Wall clock time and date at job start Tue Mar 31 2020 21:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.46506 * 119.99620 * 60.00694 * 12 2 1 14 14 C 1.34770 * 120.00437 * 240.00343 * 12 2 1 15 15 O 1.21284 * 119.99858 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00085 * 180.02562 * 14 12 2 17 17 H 1.09006 * 115.51674 * 34.58082 * 16 14 12 18 18 C 1.52995 * 117.44296 * 179.97438 * 16 14 12 19 19 H 1.08996 * 119.54317 * 355.88149 * 18 16 14 20 20 C 1.54388 * 118.12277 * 200.78274 * 18 16 14 21 21 N 1.51823 * 102.87282 * 271.98259 * 20 18 16 22 22 C 1.34774 * 127.61728 * 219.45814 * 21 20 18 23 23 O 1.21509 * 120.00632 * 180.33245 * 22 21 20 24 24 O 1.34644 * 119.99557 * 0.32945 * 22 21 20 25 25 C 1.45202 * 116.99963 * 180.02562 * 24 22 21 26 26 C 1.53003 * 109.47219 * 59.99984 * 25 24 22 27 27 C 1.52994 * 109.47221 * 180.02562 * 25 24 22 28 28 C 1.52999 * 109.46933 * 300.00295 * 25 24 22 29 29 C 1.48156 * 104.54710 * 39.72589 * 21 20 18 30 30 C 1.52995 * 117.44209 * 249.24077 * 16 14 12 31 31 H 1.09008 * 119.54386 * 4.12008 * 30 16 14 32 32 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 34 34 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 35 35 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47379 * 89.99285 * 13 12 2 37 37 H 1.08997 * 109.47046 * 209.99898 * 13 12 2 38 38 H 1.09005 * 109.46584 * 329.99866 * 13 12 2 39 39 H 1.09007 * 110.40613 * 31.59787 * 20 18 16 40 40 H 1.09006 * 110.41073 * 154.02416 * 20 18 16 41 41 H 1.09000 * 109.46782 * 59.99656 * 26 25 24 42 42 H 1.08997 * 109.47016 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.46616 * 300.00210 * 26 25 24 44 44 H 1.09002 * 109.47661 * 59.99417 * 27 25 24 45 45 H 1.08999 * 109.47447 * 180.02562 * 27 25 24 46 46 H 1.09008 * 109.46636 * 299.99932 * 27 25 24 47 47 H 1.08998 * 109.47863 * 59.99838 * 28 25 24 48 48 H 1.08997 * 109.47088 * 180.02562 * 28 25 24 49 49 H 1.09005 * 109.47306 * 299.99591 * 28 25 24 50 50 H 1.09004 * 110.40373 * 201.35514 * 29 21 20 51 51 H 1.08999 * 110.40177 * 78.93058 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0857 1.1258 1.8916 16 6 3.2960 -0.7461 3.3135 17 1 3.5270 -1.8035 3.1836 18 6 4.1716 0.0529 4.2809 19 1 4.4602 1.0729 4.0272 20 6 5.0827 -0.7281 5.2522 21 7 4.1778 -0.9654 6.4479 22 6 4.5075 -0.9078 7.7534 23 8 3.6674 -1.1300 8.6028 24 8 5.7680 -0.6040 8.1166 25 6 6.0516 -0.5604 9.5400 26 6 5.7639 -1.9296 10.1594 27 6 7.5230 -0.2013 9.7561 28 6 5.1663 0.4960 10.2042 29 6 2.8559 -1.2802 5.8575 30 6 2.7214 -0.3115 4.6632 31 1 1.9297 0.4372 4.6943 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 0.7087 1.1613 -3.4844 36 1 2.4159 -2.7377 0.9715 37 1 1.6240 -2.2852 2.5001 38 1 0.6906 -2.3002 0.9846 39 1 5.4104 -1.6629 4.7973 40 1 5.9423 -0.1216 5.5378 41 1 6.3945 -2.6822 9.6861 42 1 5.9764 -1.8967 11.2280 43 1 4.7155 -2.1849 10.0054 44 1 7.7276 0.7742 9.3148 45 1 7.7360 -0.1691 10.8245 46 1 8.1539 -0.9537 9.2827 47 1 4.1179 0.2406 10.0503 48 1 5.3795 0.5290 11.2726 49 1 5.3713 1.4714 9.7630 50 1 2.0629 -1.1007 6.5836 51 1 2.8301 -2.3139 5.5130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814115317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:00 Heat of formation + Delta-G solvation = -70.401048 kcal Electronic energy + Delta-G solvation = -30027.264491 eV Core-core repulsion = 25928.560892 eV Total energy + Delta-G solvation = -4098.703599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05216 -40.11185 -38.39481 -36.90322 -35.37396 -34.44348 -33.34573 -32.76289 -29.56612 -28.81593 -27.70983 -27.66017 -26.83970 -26.10464 -25.22967 -23.37044 -21.91243 -20.50886 -20.27144 -19.61750 -18.47863 -18.02393 -16.89022 -16.72134 -16.51220 -16.23683 -15.65196 -15.22060 -14.94536 -14.54958 -14.47334 -14.32995 -13.98270 -13.64316 -13.53570 -12.94991 -12.80544 -12.68306 -12.56869 -12.44754 -12.37557 -12.32314 -12.18780 -12.09474 -11.72504 -11.67807 -11.58999 -11.56299 -11.51254 -11.07092 -10.85891 -10.75018 -10.62358 -10.40535 -10.30092 -10.20781 -10.18302 -10.01289 -9.21852 -9.12354 -9.00368 -8.45000 -7.63481 -6.09437 -4.17523 1.80076 2.65168 2.85588 3.25701 3.32385 3.33892 3.47718 3.70681 3.82363 4.35539 4.41716 4.45971 4.50559 4.56185 4.60304 4.68561 4.82539 5.07073 5.13917 5.16183 5.19307 5.22914 5.23568 5.30495 5.38283 5.42821 5.48325 5.54305 5.56084 5.61985 5.67069 5.74179 5.80573 5.96334 5.99669 6.03964 6.04538 6.11076 6.24587 6.28292 6.73676 6.79620 7.02493 7.26136 7.39088 7.48435 7.69004 7.98578 8.13495 8.16579 8.48410 8.79980 8.99626 9.49049 10.95842 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.002036 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.813533 B =13750.490683 C =13936.345355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.586 5.586 13 C 0.086 3.914 14 C 0.533 3.467 15 O -0.549 6.549 16 C -0.137 4.137 17 H 0.122 0.878 18 C -0.146 4.146 19 H 0.135 0.865 20 C 0.135 3.865 21 N -0.615 5.615 22 C 0.675 3.325 23 O -0.571 6.571 24 O -0.361 6.361 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.140 4.140 28 C -0.184 4.184 29 C 0.156 3.844 30 C -0.152 4.152 31 H 0.129 0.871 32 H 0.031 0.969 33 H 0.011 0.989 34 H 0.094 0.906 35 H 0.263 0.737 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.094 0.906 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 -6.067 22.812 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.319 3.681 15 O -0.428 6.428 16 C -0.159 4.159 17 H 0.140 0.860 18 C -0.166 4.166 19 H 0.153 0.847 20 C 0.014 3.986 21 N -0.357 5.357 22 C 0.431 3.569 23 O -0.461 6.461 24 O -0.276 6.276 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.241 4.241 29 C 0.035 3.965 30 C -0.172 4.172 31 H 0.147 0.853 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.113 0.887 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.456 -5.399 23.008 25.100 hybrid contribution 0.269 -0.569 -0.967 1.154 sum 8.724 -5.968 22.041 24.444 Atomic orbital electron populations 1.22097 0.98142 0.99420 1.00898 1.18968 0.90911 0.94499 0.79858 0.91897 1.21302 1.31824 1.13008 0.90239 0.92263 1.24905 0.94947 0.95015 0.99010 1.69880 1.36283 1.22636 1.23783 0.86480 0.78646 0.79839 0.82328 1.20610 1.19928 1.21138 1.48158 1.48395 1.11772 1.23343 1.21582 1.01655 0.83036 0.99499 1.19256 0.79199 0.86458 0.83225 1.90660 1.58421 1.16981 1.76777 1.22472 1.02963 1.00502 0.89958 0.86023 1.23572 0.91860 1.01789 0.99371 0.84703 1.22586 0.92538 1.00073 0.83421 1.48862 1.12503 1.72098 1.02226 1.17364 0.81310 0.76270 0.81943 1.90899 1.50569 1.55912 1.48703 1.86313 1.28852 1.83305 1.29131 1.22078 0.95959 0.96527 0.75563 1.22513 1.04879 0.95573 1.01042 1.21858 0.92550 1.02840 1.02517 1.22519 1.02574 0.98193 1.00792 1.21697 0.83763 0.97704 0.93333 1.23622 0.98416 1.02616 0.92500 0.85290 0.95038 0.96951 0.88753 0.92668 0.93285 0.92696 0.90798 0.89599 0.88759 0.92191 0.91170 0.89398 0.91396 0.90152 0.91461 0.89380 0.91183 0.92113 0.88736 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.11 16 2 C 0.26 6.44 2.64 -69.09 -0.18 6.26 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.94 8.37 -34.44 -0.29 -14.23 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -12.01 2.75 -175.26 -0.48 -12.49 16 13 C 0.09 1.36 9.25 59.85 0.55 1.92 16 14 C 0.53 10.45 7.46 -10.99 -0.08 10.37 16 15 O -0.55 -13.05 15.66 5.55 0.09 -12.97 16 16 C -0.14 -1.88 4.33 -91.78 -0.40 -2.27 16 17 H 0.12 1.39 7.28 -51.93 -0.38 1.01 16 18 C -0.15 -1.81 6.49 -89.20 -0.58 -2.39 16 19 H 0.14 1.89 7.80 -51.93 -0.40 1.48 16 20 C 0.13 1.36 7.13 -0.30 0.00 1.35 16 21 N -0.62 -7.05 3.39 -171.91 -0.58 -7.63 16 22 C 0.68 8.61 8.03 54.05 0.43 9.05 16 23 O -0.57 -8.24 12.15 -19.28 -0.23 -8.47 16 24 O -0.36 -4.14 9.48 -40.33 -0.38 -4.52 16 25 C 0.14 1.24 1.13 -90.62 -0.10 1.14 16 26 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 27 C -0.14 -0.92 8.85 37.15 0.33 -0.59 16 28 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 29 C 0.16 1.62 6.86 -2.41 -0.02 1.61 16 30 C -0.15 -1.81 6.84 -89.21 -0.61 -2.42 16 31 H 0.13 1.65 8.14 -51.92 -0.42 1.22 16 32 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.67 6.65 -51.93 -0.35 0.32 16 38 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 39 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.09 0.88 7.95 -51.93 -0.41 0.47 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -32.20 402.99 -8.52 -40.72 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.52 Total: 2.06 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.08 Total: 5.67 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.44 Total: -44.34 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.53 Total: -25.96 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.20 -8.52 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814115317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.677 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds