Wall clock time and date at job start Tue Mar 31 2020 21:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99765 * 2 1 4 4 O 1.20821 * 120.00332 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99829 * 179.97438 * 3 2 1 6 6 C 1.54112 * 111.69253 * 298.59180 * 5 3 2 7 7 C 1.54884 * 104.15492 * 261.42613 * 6 5 3 8 8 C 1.54819 * 102.74100 * 321.54909 * 7 6 5 9 9 C 1.54263 * 104.42713 * 37.79742 * 8 7 6 10 10 H 1.08998 * 111.87852 * 99.07187 * 9 8 7 11 11 N 1.47922 * 108.70941 * 222.44938 * 9 8 7 12 12 C 1.46899 * 111.00242 * 260.05014 * 11 9 8 13 13 H 1.09000 * 109.47013 * 70.97271 * 12 11 9 14 14 C 1.53000 * 109.47239 * 190.97597 * 12 11 9 15 15 C 1.50702 * 109.46941 * 310.97508 * 12 11 9 16 16 O 1.21280 * 120.00117 * 336.53976 * 15 12 11 17 17 N 1.34778 * 119.99931 * 156.54245 * 15 12 11 18 18 C 1.46495 * 119.99915 * 5.44606 * 17 15 12 19 19 C 1.46501 * 119.99860 * 185.44768 * 17 15 12 20 20 C 1.50699 * 109.47113 * 269.99782 * 19 17 15 21 21 H 1.07996 * 119.99763 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00183 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99988 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00236 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47251 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47334 * 240.00059 * 24 22 20 27 27 H 1.48506 * 109.47268 * 119.99695 * 24 22 20 28 28 C 1.48475 * 105.99210 * 139.43142 * 11 9 8 29 29 C 1.54446 * 111.71437 * 61.01384 * 5 3 2 30 30 H 1.08995 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46934 * 300.00132 * 1 2 3 32 32 H 1.08996 * 109.46984 * 60.00248 * 1 2 3 33 33 H 1.09003 * 110.49464 * 20.09644 * 6 5 3 34 34 H 1.09003 * 110.49270 * 142.76070 * 6 5 3 35 35 H 1.09006 * 110.75641 * 79.86345 * 7 6 5 36 36 H 1.09004 * 110.75745 * 203.05037 * 7 6 5 37 37 H 1.09008 * 110.44229 * 156.53180 * 8 7 6 38 38 H 1.08997 * 110.44434 * 278.92786 * 8 7 6 39 39 H 1.08999 * 109.47257 * 65.07154 * 14 12 11 40 40 H 1.09006 * 109.47175 * 185.06563 * 14 12 11 41 41 H 1.08997 * 109.46877 * 305.06193 * 14 12 11 42 42 H 1.09001 * 109.47174 * 265.54168 * 18 17 15 43 43 H 1.08995 * 109.47547 * 25.54810 * 18 17 15 44 44 H 1.09009 * 109.47107 * 145.55008 * 18 17 15 45 45 H 1.09001 * 109.47238 * 150.00086 * 19 17 15 46 46 H 1.08998 * 109.47404 * 29.99849 * 19 17 15 47 47 H 0.96999 * 119.99723 * 0.02562 * 23 22 20 48 48 H 1.08999 * 110.67175 * 79.22382 * 28 11 9 49 49 H 1.09006 * 110.67061 * 202.19058 * 28 11 9 50 50 H 1.08996 * 110.72570 * 341.46817 * 29 5 3 51 51 H 1.09001 * 110.87140 * 218.26304 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1706 0.6207 1.2583 7 6 4.4563 1.8126 2.2052 8 6 4.9556 2.9090 1.2329 9 6 4.0824 2.7327 -0.0264 10 1 3.2585 3.4458 -0.0525 11 7 4.9432 2.8606 -1.2225 12 6 4.8289 4.2009 -1.8127 13 1 5.3133 4.9276 -1.1605 14 6 5.5074 4.2141 -3.1839 15 6 3.3732 4.5584 -1.9691 16 8 2.5378 3.6820 -2.0395 17 7 2.9998 5.8519 -2.0307 18 6 4.0158 6.9067 -2.0660 19 6 1.5778 6.2031 -2.0625 20 6 1.1064 6.2605 -3.4927 21 1 1.7968 6.0555 -4.2974 22 6 -0.2063 6.5748 -3.7738 23 7 -1.0472 6.8240 -2.7937 24 14 -0.7908 6.6454 -5.5465 25 1 0.3404 6.3254 -6.4539 26 1 -1.2967 8.0087 -5.8471 27 1 -1.8810 5.6572 -5.7480 28 6 4.4793 1.8191 -2.1737 29 6 4.1739 0.6102 -1.2542 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.4554 -0.0650 1.7128 34 1 5.0956 0.0999 1.0106 35 1 3.5448 2.1309 2.7113 36 1 5.2284 1.5539 2.9298 37 1 4.8052 3.8984 1.6651 38 1 6.0078 2.7551 0.9936 39 1 4.9674 3.5543 -3.8629 40 1 5.5019 5.2287 -3.5823 41 1 6.5364 3.8689 -3.0833 42 1 4.1986 7.2691 -1.0544 43 1 4.9407 6.5066 -2.4813 44 1 3.6639 7.7295 -2.6885 45 1 1.4333 7.1761 -1.5930 46 1 1.0054 5.4498 -1.5212 47 1 -0.7438 6.7870 -1.8732 48 1 3.5778 2.1456 -2.6920 49 1 5.2648 1.5734 -2.8884 50 1 3.4529 -0.0589 -1.7236 51 1 5.0897 0.0743 -1.0048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880179318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:26 Heat of formation + Delta-G solvation = -103.396255 kcal Electronic energy + Delta-G solvation = -32886.421707 eV Core-core repulsion = 28786.287329 eV Total energy + Delta-G solvation = -4100.134378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27822 -39.75051 -38.30622 -36.08897 -35.44530 -34.70256 -33.03455 -32.38133 -30.38148 -28.18433 -27.47514 -26.92343 -26.46127 -25.81515 -23.76128 -22.61791 -22.41450 -20.89425 -20.64633 -19.15042 -18.36338 -17.07014 -16.91191 -16.77453 -16.60649 -16.21774 -15.78979 -14.94991 -14.71667 -14.67981 -14.30557 -14.15342 -13.72635 -13.48819 -13.29889 -13.14442 -13.08374 -12.83884 -12.44304 -12.26898 -12.12918 -11.93004 -11.86566 -11.67749 -11.46440 -11.29828 -11.23111 -11.18793 -11.06521 -10.94278 -10.82699 -10.78819 -10.60430 -10.54232 -10.53924 -10.31141 -10.12668 -9.93596 -9.53965 -9.05901 -8.34181 -7.91060 -7.54874 -6.34230 -4.05327 2.53468 2.81866 3.33896 3.43558 3.48863 3.61260 3.93188 4.03618 4.26174 4.47896 4.55594 4.68271 5.01492 5.04336 5.10172 5.10730 5.20676 5.23453 5.30135 5.31674 5.36611 5.40991 5.52244 5.55283 5.58452 5.61683 5.67684 5.69631 5.76025 5.84514 5.87203 5.88265 5.91471 5.94136 6.00541 6.09031 6.12273 6.17542 6.25519 6.34409 6.36962 6.62461 6.84083 6.96358 7.08966 7.21707 7.46019 8.07657 8.09650 8.33516 8.48837 8.82249 9.05071 9.64372 11.03051 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.004553 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.660407 B = 6147.960948 C = 7313.969241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.467 6.467 5 C -0.055 4.055 6 C -0.105 4.105 7 C -0.126 4.126 8 C -0.110 4.110 9 C 0.069 3.931 10 H 0.099 0.901 11 N -0.484 5.484 12 C 0.050 3.950 13 H 0.098 0.902 14 C -0.141 4.141 15 C 0.476 3.524 16 O -0.519 6.519 17 N -0.597 5.597 18 C 0.079 3.921 19 C 0.237 3.763 20 C -0.600 4.600 21 H 0.050 0.950 22 C 0.018 3.982 23 N -0.912 5.912 24 Si 1.076 2.924 25 H -0.291 1.291 26 H -0.287 1.287 27 H -0.287 1.287 28 C 0.016 3.984 29 C -0.104 4.104 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.017 0.983 46 H 0.033 0.967 47 H 0.268 0.732 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.022 -11.854 7.395 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.350 6.350 5 C -0.057 4.057 6 C -0.143 4.143 7 C -0.164 4.164 8 C -0.148 4.148 9 C -0.039 4.039 10 H 0.117 0.883 11 N -0.207 5.207 12 C -0.063 4.063 13 H 0.116 0.884 14 C -0.198 4.198 15 C 0.261 3.739 16 O -0.396 6.396 17 N -0.329 5.329 18 C -0.065 4.065 19 C 0.117 3.883 20 C -0.639 4.639 21 H 0.068 0.932 22 C -0.186 4.186 23 N -0.548 5.548 24 Si 0.905 3.095 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.213 1.213 28 C -0.111 4.111 29 C -0.142 4.142 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.549 -11.757 6.528 19.089 hybrid contribution 0.178 0.136 0.646 0.684 sum 13.726 -11.620 7.174 19.363 Atomic orbital electron populations 1.23215 0.76601 1.03097 1.02845 1.86426 1.23116 1.33775 1.84946 1.23133 0.91207 0.81479 0.73440 1.90784 1.66241 1.35803 1.42138 1.21595 0.87304 0.98045 0.98746 1.22465 1.00934 0.97528 0.93367 1.22537 1.01146 0.95262 0.97464 1.22379 1.00267 0.98472 0.93703 1.23199 0.95003 0.94698 0.91035 0.88325 1.65377 1.48386 1.01891 1.04999 1.22034 0.93326 0.92795 0.98145 0.88405 1.21819 1.00790 1.02816 0.94424 1.21343 0.91167 0.83351 0.78033 1.90689 1.53133 1.46595 1.49154 1.48043 1.08757 1.04977 1.71120 1.21735 0.91755 0.92336 1.00688 1.19301 0.75833 0.95131 0.98067 1.22258 0.98017 1.51684 0.91930 0.93183 1.25783 0.92956 0.93754 1.06088 1.70728 1.37463 1.46031 1.00600 0.83444 0.75363 0.76728 0.73955 1.21678 1.21321 1.21324 1.23573 1.01330 0.90676 0.95526 1.22582 1.00641 0.97410 0.93551 0.88454 0.92186 0.91668 0.91010 0.89772 0.91701 0.90935 0.91833 0.89947 0.91919 0.91421 0.91015 0.93851 0.91818 0.90971 0.96469 0.94858 0.92187 0.89684 0.90301 0.90575 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.37 -5.58 10.26 -39.26 -0.40 -5.98 16 3 C 0.47 8.23 6.56 36.01 0.24 8.47 16 4 O -0.47 -10.33 14.01 -24.00 -0.34 -10.66 16 5 C -0.06 -0.80 0.81 -153.45 -0.12 -0.92 16 6 C -0.11 -1.17 5.96 -25.16 -0.15 -1.32 16 7 C -0.13 -1.36 6.90 -24.78 -0.17 -1.53 16 8 C -0.11 -1.36 6.51 -25.11 -0.16 -1.52 16 9 C 0.07 1.08 2.16 -65.61 -0.14 0.94 16 10 H 0.10 2.01 4.25 -51.93 -0.22 1.79 16 11 N -0.48 -7.11 4.85 -214.89 -1.04 -8.15 16 12 C 0.05 0.77 2.20 -68.86 -0.15 0.62 16 13 H 0.10 1.37 7.19 -51.93 -0.37 1.00 16 14 C -0.14 -1.88 8.42 37.16 0.31 -1.56 16 15 C 0.48 9.98 5.39 -10.98 -0.06 9.92 16 16 O -0.52 -12.84 10.75 -8.68 -0.09 -12.93 16 17 N -0.60 -13.09 2.86 -182.96 -0.52 -13.61 16 18 C 0.08 1.31 9.92 59.84 0.59 1.90 16 19 C 0.24 6.43 4.45 -5.19 -0.02 6.40 16 20 C -0.60 -17.70 9.39 -34.44 -0.32 -18.03 16 21 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 22 C 0.02 0.54 5.46 -17.82 -0.10 0.45 16 23 N -0.91 -28.75 13.65 55.43 0.76 -27.99 16 24 Si 1.08 26.51 29.90 -169.99 -5.08 21.43 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.02 0.24 4.77 -1.94 -0.01 0.23 16 29 C -0.10 -1.35 6.19 -24.96 -0.15 -1.51 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16 34 H 0.08 0.78 7.22 -51.93 -0.37 0.40 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.08 0.93 7.97 -51.93 -0.41 0.51 16 39 H 0.06 0.92 7.05 -51.93 -0.37 0.55 16 40 H 0.07 0.87 6.31 -51.93 -0.33 0.54 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.86 4.70 -51.93 -0.24 0.62 16 44 H 0.07 1.24 8.11 -51.92 -0.42 0.82 16 45 H 0.02 0.47 7.94 -51.93 -0.41 0.06 16 46 H 0.03 1.03 7.37 -51.93 -0.38 0.65 16 47 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 48 H 0.09 1.62 5.46 -51.93 -0.28 1.33 16 49 H 0.08 1.00 7.75 -51.93 -0.40 0.59 16 50 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 51 H 0.08 0.89 7.23 -51.93 -0.38 0.51 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -36.42 387.46 -8.53 -44.95 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.28 Total: 3.04 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.64 Total: 4.08 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.81 Total: -49.75 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.83 Total: -29.58 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.42 -8.53 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880179318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.447 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds