Wall clock time and date at job start Tue Mar 31 2020 21:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09005 * 115.51405 * 34.58373 * 16 14 12 18 18 C 1.52997 * 117.44588 * 179.97438 * 16 14 12 19 19 H 1.09003 * 119.53860 * 355.88092 * 18 16 14 20 20 C 1.54383 * 118.12432 * 200.79128 * 18 16 14 21 21 N 1.48141 * 104.61813 * 320.53823 * 20 18 16 22 22 C 1.34778 * 127.83745 * 140.41680 * 21 20 18 23 23 O 1.21515 * 120.00059 * 0.02562 * 22 21 20 24 24 O 1.34638 * 119.99803 * 180.02562 * 22 21 20 25 25 C 1.45202 * 116.99793 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47414 * 59.99918 * 25 24 22 27 27 C 1.52995 * 109.47182 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.47064 * 299.99702 * 25 24 22 29 29 C 1.48144 * 104.32607 * 320.41896 * 21 20 18 30 30 C 1.52999 * 117.44573 * 249.23611 * 16 14 12 31 31 H 1.09003 * 119.53737 * 4.12301 * 30 16 14 32 32 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 33 33 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 34 34 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 35 35 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 36 36 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 37 37 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 38 38 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 39 39 H 1.09003 * 110.41208 * 79.32863 * 20 18 16 40 40 H 1.09004 * 110.40514 * 201.63593 * 20 18 16 41 41 H 1.08998 * 109.46917 * 59.99862 * 26 25 24 42 42 H 1.08996 * 109.47464 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.46790 * 299.99863 * 26 25 24 44 44 H 1.09005 * 109.47391 * 59.99838 * 27 25 24 45 45 H 1.09006 * 109.47561 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47496 * 300.00151 * 27 25 24 47 47 H 1.09004 * 109.47016 * 60.00553 * 28 25 24 48 48 H 1.09004 * 109.47318 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.47381 * 300.00346 * 28 25 24 50 50 H 1.08993 * 110.40869 * 158.37162 * 29 21 20 51 51 H 1.09003 * 110.40361 * 280.79733 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 2.6150 -1.4814 -3.7422 18 6 4.1705 0.0531 -4.2815 19 1 4.3474 1.1127 -4.0963 20 6 4.2925 -0.4492 -5.7363 21 7 4.3725 -1.9236 -5.6172 22 6 3.7968 -2.8495 -6.4096 23 8 3.1166 -2.5021 -7.3548 24 8 3.9754 -4.1592 -6.1540 25 6 3.3262 -5.1001 -7.0493 26 6 3.8399 -4.8856 -8.4744 27 6 3.6410 -6.5292 -6.6029 28 6 1.8130 -4.8769 -7.0136 29 6 5.2287 -2.1496 -4.4296 30 6 4.7946 -1.0435 -3.3931 31 1 5.4363 -0.8011 -2.5459 32 1 -0.3634 0.4064 0.9439 33 1 -0.3634 0.6143 -0.8239 34 1 -0.3633 -1.0206 -0.1200 35 1 1.9161 -1.9110 3.4385 36 1 0.7376 -2.1444 -1.9993 37 1 2.4629 -2.5818 -1.9863 38 1 1.5295 -2.5968 -0.4708 39 1 3.4132 -0.1615 -6.3127 40 1 5.1961 -0.0539 -6.2003 41 1 4.9179 -5.0446 -8.4998 42 1 3.3529 -5.5922 -9.1464 43 1 3.6151 -3.8674 -8.7922 44 1 3.2747 -6.6818 -5.5876 45 1 3.1533 -7.2356 -7.2747 46 1 4.7190 -6.6886 -6.6279 47 1 1.5883 -3.8588 -7.3315 48 1 1.3256 -5.5830 -7.6861 49 1 1.4470 -5.0297 -5.9983 50 1 5.0558 -3.1448 -4.0202 51 1 6.2797 -2.0216 -4.6889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814115318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:03 Heat of formation + Delta-G solvation = -69.727978 kcal Electronic energy + Delta-G solvation = -30831.432464 eV Core-core repulsion = 26732.758052 eV Total energy + Delta-G solvation = -4098.674412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19387 -40.14947 -38.55200 -36.90336 -35.51644 -34.45453 -33.33935 -32.75590 -30.26445 -28.70932 -27.69933 -27.64585 -27.07348 -26.21671 -24.82372 -23.39864 -21.92284 -20.59581 -20.06135 -19.53514 -18.52050 -18.00636 -17.56640 -16.98920 -16.80579 -16.28957 -15.65894 -15.30641 -14.81111 -14.75346 -14.31122 -14.13784 -13.78931 -13.64506 -13.61871 -13.39777 -12.78860 -12.66432 -12.57868 -12.55314 -12.48067 -12.42979 -12.17920 -12.14637 -11.93130 -11.75341 -11.72803 -11.67762 -11.55122 -11.40957 -11.31246 -10.62890 -10.51163 -10.28585 -10.25957 -10.10456 -9.93521 -9.78722 -9.27412 -9.16263 -9.05565 -8.32776 -7.80378 -6.53058 -4.15607 1.77904 2.61242 2.84324 3.39246 3.46940 3.48422 3.60609 3.64863 3.78492 4.32579 4.42504 4.46191 4.47232 4.57716 4.61391 4.71253 4.76952 5.10517 5.13891 5.17809 5.18675 5.25238 5.25905 5.32517 5.38018 5.39717 5.49390 5.52033 5.55323 5.57394 5.66356 5.68943 5.72976 5.91727 5.96801 6.00147 6.05282 6.13129 6.22578 6.26957 6.34417 6.42908 6.58880 6.93000 7.13776 7.24901 7.41801 7.83056 8.09403 8.26599 8.31916 8.72559 8.91264 9.49608 10.82112 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.002742 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.620900 B =10208.888644 C =10917.483781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.236 3.764 3 H 0.054 0.946 4 C -0.618 4.618 5 H 0.062 0.938 6 C 0.044 3.956 7 N -0.894 5.894 8 Si 1.031 2.969 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.581 5.581 13 C 0.086 3.914 14 C 0.535 3.465 15 O -0.552 6.552 16 C -0.144 4.144 17 H 0.115 0.885 18 C -0.152 4.152 19 H 0.142 0.858 20 C 0.154 3.846 21 N -0.613 5.613 22 C 0.678 3.322 23 O -0.566 6.566 24 O -0.360 6.360 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.185 4.185 29 C 0.133 3.867 30 C -0.150 4.150 31 H 0.140 0.860 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.269 0.731 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -8.943 -22.139 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.072 0.928 4 C -0.655 4.655 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.526 5.526 8 Si 0.859 3.141 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.310 5.310 13 C -0.058 4.058 14 C 0.322 3.678 15 O -0.432 6.432 16 C -0.165 4.165 17 H 0.133 0.867 18 C -0.171 4.171 19 H 0.159 0.841 20 C 0.033 3.967 21 N -0.355 5.355 22 C 0.433 3.567 23 O -0.456 6.456 24 O -0.275 6.275 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.242 4.242 29 C 0.010 3.990 30 C -0.169 4.169 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.108 0.892 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.780 -7.242 -21.277 22.979 hybrid contribution 0.166 -1.475 -1.058 1.823 sum 4.946 -8.717 -22.335 24.480 Atomic orbital electron populations 1.22428 0.98663 1.00166 1.00149 1.19189 0.90379 0.94665 0.82332 0.92802 1.22097 1.41369 1.11164 0.90884 0.91962 1.25620 0.93192 1.05711 0.91806 1.70869 1.43601 1.06394 1.31745 0.84220 0.77691 0.76061 0.76166 1.20909 1.20185 1.20489 1.47865 1.48766 1.11716 1.22695 1.21608 0.98843 0.82898 1.02443 1.19315 0.79106 0.86395 0.82999 1.90636 1.58820 1.17009 1.76706 1.22210 0.94313 1.02586 0.97432 0.86736 1.23564 1.04207 0.98823 0.90511 0.84057 1.21852 1.03303 0.76107 0.95447 1.47434 1.52053 1.06057 1.29923 1.17287 0.78219 0.80380 0.80772 1.90910 1.42757 1.81278 1.30623 1.86316 1.70662 1.14547 1.55977 1.22095 0.92471 0.86948 0.88539 1.22515 1.01358 1.05039 0.95090 1.21863 1.02940 0.92242 1.02756 1.22529 0.93784 1.05046 1.02825 1.22472 0.94132 0.99189 0.83206 1.24280 0.94403 0.97847 1.00375 0.84259 0.91912 0.95566 0.93509 0.92066 0.93939 0.92474 0.89946 0.89069 0.89371 0.92222 0.91115 0.89426 0.91283 0.90103 0.91481 0.89407 0.91108 0.91951 0.89229 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.02 37.15 0.34 -3.10 16 2 C 0.24 5.73 2.23 -69.09 -0.15 5.58 16 3 H 0.05 1.43 5.48 -51.92 -0.28 1.15 16 4 C -0.62 -16.86 8.30 -34.44 -0.29 -17.14 16 5 H 0.06 1.80 7.38 -52.49 -0.39 1.41 16 6 C 0.04 1.23 5.20 -17.82 -0.09 1.14 16 7 N -0.89 -26.57 13.70 55.43 0.76 -25.81 16 8 Si 1.03 25.23 26.44 -169.99 -4.49 20.74 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.28 6.12 56.52 0.35 -5.93 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.58 -12.16 2.75 -175.27 -0.48 -12.64 16 13 C 0.09 1.47 8.87 59.85 0.53 2.00 16 14 C 0.54 10.69 7.46 -10.99 -0.08 10.61 16 15 O -0.55 -12.86 15.66 5.56 0.09 -12.78 16 16 C -0.14 -2.14 4.11 -91.78 -0.38 -2.51 16 17 H 0.11 1.65 7.10 -51.93 -0.37 1.28 16 18 C -0.15 -1.86 6.55 -89.20 -0.58 -2.44 16 19 H 0.14 1.82 7.80 -51.93 -0.40 1.41 16 20 C 0.15 1.60 6.95 -2.41 -0.02 1.58 16 21 N -0.61 -6.91 2.87 -172.95 -0.50 -7.41 16 22 C 0.68 8.60 8.01 54.06 0.43 9.04 16 23 O -0.57 -8.19 12.15 -19.28 -0.23 -8.43 16 24 O -0.36 -4.15 9.41 -40.32 -0.38 -4.53 16 25 C 0.14 1.28 1.13 -90.62 -0.10 1.17 16 26 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 27 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 28 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 29 C 0.13 1.29 7.03 -0.58 0.00 1.29 16 30 C -0.15 -1.79 7.16 -87.37 -0.63 -2.42 16 31 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.06 1.43 5.44 -51.93 -0.28 1.15 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 35 H 0.27 7.91 8.73 -40.82 -0.36 7.56 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.84 6.64 -51.93 -0.35 0.49 16 38 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 39 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 51 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -33.07 399.09 -7.83 -40.90 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.53 Total: 2.52 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.07 Total: 1.42 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.22 Total: -45.86 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.53 Total: -25.73 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.49 Total: 20.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.07 -7.83 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814115318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.825 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds