Wall clock time and date at job start Tue Mar 31 2020 21:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99784 * 2 1 4 4 O 1.20822 * 120.00019 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99642 * 179.97438 * 3 2 1 6 6 C 1.54102 * 111.69271 * 298.58403 * 5 3 2 7 7 C 1.54889 * 104.15772 * 261.43314 * 6 5 3 8 8 C 1.54826 * 102.73863 * 321.54595 * 7 6 5 9 9 C 1.54270 * 104.42487 * 37.79770 * 8 7 6 10 10 H 1.09000 * 111.87736 * 99.06999 * 9 8 7 11 11 N 1.47919 * 108.70707 * 222.44842 * 9 8 7 12 12 C 1.46902 * 111.00161 * 260.04929 * 11 9 8 13 13 H 1.08993 * 109.47273 * 182.26893 * 12 11 9 14 14 C 1.53001 * 109.46933 * 62.26544 * 12 11 9 15 15 C 1.50701 * 109.46989 * 302.26822 * 12 11 9 16 16 O 1.21282 * 119.99861 * 359.97438 * 15 12 11 17 17 N 1.34774 * 120.00042 * 179.97438 * 15 12 11 18 18 C 1.46510 * 119.99995 * 0.02562 * 17 15 12 19 19 C 1.46500 * 120.00273 * 179.97438 * 17 15 12 20 20 C 1.50695 * 109.47109 * 270.00155 * 19 17 15 21 21 H 1.07995 * 120.00496 * 359.97438 * 20 19 17 22 22 C 1.37880 * 119.99572 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.48487 * 105.98920 * 139.43325 * 11 9 8 29 29 C 1.54441 * 111.71834 * 61.01251 * 5 3 2 30 30 H 1.08994 * 109.47839 * 300.00838 * 1 2 3 31 31 H 1.09005 * 109.46938 * 60.01185 * 1 2 3 32 32 H 1.08999 * 109.46995 * 180.02562 * 1 2 3 33 33 H 1.08998 * 110.49607 * 20.09799 * 6 5 3 34 34 H 1.09000 * 110.49758 * 142.76271 * 6 5 3 35 35 H 1.08995 * 110.76273 * 79.86138 * 7 6 5 36 36 H 1.09002 * 110.75766 * 203.05242 * 7 6 5 37 37 H 1.09004 * 110.44043 * 156.53527 * 8 7 6 38 38 H 1.09000 * 110.43958 * 278.93627 * 8 7 6 39 39 H 1.09004 * 109.47016 * 60.00142 * 14 12 11 40 40 H 1.08997 * 109.46943 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47311 * 300.00217 * 14 12 11 42 42 H 1.08996 * 109.46959 * 270.00194 * 18 17 15 43 43 H 1.09001 * 109.46865 * 29.99917 * 18 17 15 44 44 H 1.08994 * 109.46989 * 149.99905 * 18 17 15 45 45 H 1.09002 * 109.47129 * 149.99989 * 19 17 15 46 46 H 1.08998 * 109.46845 * 30.00795 * 19 17 15 47 47 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 48 48 H 1.08998 * 110.66857 * 79.22446 * 28 11 9 49 49 H 1.09002 * 110.66487 * 202.18835 * 28 11 9 50 50 H 1.09003 * 110.72491 * 341.47018 * 29 5 3 51 51 H 1.09004 * 110.72077 * 218.19670 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1705 0.6208 1.2583 7 6 4.4560 1.8128 2.2052 8 6 4.9555 2.9092 1.2328 9 6 4.0823 2.7327 -0.0266 10 1 3.2583 3.4458 -0.0528 11 7 4.9432 2.8605 -1.2226 12 6 4.8288 4.2008 -1.8129 13 1 5.4408 4.2548 -2.7132 14 6 5.3120 5.2451 -0.8044 15 6 3.3894 4.4726 -2.1668 16 8 2.5424 3.6323 -1.9493 17 7 3.0434 5.6495 -2.7252 18 6 4.0667 6.6643 -2.9885 19 6 1.6442 5.9135 -3.0698 20 6 1.3789 5.4540 -4.4802 21 1 2.1732 5.0101 -5.0620 22 6 0.1221 5.6003 -5.0280 23 7 -0.8450 6.1414 -4.3198 24 14 -0.2070 5.0301 -6.7761 25 1 0.0626 3.5734 -6.8807 26 1 0.6802 5.7661 -7.7123 27 1 -1.6256 5.2967 -7.1250 28 6 4.4793 1.8189 -2.1737 29 6 4.1739 0.6102 -1.2541 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.4553 -0.0648 1.7129 34 1 5.0954 0.1000 1.0108 35 1 3.5447 2.1312 2.7112 36 1 5.2282 1.5542 2.9298 37 1 4.8051 3.8986 1.6649 38 1 6.0077 2.7552 0.9935 39 1 6.3531 5.0485 -0.5484 40 1 5.2266 6.2397 -1.2422 41 1 4.7000 5.1912 0.0960 42 1 4.1662 7.3141 -2.1191 43 1 5.0203 6.1755 -3.1878 44 1 3.7749 7.2583 -3.8546 45 1 1.4466 6.9827 -2.9928 46 1 0.9927 5.3733 -2.3829 47 1 -0.6742 6.4372 -3.4119 48 1 3.5778 2.1453 -2.6922 49 1 5.2649 1.5731 -2.8883 50 1 3.4528 -0.0590 -1.7236 51 1 5.0901 0.0760 -1.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880179317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:22 Heat of formation + Delta-G solvation = -122.893068 kcal Electronic energy + Delta-G solvation = -32931.487867 eV Core-core repulsion = 28830.508044 eV Total energy + Delta-G solvation = -4100.979823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53793 -41.20982 -39.66532 -37.45706 -36.92964 -36.10372 -35.12398 -33.99547 -31.22890 -29.35202 -28.98133 -28.38650 -27.75068 -27.34316 -25.53522 -24.02291 -23.39009 -22.37364 -21.66773 -20.60079 -19.82369 -19.07241 -18.55638 -18.17202 -17.79706 -17.43454 -17.18719 -16.52335 -16.02116 -15.86992 -15.72041 -15.49409 -15.14187 -15.03557 -14.85144 -14.53046 -14.29635 -14.04657 -13.98946 -13.65249 -13.51222 -13.29277 -13.22781 -13.16617 -12.94672 -12.86974 -12.55067 -12.46787 -12.30225 -12.10880 -12.07719 -12.01842 -11.88453 -11.85997 -11.75851 -11.58976 -11.40127 -11.20319 -11.18532 -11.01992 -10.68401 -9.42460 -9.34053 -8.74665 -6.51561 1.21423 1.41609 1.51443 1.65972 1.70825 1.78833 2.28925 2.48441 2.87229 3.03791 3.21207 3.45389 3.62072 3.71332 3.92437 4.01592 4.13502 4.15163 4.15798 4.20596 4.28481 4.30453 4.32958 4.49794 4.52418 4.54528 4.55240 4.64965 4.72409 4.74199 4.76696 4.80289 4.85723 4.89452 4.93521 4.96778 4.98608 5.07236 5.12474 5.19255 5.21547 5.27474 5.36619 5.44462 5.53591 5.76029 5.77483 5.91253 6.08170 6.36905 6.69497 6.77024 7.25662 7.43296 8.57911 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.004627 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.457089 B = 6049.884620 C = 7416.267031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.522 6.522 5 C -0.063 4.063 6 C -0.097 4.097 7 C -0.123 4.123 8 C -0.102 4.102 9 C 0.069 3.931 10 H 0.053 0.947 11 N -0.462 5.462 12 C 0.060 3.940 13 H 0.122 0.878 14 C -0.144 4.144 15 C 0.458 3.542 16 O -0.560 6.560 17 N -0.608 5.608 18 C 0.078 3.922 19 C 0.253 3.747 20 C -0.611 4.611 21 H 0.044 0.956 22 C -0.034 4.034 23 N -0.931 5.931 24 Si 1.119 2.881 25 H -0.282 1.282 26 H -0.257 1.257 27 H -0.278 1.278 28 C 0.012 3.988 29 C -0.094 4.094 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.045 0.955 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.011 0.989 46 H -0.019 1.019 47 H 0.252 0.748 48 H 0.028 0.972 49 H 0.103 0.897 50 H 0.066 0.934 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.259 -10.784 11.315 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.409 6.409 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.161 4.161 8 C -0.140 4.140 9 C -0.039 4.039 10 H 0.071 0.929 11 N -0.183 5.183 12 C -0.053 4.053 13 H 0.140 0.860 14 C -0.201 4.201 15 C 0.246 3.754 16 O -0.439 6.439 17 N -0.340 5.340 18 C -0.064 4.064 19 C 0.130 3.870 20 C -0.650 4.650 21 H 0.062 0.938 22 C -0.232 4.232 23 N -0.568 5.568 24 Si 0.940 3.060 25 H -0.208 1.208 26 H -0.182 1.182 27 H -0.203 1.203 28 C -0.116 4.116 29 C -0.132 4.132 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.079 0.921 45 H 0.029 0.971 46 H -0.001 1.001 47 H 0.061 0.939 48 H 0.046 0.954 49 H 0.121 0.879 50 H 0.084 0.916 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.984 -11.064 10.411 22.787 hybrid contribution -1.247 0.869 0.676 1.664 sum 15.737 -10.195 11.086 21.783 Atomic orbital electron populations 1.23425 0.75750 1.05557 1.01382 1.86432 1.24067 1.32906 1.84394 1.24005 0.92804 0.81014 0.71617 1.90743 1.67716 1.37634 1.44839 1.21813 0.85000 0.98528 1.01126 1.22523 1.01946 0.97571 0.91419 1.22562 1.01308 0.94586 0.97637 1.22447 1.00591 0.98782 0.92143 1.23105 0.94419 0.93925 0.92478 0.92910 1.65487 1.47143 1.01179 1.04540 1.22086 0.89753 0.92456 1.00989 0.85995 1.22074 1.03250 0.97486 0.97273 1.22633 0.93583 0.81611 0.77588 1.90739 1.53584 1.45243 1.54369 1.48092 1.08926 1.16887 1.60099 1.22077 0.91235 0.91550 1.01489 1.18716 0.79793 0.93902 0.94574 1.22486 0.98853 1.44086 0.99550 0.93766 1.27436 0.92085 0.94190 1.09455 1.70925 1.34973 1.39893 1.11015 0.82929 0.76801 0.76352 0.69947 1.20775 1.18192 1.20320 1.23534 0.99724 0.92081 0.96239 1.22618 1.01925 0.96379 0.92265 0.92251 0.94541 0.83977 0.90824 0.86678 0.93591 0.87628 0.92057 0.87874 0.87801 0.89709 0.93709 0.90858 0.88425 0.92121 0.97145 1.00104 0.93921 0.95363 0.87877 0.91557 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.56 113.37 1.20 2.10 16 2 O -0.36 -11.52 10.26 -51.46 -0.53 -12.05 16 3 C 0.46 17.24 6.49 71.24 0.46 17.71 16 4 O -0.52 -25.06 13.72 27.95 0.38 -24.68 16 5 C -0.06 -1.80 0.81 -51.50 -0.04 -1.85 16 6 C -0.10 -1.88 5.96 31.61 0.19 -1.69 16 7 C -0.12 -2.29 6.90 31.86 0.22 -2.07 16 8 C -0.10 -2.20 5.48 31.65 0.17 -2.02 16 9 C 0.07 2.12 1.36 45.72 0.06 2.18 16 10 H 0.05 2.24 4.29 -2.39 -0.01 2.23 16 11 N -0.46 -12.93 4.79 -833.75 -3.99 -16.92 16 12 C 0.06 1.77 2.05 44.17 0.09 1.86 16 13 H 0.12 3.13 7.40 -2.39 -0.02 3.12 16 14 C -0.14 -3.24 8.29 71.98 0.60 -2.65 16 15 C 0.46 19.84 5.95 87.66 0.52 20.36 16 16 O -0.56 -29.65 9.74 14.35 0.14 -29.51 16 17 N -0.61 -27.22 2.86 -851.13 -2.43 -29.65 16 18 C 0.08 2.46 8.80 127.77 1.12 3.58 16 19 C 0.25 14.48 4.47 85.63 0.38 14.86 16 20 C -0.61 -37.26 9.39 25.60 0.24 -37.02 16 21 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 22 C -0.03 -2.07 5.46 84.66 0.46 -1.61 16 23 N -0.93 -60.88 13.65 21.45 0.29 -60.59 16 24 Si 1.12 53.23 29.90 68.60 2.05 55.28 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 28 C 0.01 0.36 6.17 86.65 0.53 0.89 16 29 C -0.09 -2.39 6.19 31.74 0.20 -2.19 16 30 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.04 1.21 8.13 -2.38 -0.02 1.19 16 32 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.07 1.41 7.74 -2.39 -0.02 1.39 16 34 H 0.11 1.54 7.22 -2.39 -0.02 1.53 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.35 7.19 -2.39 -0.02 1.33 16 38 H 0.10 1.80 7.97 -2.39 -0.02 1.78 16 39 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 1.73 4.53 -2.39 -0.01 1.72 16 41 H 0.04 1.17 5.86 -2.39 -0.01 1.15 16 42 H 0.07 1.91 6.95 -2.39 -0.02 1.90 16 43 H 0.10 2.32 6.01 -2.39 -0.01 2.30 16 44 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 45 H 0.01 0.61 7.94 -2.39 -0.02 0.59 16 46 H -0.02 -1.28 7.29 -2.39 -0.02 -1.30 16 47 H 0.25 16.85 7.22 -92.70 -0.67 16.18 16 48 H 0.03 1.18 5.39 -2.39 -0.01 1.17 16 49 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 50 H 0.07 1.80 7.76 -2.39 -0.02 1.78 16 51 H 0.12 2.16 7.22 -2.39 -0.02 2.15 16 Total: -1.00 -88.33 381.42 3.36 -84.97 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.03 Total: 20.70 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.41 Total: 12.45 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -6.13 Total: -107.16 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: 0.00 Total: -66.24 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 2.05 Total: 55.28 kcal Total: -88.33 3.36 -84.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880179317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.923 kcal (2) G-P(sol) polarization free energy of solvation -88.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds