Wall clock time and date at job start Tue Mar 31 2020 21:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47513 * 2 1 4 4 C 1.50695 * 109.47420 * 119.99928 * 2 1 3 5 5 H 1.08010 * 120.00328 * 119.99612 * 4 2 1 6 6 C 1.37881 * 120.00106 * 300.00309 * 4 2 1 7 7 N 1.31508 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47178 * 89.99688 * 8 6 4 10 10 H 1.48506 * 109.46949 * 209.99596 * 8 6 4 11 11 H 1.48490 * 109.47326 * 329.99535 * 8 6 4 12 12 C 1.50705 * 109.47108 * 240.00025 * 2 1 3 13 13 O 1.21280 * 119.99875 * 274.78881 * 12 2 1 14 14 N 1.34779 * 120.00253 * 94.78637 * 12 2 1 15 15 C 1.47156 * 120.71083 * 184.41070 * 14 12 2 16 16 C 1.53888 * 108.02789 * 132.75728 * 15 14 12 17 17 H 1.09004 * 112.09176 * 181.90973 * 16 15 14 18 18 C 1.54544 * 107.83026 * 306.50195 * 16 15 14 19 19 C 1.54284 * 104.84917 * 89.07516 * 18 16 15 20 20 C 1.54557 * 104.84522 * 359.97438 * 19 18 16 21 21 H 1.09000 * 112.18203 * 146.41143 * 20 19 18 22 22 C 1.47162 * 120.70674 * 4.13355 * 14 12 2 23 23 N 1.48304 * 107.20677 * 58.36358 * 16 15 14 24 24 C 1.34784 * 128.07818 * 106.70424 * 23 16 15 25 25 O 1.21514 * 119.99601 * 359.97438 * 24 23 16 26 26 O 1.34635 * 119.99926 * 179.97438 * 24 23 16 27 27 C 1.45203 * 116.99606 * 179.97438 * 26 24 23 28 28 C 1.52996 * 109.46897 * 60.00203 * 27 26 24 29 29 C 1.53007 * 109.46663 * 180.02562 * 27 26 24 30 30 C 1.52999 * 109.47074 * 300.00102 * 27 26 24 31 31 H 1.08995 * 109.47056 * 174.99952 * 1 2 3 32 32 H 1.09002 * 109.47050 * 54.99692 * 1 2 3 33 33 H 1.08998 * 109.46691 * 294.99991 * 1 2 3 34 34 H 0.97001 * 120.00311 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.75195 * 252.39057 * 15 14 12 36 36 H 1.09003 * 109.75002 * 13.07534 * 15 14 12 37 37 H 1.09002 * 110.36355 * 207.91463 * 18 16 15 38 38 H 1.08991 * 110.36774 * 330.23569 * 18 16 15 39 39 H 1.08992 * 110.36374 * 241.15458 * 19 18 16 40 40 H 1.08997 * 110.36582 * 118.83341 * 19 18 16 41 41 H 1.09007 * 109.75243 * 346.87393 * 22 14 12 42 42 H 1.09002 * 109.74967 * 107.60582 * 22 14 12 43 43 H 1.09003 * 109.47142 * 60.00302 * 28 27 26 44 44 H 1.09005 * 109.46497 * 179.97438 * 28 27 26 45 45 H 1.09000 * 109.47522 * 299.99381 * 28 27 26 46 46 H 1.08998 * 109.46932 * 59.99974 * 29 27 26 47 47 H 1.09005 * 109.46537 * 179.97438 * 29 27 26 48 48 H 1.08994 * 109.46896 * 300.00100 * 29 27 26 49 49 H 1.08998 * 109.47109 * 59.99877 * 30 27 26 50 50 H 1.09001 * 109.46769 * 180.02562 * 30 27 26 51 51 H 1.09004 * 109.47313 * 300.00044 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5459 4.4122 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7119 12 6 2.0323 -0.7104 -1.2305 13 8 2.1518 -1.9173 -1.2276 14 7 2.3488 -0.0046 -2.3342 15 6 2.7484 -0.6882 -3.5746 16 6 1.9617 -0.0608 -4.7389 17 1 2.1837 -0.5433 -5.6908 18 6 0.4597 -0.1155 -4.3790 19 6 0.1877 1.1982 -3.6169 20 6 1.5502 1.9270 -3.5850 21 1 1.4388 3.0102 -3.6331 22 6 2.2963 1.4661 -2.3264 23 7 2.2834 1.3869 -4.7559 24 6 3.0607 2.0554 -5.6308 25 8 3.5969 1.4607 -6.5448 26 8 3.2430 3.3822 -5.4921 27 6 4.0931 4.0366 -6.4706 28 6 3.5011 3.8468 -7.8686 29 6 4.1811 5.5304 -6.1518 30 6 5.4933 3.4218 -6.4219 31 1 -0.3633 -1.0237 -0.0896 32 1 -0.3633 0.5895 -0.8418 33 1 -0.3632 0.4343 0.9314 34 1 0.7095 1.1618 3.4844 35 1 3.8177 -0.5569 -3.7395 36 1 2.5148 -1.7504 -3.5014 37 1 -0.1458 -0.1612 -5.2842 38 1 0.2538 -0.9741 -3.7401 39 1 -0.1521 0.9853 -2.6034 40 1 -0.5515 1.7984 -4.1475 41 1 1.7666 1.8111 -1.4384 42 1 3.3084 1.8708 -2.3329 43 1 2.5035 4.2848 -7.9032 44 1 4.1391 4.3385 -8.6030 45 1 3.4388 2.7825 -8.0954 46 1 4.6030 5.6652 -5.1559 47 1 4.8196 6.0216 -6.8861 48 1 3.1836 5.9686 -6.1861 49 1 5.4310 2.3575 -6.6487 50 1 6.1316 3.9134 -7.1562 51 1 5.9151 3.5570 -5.4259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870391247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:52 Heat of formation + Delta-G solvation = -117.279676 kcal Electronic energy + Delta-G solvation = -31945.433508 eV Core-core repulsion = 27844.697099 eV Total energy + Delta-G solvation = -4100.736409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40086 -41.27641 -39.62724 -37.74002 -35.85835 -35.36857 -34.88676 -33.10589 -32.42024 -32.02424 -28.33997 -28.26157 -27.96302 -27.26731 -26.02979 -24.64443 -23.77071 -22.21241 -21.37227 -20.84051 -19.83756 -18.64125 -18.42735 -17.70899 -17.58263 -17.26509 -16.88131 -16.86729 -16.22603 -15.86442 -15.43539 -15.21742 -15.07320 -14.76538 -14.72620 -14.49681 -14.34707 -13.88274 -13.73951 -13.59088 -13.34506 -13.27698 -13.06810 -12.96268 -12.90273 -12.83491 -12.66336 -12.59300 -12.51935 -12.46362 -12.26286 -12.22848 -12.14895 -12.10906 -11.90757 -11.43829 -11.36970 -11.08945 -11.00555 -10.61394 -10.44077 -10.11111 -9.41263 -8.15174 -6.25548 0.96076 1.40177 1.42089 1.52702 1.70195 1.91694 2.08256 2.45545 2.76941 3.14155 3.42746 3.56322 3.73009 3.78143 3.78657 3.84574 3.97637 4.00737 4.12708 4.25732 4.33473 4.43440 4.52960 4.59429 4.62883 4.64215 4.68018 4.72663 4.77233 4.79443 4.82985 4.86852 4.90817 4.91063 4.98171 5.05370 5.06612 5.16132 5.20441 5.30537 5.35365 5.40560 5.45429 5.47162 5.57349 5.72828 5.97051 6.20203 6.42806 6.55761 6.78373 7.23133 7.37347 7.47486 8.89734 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.003061 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.417476 B = 9144.871854 C = 9623.521002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.030 3.970 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.037 0.963 6 C 0.027 3.973 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.283 1.283 12 C 0.529 3.471 13 O -0.588 6.588 14 N -0.611 5.611 15 C 0.103 3.897 16 C 0.149 3.851 17 H 0.120 0.880 18 C -0.120 4.120 19 C -0.126 4.126 20 C 0.128 3.872 21 H 0.135 0.865 22 C 0.096 3.904 23 N -0.602 5.602 24 C 0.673 3.327 25 O -0.591 6.591 26 O -0.364 6.364 27 C 0.124 3.876 28 C -0.177 4.177 29 C -0.135 4.135 30 C -0.180 4.180 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.266 0.734 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 11.811 -19.662 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.009 3.991 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.055 0.945 6 C -0.173 4.173 7 N -0.542 5.542 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.208 1.208 12 C 0.320 3.680 13 O -0.468 6.468 14 N -0.345 5.345 15 C -0.021 4.021 16 C 0.046 3.954 17 H 0.138 0.862 18 C -0.158 4.158 19 C -0.164 4.164 20 C 0.024 3.976 21 H 0.153 0.847 22 C -0.028 4.028 23 N -0.343 5.343 24 C 0.429 3.571 25 O -0.483 6.483 26 O -0.279 6.279 27 C 0.088 3.912 28 C -0.234 4.234 29 C -0.192 4.192 30 C -0.237 4.237 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.121 0.879 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.111 0.889 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.245 11.256 -19.912 22.907 hybrid contribution 0.681 -0.886 1.065 1.544 sum 1.926 10.370 -18.847 21.597 Atomic orbital electron populations 1.21569 0.95001 0.98837 1.02215 1.18843 0.95203 0.96190 0.88867 0.93396 1.21165 1.31958 1.12297 0.91388 0.94460 1.25479 0.95115 0.95703 1.01044 1.69902 1.36689 1.23233 1.24410 0.85681 0.78551 0.78695 0.79489 1.19846 1.19849 1.20796 1.21667 0.74527 0.87197 0.84567 1.90510 1.55567 1.16896 1.83832 1.48228 1.68171 1.07164 1.10976 1.22092 0.98269 0.98095 0.83640 1.22619 0.95451 0.78808 0.98531 0.86249 1.22462 0.93342 0.98635 1.01350 1.22609 0.95797 0.95985 1.02042 1.22743 0.91206 1.00749 0.82858 0.84714 1.22378 1.01415 0.79128 0.99834 1.47975 1.48718 1.09379 1.28206 1.17520 0.78026 0.81115 0.80439 1.90885 1.53044 1.69643 1.34680 1.86325 1.66530 1.19605 1.55403 1.22439 0.88546 0.93282 0.86923 1.22450 1.01869 1.03644 0.95423 1.21880 1.04006 0.89668 1.03652 1.22477 0.95642 1.02644 1.02979 0.96368 0.92902 0.90662 0.92424 0.92543 0.89204 0.88747 0.91231 0.90321 0.88423 0.87460 0.91706 0.91756 0.89068 0.92032 0.91542 0.87903 0.90933 0.92147 0.88935 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 9.01 71.98 0.65 -4.64 16 2 C 0.03 1.45 2.00 -12.29 -0.02 1.42 16 3 H 0.05 2.29 5.88 -2.38 -0.01 2.28 16 4 C -0.53 -30.00 8.32 25.60 0.21 -29.78 16 5 H 0.04 2.28 7.25 -2.91 -0.02 2.25 16 6 C 0.03 1.45 5.29 84.66 0.45 1.89 16 7 N -0.90 -48.73 11.29 21.45 0.24 -48.49 16 8 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 C 0.53 23.85 6.69 87.66 0.59 24.44 16 13 O -0.59 -30.92 15.60 -3.03 -0.05 -30.97 16 14 N -0.61 -21.32 2.26 -815.94 -1.85 -23.16 16 15 C 0.10 3.18 5.88 86.55 0.51 3.69 16 16 C 0.15 3.68 4.12 45.47 0.19 3.87 16 17 H 0.12 2.80 7.93 -2.38 -0.02 2.78 16 18 C -0.12 -2.64 6.18 31.55 0.20 -2.44 16 19 C -0.13 -2.66 6.19 31.56 0.20 -2.46 16 20 C 0.13 2.88 4.13 45.30 0.19 3.07 16 21 H 0.14 2.49 7.92 -2.39 -0.02 2.47 16 22 C 0.10 2.75 5.64 86.39 0.49 3.24 16 23 N -0.60 -15.03 2.75 -887.28 -2.44 -17.47 16 24 C 0.67 18.15 8.02 129.79 1.04 19.19 16 25 O -0.59 -18.19 12.19 19.79 0.24 -17.95 16 26 O -0.36 -8.60 9.46 -55.45 -0.52 -9.13 16 27 C 0.12 2.30 1.13 -10.79 -0.01 2.29 16 28 C -0.18 -3.06 8.37 71.98 0.60 -2.46 16 29 C -0.14 -1.66 8.85 71.98 0.64 -1.03 16 30 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.90 5.95 -2.39 -0.01 1.89 16 33 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16 34 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 2.99 7.15 -2.39 -0.02 2.98 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.81 7.84 -2.39 -0.02 1.79 16 39 H 0.08 1.92 5.63 -2.39 -0.01 1.91 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 3.23 5.53 -2.38 -0.01 3.22 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 50 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -68.87 387.41 5.08 -63.78 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.93 Total: 19.96 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 6.50 Total: 17.41 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.04 Total: -89.12 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -0.33 Total: -58.04 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.87 5.08 -63.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870391247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.497 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds