 * 9 8 7 11 11 C 1.46901 * 111.00144 * 185.83239 * 10 9 8 12 12 C 1.52994 * 117.49968 * 243.62503 * 11 10 9 13 13 C 1.52997 * 117.50016 * 174.99895 * 11 10 9 14 14 C 1.46830 * 111.21086 * 61.74856 * 10 9 8 15 15 C 1.53038 * 109.51757 * 298.25173 * 14 10 9 16 16 C 1.50698 * 109.46610 * 119.99797 * 2 1 3 17 17 O 1.21285 * 120.00029 * 120.00510 * 16 2 1 18 18 N 1.34777 * 120.00168 * 299.99944 * 16 2 1 19 19 C 1.46495 * 119.99961 * 0.02562 * 18 16 2 20 20 C 1.46507 * 120.00008 * 180.02562 * 18 16 2 21 21 C 1.50693 * 109.47350 * 89.99884 * 20 18 16 22 22 H 1.07999 * 120.00090 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00327 * 180.02562 * 21 20 18 24 24 N 1.31513 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00367 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46973 * 89.99753 * 25 23 21 27 27 H 1.48495 * 109.46999 * 209.99858 * 25 23 21 28 28 H 1.48495 * 109.46977 * 329.99747 * 25 23 21 29 29 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46910 * 300.00202 * 1 2 3 31 31 H 1.09001 * 109.46914 * 60.00168 * 1 2 3 32 32 H 1.08998 * 109.52750 * 59.87133 * 7 5 4 33 33 H 1.09001 * 109.50874 * 57.62103 * 8 7 5 34 34 H 1.09002 * 109.53469 * 297.51224 * 8 7 5 35 35 H 1.09002 * 109.46396 * 60.83566 * 9 8 7 36 36 H 1.08994 * 109.46485 * 180.81491 * 9 8 7 37 37 H 1.09000 * 115.54484 * 29.33105 * 11 10 9 38 38 H 1.09003 * 117.50027 * 359.97438 * 12 11 10 39 39 H 1.09005 * 117.49808 * 145.02174 * 12 11 10 40 40 H 1.08991 * 117.50209 * 214.98143 * 13 11 10 41 41 H 1.09004 * 117.50015 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46742 * 178.23410 * 14 10 9 43 43 H 1.09004 * 109.45381 * 58.25744 * 14 10 9 44 44 H 1.08997 * 109.50308 * 299.23764 * 15 14 10 45 45 H 1.08996 * 109.53785 * 179.13596 * 15 14 10 46 46 H 1.08999 * 109.47358 * 90.00267 * 19 18 16 47 47 H 1.09007 * 109.47298 * 210.00120 * 19 18 16 48 48 H 1.09003 * 109.47329 * 329.99935 * 19 18 16 49 49 H 1.08999 * 109.46604 * 210.00132 * 20 18 16 50 50 H 1.08996 * 109.46696 * 329.99611 * 20 18 16 51 51 H 0.97002 * 119.99886 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 -1.1854 5 6 2.2173 0.0639 -2.2811 6 8 1.9976 1.2516 -2.2505 7 6 2.7184 -0.5774 -3.5493 8 6 2.8632 0.4885 -4.6390 9 6 3.4298 -0.1573 -5.9055 10 7 4.7358 -0.7588 -5.6072 11 6 5.3727 -1.2674 -6.8294 12 6 5.6176 -2.7746 -6.9238 13 6 6.7940 -1.8205 -6.7077 14 6 4.6147 -1.8181 -4.5977 15 6 4.0834 -1.2218 -3.2922 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6965 1.1193 18 7 1.7066 -0.2499 2.4546 19 6 0.8640 0.9409 2.5889 20 6 2.1953 -0.9402 3.6509 21 6 3.5227 -0.3563 4.0608 22 1 3.9589 0.4483 3.4874 23 6 4.1808 -0.8498 5.1673 24 7 3.6498 -1.8299 5.8652 25 14 5.8258 -0.1254 5.6759 26 1 5.6010 0.9990 6.6195 27 1 6.6437 -1.1724 6.3393 28 1 6.5403 0.3728 4.4733 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.0106 -1.3388 -3.8769 33 1 3.5401 1.2707 -4.2954 34 1 1.8870 0.9218 -4.8570 35 1 2.7457 -0.9300 -6.2564 36 1 3.5477 0.6017 -6.6788 37 1 5.1145 -0.7406 -7.7481 38 1 5.3065 -3.3890 -6.0788 39 1 5.5205 -3.2399 -7.9047 40 1 7.4708 -1.6581 -7.5465 41 1 7.2564 -1.8075 -5.7207 42 1 5.5929 -2.2652 -4.4211 43 1 3.9249 -2.5828 -4.9548 44 1 4.7794 -0.4665 -2.9273 45 1 3.9789 -2.0105 -2.5472 46 1 -0.1839 0.6427 2.6225 47 1 1.1217 1.4666 3.5085 48 1 1.0272 1.5997 1.7359 49 1 1.4773 -0.8149 4.4613 50 1 2.3167 -2.0014 3.4338 51 1 4.1126 -2.1769 6.6439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801872538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:41 Heat of formation + Delta-G solvation = -104.422958 kcal Electronic energy + Delta-G solvation = -30167.893539 eV Core-core repulsion = 26067.714639 eV Total energy + Delta-G solvation = -4100.178899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12252 -40.85832 -40.19045 -37.87624 -36.97501 -36.73665 -34.94646 -33.40927 -32.61216 -31.83649 -29.58916 -27.78862 -27.00479 -25.88071 -24.41381 -24.32979 -23.26980 -22.57573 -21.39987 -20.53540 -20.44889 -19.07197 -18.68673 -18.23599 -17.65979 -17.37640 -17.25124 -16.78842 -16.46866 -16.24583 -15.88294 -15.36531 -15.11165 -14.99363 -14.84037 -14.77308 -14.30710 -14.13006 -14.10639 -13.67711 -13.56213 -13.38737 -13.28849 -13.20551 -13.01134 -12.83702 -12.72277 -12.60592 -12.49472 -12.44261 -12.23085 -12.08614 -11.94963 -11.91047 -11.74314 -11.61000 -11.58969 -11.38840 -11.12658 -10.66412 -10.63205 -9.53904 -9.08562 -8.25691 -6.40235 1.01335 1.29723 1.35095 1.37978 1.48064 1.60129 2.29803 2.41993 2.66555 3.04279 3.08315 3.37681 3.40997 3.60307 3.65758 3.75212 3.83945 3.90305 4.04524 4.07278 4.14159 4.21156 4.27089 4.30276 4.39151 4.51364 4.60371 4.60674 4.64672 4.67427 4.71911 4.80967 4.82608 4.85187 4.91193 4.94208 5.05736 5.08004 5.08346 5.11512 5.17697 5.24143 5.26497 5.33870 5.49180 5.76106 6.01494 6.04874 6.15872 6.50296 6.63241 6.68360 7.18373 7.33895 8.81642 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.002561 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.666550 B =10930.372356 C =12387.999541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.111 0.889 4 O -0.342 6.342 5 C 0.464 3.536 6 O -0.526 6.526 7 C -0.073 4.073 8 C -0.095 4.095 9 C 0.064 3.936 10 N -0.525 5.525 11 C 0.018 3.982 12 C -0.215 4.215 13 C -0.178 4.178 14 C 0.063 3.937 15 C -0.109 4.109 16 C 0.499 3.501 17 O -0.578 6.578 18 N -0.600 5.600 19 C 0.068 3.932 20 C 0.261 3.739 21 C -0.547 4.547 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.966 3.034 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.276 1.276 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.034 0.966 50 H 0.001 0.999 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 4.143 -26.667 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 H 0.128 0.872 4 O -0.258 6.258 5 C 0.309 3.691 6 O -0.415 6.415 7 C -0.092 4.092 8 C -0.133 4.133 9 C -0.063 4.063 10 N -0.248 5.248 11 C -0.091 4.091 12 C -0.254 4.254 13 C -0.216 4.216 14 C -0.065 4.065 15 C -0.147 4.147 16 C 0.286 3.714 17 O -0.458 6.458 18 N -0.332 5.332 19 C -0.074 4.074 20 C 0.140 3.860 21 C -0.585 4.585 22 H 0.068 0.932 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.791 3.209 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.201 1.201 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.152 0.848 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.052 0.948 50 H 0.019 0.981 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.099 4.269 -26.288 26.946 hybrid contribution 0.571 -0.491 0.756 1.067 sum -3.528 3.778 -25.532 26.050 Atomic orbital electron populations 1.22400 0.89179 1.04541 1.06141 1.22507 0.97903 0.96539 0.81108 0.87152 1.86630 1.76783 1.42358 1.20005 1.24443 0.73225 0.85788 0.85684 1.90614 1.49075 1.17242 1.84524 1.21277 0.99228 1.00209 0.88476 1.21505 1.02487 0.96298 0.92999 1.22119 0.88542 0.98997 0.96687 1.61751 1.22960 1.31137 1.08917 1.22737 0.98424 0.94421 0.93493 1.23594 1.04045 0.93820 1.03950 1.23108 0.91556 1.03714 1.03241 1.22096 1.01210 0.92636 0.90547 1.21569 0.94010 1.00652 0.98473 1.20668 0.80674 0.84864 0.85185 1.90660 1.39531 1.28708 1.86878 1.48047 1.50126 1.29578 1.05443 1.22241 0.94754 0.86307 1.04079 1.18843 0.93938 0.91788 0.81457 1.21672 1.06014 1.19244 1.11594 0.93151 1.25822 1.01728 0.95187 0.96172 1.70036 1.40696 1.26989 1.18762 0.85433 0.78758 0.78437 0.78304 1.18632 1.20427 1.20101 0.91259 0.87040 0.89399 0.85310 0.91833 0.89289 0.92918 0.88450 0.84836 0.88706 0.87581 0.87272 0.89799 0.90182 0.92684 0.92296 0.90698 0.89521 0.90661 0.89468 0.94798 0.98079 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.18 71.98 0.66 -3.29 16 2 C 0.08 2.56 2.18 29.85 0.07 2.63 16 3 H 0.11 3.51 6.42 -2.39 -0.02 3.50 16 4 O -0.34 -11.51 9.35 -45.15 -0.42 -11.93 16 5 C 0.46 13.18 7.23 71.23 0.51 13.69 16 6 O -0.53 -16.31 15.20 21.98 0.33 -15.97 16 7 C -0.07 -1.51 2.70 -11.46 -0.03 -1.54 16 8 C -0.10 -1.65 4.68 30.65 0.14 -1.51 16 9 C 0.06 0.85 5.42 86.33 0.47 1.32 16 10 N -0.52 -8.61 4.86 -871.17 -4.24 -12.85 16 11 C 0.02 0.24 6.12 44.91 0.27 0.51 16 12 C -0.22 -2.61 9.51 30.59 0.29 -2.32 16 13 C -0.18 -2.40 9.97 30.59 0.31 -2.09 16 14 C 0.06 1.10 4.09 86.33 0.35 1.45 16 15 C -0.11 -2.45 5.31 30.65 0.16 -2.29 16 16 C 0.50 22.00 7.15 87.66 0.63 22.62 16 17 O -0.58 -31.59 16.08 15.75 0.25 -31.34 16 18 N -0.60 -25.77 2.86 -851.13 -2.43 -28.20 16 19 C 0.07 1.99 8.80 127.77 1.12 3.11 16 20 C 0.26 14.08 5.16 85.63 0.44 14.53 16 21 C -0.55 -31.84 9.39 25.60 0.24 -31.60 16 22 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 23 C 0.01 0.60 5.46 84.65 0.46 1.06 16 24 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 25 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.11 2.20 4.53 -2.39 -0.01 2.19 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.10 1.04 8.06 -2.39 -0.02 1.02 16 37 H 0.13 1.32 7.99 -2.39 -0.02 1.30 16 38 H 0.09 1.27 5.91 -2.39 -0.01 1.25 16 39 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.36 7.55 -2.38 -0.02 1.34 16 42 H 0.08 1.45 6.49 -2.39 -0.02 1.44 16 43 H 0.06 0.84 7.35 -2.38 -0.02 0.82 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.09 1.97 6.95 -2.39 -0.02 1.95 16 47 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 48 H 0.09 2.08 6.01 -2.39 -0.01 2.06 16 49 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 50 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 51 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -77.49 403.10 2.83 -74.66 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.92 Total: 17.60 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.10 Total: 16.29 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -6.38 Total: -96.66 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: 0.17 Total: -59.24 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.49 2.83 -74.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801872538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.763 kcal (2) G-P(sol) polarization free energy of solvation -77.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds