Wall clock time and date at job start Tue Mar 31 2020 21:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47513 * 2 1 4 4 C 1.50695 * 109.47420 * 119.99928 * 2 1 3 5 5 H 1.08010 * 120.00328 * 119.99612 * 4 2 1 6 6 C 1.37881 * 120.00106 * 300.00309 * 4 2 1 7 7 N 1.31508 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47178 * 89.99688 * 8 6 4 10 10 H 1.48506 * 109.46949 * 209.99596 * 8 6 4 11 11 H 1.48490 * 109.47326 * 329.99535 * 8 6 4 12 12 C 1.50705 * 109.47108 * 240.00025 * 2 1 3 13 13 O 1.21280 * 119.99875 * 274.78881 * 12 2 1 14 14 N 1.34779 * 120.00253 * 94.78637 * 12 2 1 15 15 C 1.47156 * 120.71083 * 184.41070 * 14 12 2 16 16 C 1.53888 * 108.02789 * 132.75728 * 15 14 12 17 17 H 1.09004 * 112.09176 * 181.90973 * 16 15 14 18 18 C 1.54544 * 107.83026 * 306.50195 * 16 15 14 19 19 C 1.54284 * 104.84917 * 89.07516 * 18 16 15 20 20 C 1.54557 * 104.84522 * 359.97438 * 19 18 16 21 21 H 1.09000 * 112.18203 * 146.41143 * 20 19 18 22 22 C 1.47162 * 120.70674 * 4.13355 * 14 12 2 23 23 N 1.48304 * 107.20677 * 58.36358 * 16 15 14 24 24 C 1.34784 * 128.07818 * 106.70424 * 23 16 15 25 25 O 1.21514 * 119.99601 * 359.97438 * 24 23 16 26 26 O 1.34635 * 119.99926 * 179.97438 * 24 23 16 27 27 C 1.45203 * 116.99606 * 179.97438 * 26 24 23 28 28 C 1.52996 * 109.46897 * 60.00203 * 27 26 24 29 29 C 1.53007 * 109.46663 * 180.02562 * 27 26 24 30 30 C 1.52999 * 109.47074 * 300.00102 * 27 26 24 31 31 H 1.08995 * 109.47056 * 174.99952 * 1 2 3 32 32 H 1.09002 * 109.47050 * 54.99692 * 1 2 3 33 33 H 1.08998 * 109.46691 * 294.99991 * 1 2 3 34 34 H 0.97001 * 120.00311 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.75195 * 252.39057 * 15 14 12 36 36 H 1.09003 * 109.75002 * 13.07534 * 15 14 12 37 37 H 1.09002 * 110.36355 * 207.91463 * 18 16 15 38 38 H 1.08991 * 110.36774 * 330.23569 * 18 16 15 39 39 H 1.08992 * 110.36374 * 241.15458 * 19 18 16 40 40 H 1.08997 * 110.36582 * 118.83341 * 19 18 16 41 41 H 1.09007 * 109.75243 * 346.87393 * 22 14 12 42 42 H 1.09002 * 109.74967 * 107.60582 * 22 14 12 43 43 H 1.09003 * 109.47142 * 60.00302 * 28 27 26 44 44 H 1.09005 * 109.46497 * 179.97438 * 28 27 26 45 45 H 1.09000 * 109.47522 * 299.99381 * 28 27 26 46 46 H 1.08998 * 109.46932 * 59.99974 * 29 27 26 47 47 H 1.09005 * 109.46537 * 179.97438 * 29 27 26 48 48 H 1.08994 * 109.46896 * 300.00100 * 29 27 26 49 49 H 1.08998 * 109.47109 * 59.99877 * 30 27 26 50 50 H 1.09001 * 109.46769 * 180.02562 * 30 27 26 51 51 H 1.09004 * 109.47313 * 300.00044 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5459 4.4122 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7119 12 6 2.0323 -0.7104 -1.2305 13 8 2.1518 -1.9173 -1.2276 14 7 2.3488 -0.0046 -2.3342 15 6 2.7484 -0.6882 -3.5746 16 6 1.9617 -0.0608 -4.7389 17 1 2.1837 -0.5433 -5.6908 18 6 0.4597 -0.1155 -4.3790 19 6 0.1877 1.1982 -3.6169 20 6 1.5502 1.9270 -3.5850 21 1 1.4388 3.0102 -3.6331 22 6 2.2963 1.4661 -2.3264 23 7 2.2834 1.3869 -4.7559 24 6 3.0607 2.0554 -5.6308 25 8 3.5969 1.4607 -6.5448 26 8 3.2430 3.3822 -5.4921 27 6 4.0931 4.0366 -6.4706 28 6 3.5011 3.8468 -7.8686 29 6 4.1811 5.5304 -6.1518 30 6 5.4933 3.4218 -6.4219 31 1 -0.3633 -1.0237 -0.0896 32 1 -0.3633 0.5895 -0.8418 33 1 -0.3632 0.4343 0.9314 34 1 0.7095 1.1618 3.4844 35 1 3.8177 -0.5569 -3.7395 36 1 2.5148 -1.7504 -3.5014 37 1 -0.1458 -0.1612 -5.2842 38 1 0.2538 -0.9741 -3.7401 39 1 -0.1521 0.9853 -2.6034 40 1 -0.5515 1.7984 -4.1475 41 1 1.7666 1.8111 -1.4384 42 1 3.3084 1.8708 -2.3329 43 1 2.5035 4.2848 -7.9032 44 1 4.1391 4.3385 -8.6030 45 1 3.4388 2.7825 -8.0954 46 1 4.6030 5.6652 -5.1559 47 1 4.8196 6.0216 -6.8861 48 1 3.1836 5.9686 -6.1861 49 1 5.4310 2.3575 -6.6487 50 1 6.1316 3.9134 -7.1562 51 1 5.9151 3.5570 -5.4259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870391247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:53 Heat of formation + Delta-G solvation = -99.943181 kcal Electronic energy + Delta-G solvation = -31944.681741 eV Core-core repulsion = 27844.697099 eV Total energy + Delta-G solvation = -4099.984642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25776 -40.13424 -38.10681 -36.68153 -34.29297 -33.92702 -33.60929 -31.75701 -31.39038 -30.26981 -27.60823 -27.55791 -26.63045 -25.27880 -24.78613 -23.43724 -22.22327 -21.17187 -20.30440 -19.51135 -18.73938 -17.26947 -16.74096 -16.47407 -16.34286 -16.01394 -15.58577 -15.35511 -14.83688 -14.57382 -14.38977 -14.05676 -13.72919 -13.60617 -13.54682 -13.08246 -12.75173 -12.72539 -12.63962 -12.51730 -12.32793 -12.22487 -12.08305 -12.05459 -11.60947 -11.57627 -11.46739 -11.22565 -11.18541 -11.05234 -10.90901 -10.72756 -10.63884 -10.50198 -10.41520 -10.29334 -10.07623 -10.06034 -9.14716 -9.03627 -8.63036 -8.30679 -8.02894 -6.08766 -4.12567 1.95651 2.79709 3.30013 3.36277 3.41874 3.53042 3.63891 3.74976 4.41882 4.51295 4.52996 4.56925 4.59781 4.70943 4.83082 4.85791 5.12761 5.23796 5.25354 5.25870 5.33457 5.34863 5.46971 5.48056 5.53993 5.56445 5.64769 5.66403 5.72421 5.78575 5.89290 5.90093 5.94309 6.01562 6.06665 6.09797 6.15244 6.18473 6.30418 6.39737 6.64673 6.84171 6.92424 6.99282 7.36782 7.50448 7.72451 7.91442 8.05691 8.28780 8.31682 8.91669 9.14621 9.52413 10.98027 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.003061 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.417476 B = 9144.871854 C = 9623.521002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.500 4.500 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.527 3.473 13 O -0.546 6.546 14 N -0.623 5.623 15 C 0.102 3.898 16 C 0.142 3.858 17 H 0.110 0.890 18 C -0.124 4.124 19 C -0.130 4.130 20 C 0.119 3.881 21 H 0.111 0.889 22 C 0.100 3.900 23 N -0.602 5.602 24 C 0.675 3.325 25 O -0.573 6.573 26 O -0.361 6.361 27 C 0.136 3.864 28 C -0.182 4.182 29 C -0.140 4.140 30 C -0.183 4.183 31 H 0.032 0.968 32 H 0.014 0.986 33 H 0.096 0.904 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 9.566 -18.364 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.319 3.681 13 O -0.422 6.422 14 N -0.359 5.359 15 C -0.022 4.022 16 C 0.039 3.961 17 H 0.128 0.872 18 C -0.162 4.162 19 C -0.168 4.168 20 C 0.015 3.985 21 H 0.129 0.871 22 C -0.024 4.024 23 N -0.342 5.342 24 C 0.431 3.569 25 O -0.463 6.463 26 O -0.275 6.275 27 C 0.099 3.901 28 C -0.239 4.239 29 C -0.198 4.198 30 C -0.241 4.241 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.087 0.913 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.645 8.951 -18.587 20.696 hybrid contribution 0.477 -0.240 0.720 0.897 sum 2.122 8.712 -17.867 19.991 Atomic orbital electron populations 1.21756 0.96057 0.99346 1.01741 1.18921 0.94331 0.96583 0.89124 0.93519 1.21023 1.31240 1.12442 0.89142 0.91609 1.24910 0.95018 0.95042 0.99027 1.69842 1.36807 1.22953 1.23662 0.86470 0.78477 0.80319 0.82104 1.20661 1.21162 1.19730 1.22041 0.74410 0.87822 0.83839 1.90537 1.53426 1.15285 1.82969 1.48371 1.69943 1.06015 1.11548 1.22002 0.98071 0.98441 0.83656 1.22693 0.95113 0.78799 0.99499 0.87189 1.22486 0.94063 0.99111 1.00560 1.22617 0.95706 0.95882 1.02590 1.22736 0.91568 0.99452 0.84754 0.87073 1.22210 1.00825 0.81058 0.98342 1.47943 1.48758 1.09404 1.28135 1.17390 0.78300 0.80612 0.80616 1.90883 1.52459 1.69084 1.33866 1.86314 1.66137 1.20554 1.54541 1.22052 0.89115 0.91984 0.86922 1.22509 1.01027 1.05159 0.95241 1.21855 1.03099 0.91786 1.03012 1.22515 0.94870 1.04144 1.02534 0.94850 0.96698 0.88553 0.92840 0.92085 0.88163 0.91137 0.89568 0.88858 0.91108 0.86963 0.91824 0.92267 0.91287 0.89415 0.91336 0.90257 0.91486 0.89399 0.91287 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.01 37.16 0.33 -2.58 16 2 C 0.03 0.74 2.00 -92.92 -0.19 0.56 16 3 H 0.05 1.11 5.88 -51.93 -0.31 0.80 16 4 C -0.50 -13.77 8.32 -34.44 -0.29 -14.05 16 5 H 0.07 1.92 7.25 -52.48 -0.38 1.54 16 6 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 7 N -0.89 -24.14 11.29 55.43 0.63 -23.52 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.53 11.59 6.69 -10.98 -0.07 11.52 16 13 O -0.55 -13.80 15.60 5.56 0.09 -13.71 16 14 N -0.62 -10.81 2.26 -171.83 -0.39 -11.20 16 15 C 0.10 1.57 5.88 -3.22 -0.02 1.56 16 16 C 0.14 1.84 4.12 -65.66 -0.27 1.57 16 17 H 0.11 1.36 7.93 -51.93 -0.41 0.95 16 18 C -0.12 -1.48 6.18 -25.25 -0.16 -1.64 16 19 C -0.13 -1.54 6.19 -25.24 -0.16 -1.69 16 20 C 0.12 1.47 4.13 -65.90 -0.27 1.20 16 21 H 0.11 1.21 7.92 -51.93 -0.41 0.80 16 22 C 0.10 1.48 5.64 -3.48 -0.02 1.46 16 23 N -0.60 -8.03 2.75 -158.97 -0.44 -8.47 16 24 C 0.67 9.58 8.02 54.06 0.43 10.02 16 25 O -0.57 -9.00 12.19 -19.28 -0.24 -9.24 16 26 O -0.36 -4.61 9.46 -40.31 -0.38 -4.99 16 27 C 0.14 1.41 1.13 -90.62 -0.10 1.30 16 28 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 29 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 30 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.01 0.27 5.95 -51.93 -0.31 -0.04 16 33 H 0.10 2.37 5.95 -51.93 -0.31 2.06 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.62 7.15 -51.93 -0.37 1.25 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.16 7.84 -51.93 -0.41 0.75 16 39 H 0.09 1.24 5.63 -51.93 -0.29 0.95 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.11 1.74 5.53 -51.92 -0.29 1.45 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -31.17 387.41 -8.13 -39.30 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.30 Total: 2.72 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 0.08 Total: 6.97 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.20 Total: -43.18 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.53 Total: -27.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.17 -8.13 -39.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870391247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.645 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds