Wall clock time and date at job start Tue Mar 31 2020 21:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09005 * 115.51405 * 34.58373 * 16 14 12 18 18 C 1.52997 * 117.44588 * 179.97438 * 16 14 12 19 19 H 1.09003 * 119.53860 * 355.88092 * 18 16 14 20 20 C 1.54383 * 118.12432 * 200.79128 * 18 16 14 21 21 N 1.48141 * 104.61813 * 320.53823 * 20 18 16 22 22 C 1.34778 * 127.83745 * 140.41680 * 21 20 18 23 23 O 1.21515 * 120.00059 * 0.02562 * 22 21 20 24 24 O 1.34638 * 119.99803 * 180.02562 * 22 21 20 25 25 C 1.45202 * 116.99793 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47414 * 59.99918 * 25 24 22 27 27 C 1.52995 * 109.47182 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.47064 * 299.99702 * 25 24 22 29 29 C 1.48144 * 104.32607 * 320.41896 * 21 20 18 30 30 C 1.52999 * 117.44573 * 249.23611 * 16 14 12 31 31 H 1.09003 * 119.53737 * 4.12301 * 30 16 14 32 32 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 33 33 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 34 34 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 35 35 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 36 36 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 37 37 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 38 38 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 39 39 H 1.09003 * 110.41208 * 79.32863 * 20 18 16 40 40 H 1.09004 * 110.40514 * 201.63593 * 20 18 16 41 41 H 1.08998 * 109.46917 * 59.99862 * 26 25 24 42 42 H 1.08996 * 109.47464 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.46790 * 299.99863 * 26 25 24 44 44 H 1.09005 * 109.47391 * 59.99838 * 27 25 24 45 45 H 1.09006 * 109.47561 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47496 * 300.00151 * 27 25 24 47 47 H 1.09004 * 109.47016 * 60.00553 * 28 25 24 48 48 H 1.09004 * 109.47318 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.47381 * 300.00346 * 28 25 24 50 50 H 1.08993 * 110.40869 * 158.37162 * 29 21 20 51 51 H 1.09003 * 110.40361 * 280.79733 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 2.6150 -1.4814 -3.7422 18 6 4.1705 0.0531 -4.2815 19 1 4.3474 1.1127 -4.0963 20 6 4.2925 -0.4492 -5.7363 21 7 4.3725 -1.9236 -5.6172 22 6 3.7968 -2.8495 -6.4096 23 8 3.1166 -2.5021 -7.3548 24 8 3.9754 -4.1592 -6.1540 25 6 3.3262 -5.1001 -7.0493 26 6 3.8399 -4.8856 -8.4744 27 6 3.6410 -6.5292 -6.6029 28 6 1.8130 -4.8769 -7.0136 29 6 5.2287 -2.1496 -4.4296 30 6 4.7946 -1.0435 -3.3931 31 1 5.4363 -0.8011 -2.5459 32 1 -0.3634 0.4064 0.9439 33 1 -0.3634 0.6143 -0.8239 34 1 -0.3633 -1.0206 -0.1200 35 1 1.9161 -1.9110 3.4385 36 1 0.7376 -2.1444 -1.9993 37 1 2.4629 -2.5818 -1.9863 38 1 1.5295 -2.5968 -0.4708 39 1 3.4132 -0.1615 -6.3127 40 1 5.1961 -0.0539 -6.2003 41 1 4.9179 -5.0446 -8.4998 42 1 3.3529 -5.5922 -9.1464 43 1 3.6151 -3.8674 -8.7922 44 1 3.2747 -6.6818 -5.5876 45 1 3.1533 -7.2356 -7.2747 46 1 4.7190 -6.6886 -6.6279 47 1 1.5883 -3.8588 -7.3315 48 1 1.3256 -5.5830 -7.6861 49 1 1.4470 -5.0297 -5.9983 50 1 5.0558 -3.1448 -4.0202 51 1 6.2797 -2.0216 -4.6889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814115318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:02 Heat of formation + Delta-G solvation = -89.813947 kcal Electronic energy + Delta-G solvation = -30832.303457 eV Core-core repulsion = 26732.758052 eV Total energy + Delta-G solvation = -4099.545405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13999 -41.29331 -39.86367 -37.84595 -37.22961 -35.30947 -34.88690 -34.18475 -32.10292 -29.55714 -28.34952 -28.28131 -28.14233 -27.70123 -26.83316 -24.68667 -22.93627 -21.85405 -21.20539 -20.49436 -19.90725 -19.55860 -18.99047 -18.37526 -17.63086 -17.47141 -17.04412 -16.37724 -16.13612 -15.79736 -15.51843 -15.17868 -15.08708 -15.02532 -14.61754 -14.39145 -14.34540 -14.14014 -13.95764 -13.63504 -13.42513 -13.37510 -13.31599 -13.24157 -13.10846 -13.01247 -12.88135 -12.85205 -12.53424 -12.48406 -12.45323 -12.29676 -11.98053 -11.73169 -11.39697 -11.36132 -11.24785 -11.14635 -10.92609 -10.79312 -10.47985 -10.00301 -9.56733 -8.74208 -6.39453 0.95753 1.42552 1.45025 1.49171 1.68656 1.69463 2.11061 2.41901 2.59748 2.80334 2.95703 3.19496 3.58845 3.66556 3.75405 3.77119 3.81208 3.92934 3.96055 4.24779 4.30589 4.39922 4.44693 4.47824 4.54205 4.58130 4.63076 4.67193 4.69212 4.72049 4.74681 4.76301 4.78359 4.83891 4.86646 4.88263 4.89390 4.94351 5.08336 5.12196 5.21216 5.29344 5.33403 5.34392 5.44751 5.65207 5.79542 6.02777 6.36548 6.53901 6.65268 7.19463 7.20901 7.35391 8.57445 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.002742 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.620900 B =10208.888644 C =10917.483781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.236 3.764 3 H 0.032 0.968 4 C -0.613 4.613 5 H 0.035 0.965 6 C 0.001 3.999 7 N -0.922 5.922 8 Si 1.065 2.935 9 H -0.280 1.280 10 H -0.248 1.248 11 H -0.280 1.280 12 N -0.593 5.593 13 C 0.088 3.912 14 C 0.529 3.471 15 O -0.593 6.593 16 C -0.160 4.160 17 H 0.121 0.879 18 C -0.140 4.140 19 H 0.135 0.865 20 C 0.160 3.840 21 N -0.615 5.615 22 C 0.673 3.327 23 O -0.589 6.589 24 O -0.365 6.365 25 C 0.125 3.875 26 C -0.178 4.178 27 C -0.136 4.136 28 C -0.181 4.181 29 C 0.142 3.858 30 C -0.135 4.135 31 H 0.136 0.864 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.259 0.741 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.091 0.909 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -9.779 -24.330 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.132 3.868 3 H 0.050 0.950 4 C -0.651 4.651 5 H 0.054 0.946 6 C -0.200 4.200 7 N -0.557 5.557 8 Si 0.887 3.113 9 H -0.206 1.206 10 H -0.173 1.173 11 H -0.206 1.206 12 N -0.322 5.322 13 C -0.054 4.054 14 C 0.319 3.681 15 O -0.475 6.475 16 C -0.181 4.181 17 H 0.139 0.861 18 C -0.160 4.160 19 H 0.153 0.847 20 C 0.039 3.961 21 N -0.357 5.357 22 C 0.429 3.571 23 O -0.480 6.480 24 O -0.279 6.279 25 C 0.089 3.911 26 C -0.235 4.235 27 C -0.193 4.193 28 C -0.239 4.239 29 C 0.020 3.980 30 C -0.154 4.154 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.257 -8.117 -23.489 25.402 hybrid contribution 0.057 -1.286 -0.425 1.355 sum 5.314 -9.402 -23.914 26.239 Atomic orbital electron populations 1.22279 0.96692 1.01219 1.00455 1.18930 0.91803 0.93350 0.82669 0.95042 1.22223 1.40377 1.10066 0.92428 0.94638 1.26711 0.92934 1.08576 0.91821 1.70961 1.46154 1.05975 1.32569 0.83771 0.78701 0.72119 0.76668 1.20554 1.17262 1.20622 1.47927 1.49169 1.13093 1.22007 1.21714 1.00904 0.80842 1.01973 1.20101 0.77987 0.86113 0.83944 1.90602 1.60056 1.18885 1.77951 1.21993 0.96144 1.03813 0.96125 0.86121 1.23581 1.02269 0.98592 0.91512 0.84720 1.21921 1.04450 0.75812 0.93880 1.47511 1.51916 1.06176 1.30052 1.17442 0.78027 0.80854 0.80735 1.90907 1.43710 1.81702 1.31701 1.86324 1.70842 1.14179 1.56565 1.22428 0.92168 0.87715 0.88772 1.22458 1.01879 1.04032 0.95106 1.21886 1.03547 0.90783 1.03092 1.22491 0.94387 1.03995 1.02993 1.22582 0.95224 0.98378 0.81838 1.24367 0.91832 0.98712 1.00512 0.84637 0.92748 0.93682 0.92483 0.93161 0.91710 0.89945 0.91996 0.89856 0.86370 0.91718 0.89109 0.91924 0.91544 0.87946 0.90974 0.92013 0.89031 0.92310 0.88738 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 9.02 71.98 0.65 -5.73 16 2 C 0.24 11.47 2.23 44.25 0.10 11.57 16 3 H 0.03 1.69 5.48 -2.38 -0.01 1.68 16 4 C -0.61 -34.13 8.30 25.60 0.21 -33.92 16 5 H 0.04 2.12 7.38 -2.91 -0.02 2.10 16 6 C 0.00 0.07 5.20 84.66 0.44 0.51 16 7 N -0.92 -56.01 13.70 21.45 0.29 -55.71 16 8 Si 1.06 51.10 26.44 68.60 1.81 52.92 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 10 H -0.25 -10.74 6.12 99.48 0.61 -10.13 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 N -0.59 -24.69 2.75 -826.81 -2.28 -26.96 16 13 C 0.09 2.94 8.87 127.77 1.13 4.08 16 14 C 0.53 21.05 7.46 87.66 0.65 21.70 16 15 O -0.59 -27.90 15.66 -3.02 -0.05 -27.95 16 16 C -0.16 -4.54 4.11 -11.54 -0.05 -4.58 16 17 H 0.12 3.28 7.10 -2.38 -0.02 3.27 16 18 C -0.14 -3.20 6.55 -9.88 -0.06 -3.27 16 19 H 0.14 3.33 7.80 -2.39 -0.02 3.31 16 20 C 0.16 2.95 6.95 86.53 0.60 3.55 16 21 N -0.62 -12.39 2.87 -931.51 -2.68 -15.06 16 22 C 0.67 16.01 8.01 129.79 1.04 17.05 16 23 O -0.59 -16.60 12.15 19.79 0.24 -16.36 16 24 O -0.36 -7.72 9.41 -55.47 -0.52 -8.24 16 25 C 0.13 2.11 1.13 -10.79 -0.01 2.10 16 26 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 27 C -0.14 -1.51 8.85 71.98 0.64 -0.88 16 28 C -0.18 -3.21 8.37 71.98 0.60 -2.61 16 29 C 0.14 2.33 7.03 87.72 0.62 2.94 16 30 C -0.13 -2.96 7.16 -8.69 -0.06 -3.02 16 31 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.05 2.41 5.44 -2.38 -0.01 2.39 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.06 2.29 7.45 -2.39 -0.02 2.28 16 35 H 0.26 15.75 8.73 -92.71 -0.81 14.94 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.30 6.64 -2.38 -0.02 2.28 16 38 H 0.06 2.32 6.92 -2.39 -0.02 2.30 16 39 H 0.08 1.71 7.88 -2.39 -0.02 1.70 16 40 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.33 5.88 -2.38 -0.01 1.32 16 44 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 48 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 1.52 7.87 -2.39 -0.02 1.50 16 51 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.85 399.09 4.71 -69.14 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.78 Total: 20.93 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 7.10 Total: 7.31 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -4.66 Total: -97.74 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.33 Total: -52.55 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.81 Total: 52.92 kcal Total: -73.85 4.71 -69.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814115318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.676 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds