Wall clock time and date at job start Tue Mar 31 2020 21:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99765 * 2 1 4 4 O 1.20821 * 120.00332 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99829 * 179.97438 * 3 2 1 6 6 C 1.54112 * 111.69253 * 298.59180 * 5 3 2 7 7 C 1.54884 * 104.15492 * 261.42613 * 6 5 3 8 8 C 1.54819 * 102.74100 * 321.54909 * 7 6 5 9 9 C 1.54263 * 104.42713 * 37.79742 * 8 7 6 10 10 H 1.08998 * 111.87852 * 99.07187 * 9 8 7 11 11 N 1.47922 * 108.70941 * 222.44938 * 9 8 7 12 12 C 1.46899 * 111.00242 * 260.05014 * 11 9 8 13 13 H 1.09000 * 109.47013 * 70.97271 * 12 11 9 14 14 C 1.53000 * 109.47239 * 190.97597 * 12 11 9 15 15 C 1.50702 * 109.46941 * 310.97508 * 12 11 9 16 16 O 1.21280 * 120.00117 * 336.53976 * 15 12 11 17 17 N 1.34778 * 119.99931 * 156.54245 * 15 12 11 18 18 C 1.46495 * 119.99915 * 5.44606 * 17 15 12 19 19 C 1.46501 * 119.99860 * 185.44768 * 17 15 12 20 20 C 1.50699 * 109.47113 * 269.99782 * 19 17 15 21 21 H 1.07996 * 119.99763 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00183 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99988 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00236 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47251 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47334 * 240.00059 * 24 22 20 27 27 H 1.48506 * 109.47268 * 119.99695 * 24 22 20 28 28 C 1.48475 * 105.99210 * 139.43142 * 11 9 8 29 29 C 1.54446 * 111.71437 * 61.01384 * 5 3 2 30 30 H 1.08995 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46934 * 300.00132 * 1 2 3 32 32 H 1.08996 * 109.46984 * 60.00248 * 1 2 3 33 33 H 1.09003 * 110.49464 * 20.09644 * 6 5 3 34 34 H 1.09003 * 110.49270 * 142.76070 * 6 5 3 35 35 H 1.09006 * 110.75641 * 79.86345 * 7 6 5 36 36 H 1.09004 * 110.75745 * 203.05037 * 7 6 5 37 37 H 1.09008 * 110.44229 * 156.53180 * 8 7 6 38 38 H 1.08997 * 110.44434 * 278.92786 * 8 7 6 39 39 H 1.08999 * 109.47257 * 65.07154 * 14 12 11 40 40 H 1.09006 * 109.47175 * 185.06563 * 14 12 11 41 41 H 1.08997 * 109.46877 * 305.06193 * 14 12 11 42 42 H 1.09001 * 109.47174 * 265.54168 * 18 17 15 43 43 H 1.08995 * 109.47547 * 25.54810 * 18 17 15 44 44 H 1.09009 * 109.47107 * 145.55008 * 18 17 15 45 45 H 1.09001 * 109.47238 * 150.00086 * 19 17 15 46 46 H 1.08998 * 109.47404 * 29.99849 * 19 17 15 47 47 H 0.96999 * 119.99723 * 0.02562 * 23 22 20 48 48 H 1.08999 * 110.67175 * 79.22382 * 28 11 9 49 49 H 1.09006 * 110.67061 * 202.19058 * 28 11 9 50 50 H 1.08996 * 110.72570 * 341.46817 * 29 5 3 51 51 H 1.09001 * 110.87140 * 218.26304 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1706 0.6207 1.2583 7 6 4.4563 1.8126 2.2052 8 6 4.9556 2.9090 1.2329 9 6 4.0824 2.7327 -0.0264 10 1 3.2585 3.4458 -0.0525 11 7 4.9432 2.8606 -1.2225 12 6 4.8289 4.2009 -1.8127 13 1 5.3133 4.9276 -1.1605 14 6 5.5074 4.2141 -3.1839 15 6 3.3732 4.5584 -1.9691 16 8 2.5378 3.6820 -2.0395 17 7 2.9998 5.8519 -2.0307 18 6 4.0158 6.9067 -2.0660 19 6 1.5778 6.2031 -2.0625 20 6 1.1064 6.2605 -3.4927 21 1 1.7968 6.0555 -4.2974 22 6 -0.2063 6.5748 -3.7738 23 7 -1.0472 6.8240 -2.7937 24 14 -0.7908 6.6454 -5.5465 25 1 0.3404 6.3254 -6.4539 26 1 -1.2967 8.0087 -5.8471 27 1 -1.8810 5.6572 -5.7480 28 6 4.4793 1.8191 -2.1737 29 6 4.1739 0.6102 -1.2542 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.4554 -0.0650 1.7128 34 1 5.0956 0.0999 1.0106 35 1 3.5448 2.1309 2.7113 36 1 5.2284 1.5539 2.9298 37 1 4.8052 3.8984 1.6651 38 1 6.0078 2.7551 0.9936 39 1 4.9674 3.5543 -3.8629 40 1 5.5019 5.2287 -3.5823 41 1 6.5364 3.8689 -3.0833 42 1 4.1986 7.2691 -1.0544 43 1 4.9407 6.5066 -2.4813 44 1 3.6639 7.7295 -2.6885 45 1 1.4333 7.1761 -1.5930 46 1 1.0054 5.4498 -1.5212 47 1 -0.7438 6.7870 -1.8732 48 1 3.5778 2.1456 -2.6920 49 1 5.2648 1.5734 -2.8884 50 1 3.4529 -0.0589 -1.7236 51 1 5.0897 0.0743 -1.0048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880179318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:25 Heat of formation + Delta-G solvation = -129.016118 kcal Electronic energy + Delta-G solvation = -32887.532668 eV Core-core repulsion = 28786.287329 eV Total energy + Delta-G solvation = -4101.245339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.54425 -41.21794 -39.67691 -37.50747 -36.97040 -36.21585 -35.04766 -33.66853 -31.57051 -29.47161 -29.27079 -28.07457 -27.55106 -27.32250 -25.63620 -24.04020 -23.81003 -22.24779 -21.62864 -20.46604 -19.87579 -19.03078 -18.33127 -18.20612 -18.05225 -17.54537 -17.17087 -16.55199 -16.10653 -15.92515 -15.71848 -15.53015 -15.32556 -14.80495 -14.77820 -14.41127 -14.25412 -14.23532 -14.07694 -13.70776 -13.57692 -13.31182 -13.17356 -13.09614 -12.92853 -12.81782 -12.60858 -12.51629 -12.45461 -12.26035 -12.07831 -12.02930 -12.01943 -11.90336 -11.81486 -11.64915 -11.39923 -11.23447 -11.19833 -11.04184 -10.68510 -9.45410 -9.34124 -8.75216 -6.51304 1.17491 1.40903 1.52495 1.61958 1.68195 1.76480 2.27639 2.47582 2.86192 3.03722 3.15175 3.44013 3.59541 3.69074 3.89450 3.98157 4.11085 4.13174 4.14353 4.19796 4.25426 4.26659 4.31648 4.45898 4.50727 4.52533 4.53709 4.64279 4.65347 4.70976 4.76657 4.78289 4.83877 4.87450 4.92206 4.93671 4.96227 5.03528 5.12795 5.15033 5.18862 5.22740 5.31451 5.40543 5.53534 5.75814 5.77119 5.85727 6.08574 6.36922 6.68441 6.73269 7.25871 7.42551 8.57653 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.004553 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.660407 B = 6147.960948 C = 7313.969241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.527 6.527 5 C -0.062 4.062 6 C -0.096 4.096 7 C -0.122 4.122 8 C -0.103 4.103 9 C 0.061 3.939 10 H 0.044 0.956 11 N -0.460 5.460 12 C 0.060 3.940 13 H 0.122 0.878 14 C -0.135 4.135 15 C 0.465 3.535 16 O -0.564 6.564 17 N -0.610 5.610 18 C 0.075 3.925 19 C 0.254 3.746 20 C -0.607 4.607 21 H 0.044 0.956 22 C -0.036 4.036 23 N -0.933 5.933 24 Si 1.125 2.875 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.284 1.284 28 C 0.014 3.986 29 C -0.096 4.096 30 H 0.144 0.856 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.043 0.957 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.009 0.991 46 H -0.020 1.020 47 H 0.251 0.749 48 H 0.035 0.965 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.997 -13.410 7.098 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.414 6.414 5 C -0.064 4.064 6 C -0.134 4.134 7 C -0.160 4.160 8 C -0.140 4.140 9 C -0.047 4.047 10 H 0.062 0.938 11 N -0.183 5.183 12 C -0.053 4.053 13 H 0.139 0.861 14 C -0.192 4.192 15 C 0.253 3.747 16 O -0.443 6.443 17 N -0.343 5.343 18 C -0.067 4.067 19 C 0.131 3.869 20 C -0.646 4.646 21 H 0.062 0.938 22 C -0.233 4.233 23 N -0.570 5.570 24 Si 0.946 3.054 25 H -0.197 1.197 26 H -0.191 1.191 27 H -0.210 1.210 28 C -0.114 4.114 29 C -0.134 4.134 30 H 0.162 0.838 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.027 0.973 46 H -0.002 1.002 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.126 0.874 50 H 0.087 0.913 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.585 -13.323 6.254 22.931 hybrid contribution -1.122 0.578 0.784 1.486 sum 16.463 -12.745 7.038 21.977 Atomic orbital electron populations 1.23440 0.75684 1.05628 1.01389 1.86430 1.24087 1.32686 1.84314 1.24034 0.92823 0.81052 0.71535 1.90775 1.67815 1.37760 1.45036 1.21808 0.84959 0.98068 1.01568 1.22532 1.02101 0.97457 0.91269 1.22550 1.01278 0.94535 0.97651 1.22362 1.00712 0.98821 0.92146 1.23191 0.94318 0.94251 0.92987 0.93838 1.65524 1.46946 1.01320 1.04474 1.22178 0.89044 0.93798 1.00259 0.86064 1.21839 1.02114 1.03069 0.92211 1.22549 0.93557 0.82231 0.76401 1.90687 1.55151 1.47844 1.50604 1.48137 1.07352 1.07028 1.71738 1.22009 0.91522 0.90871 1.02315 1.18704 0.79201 0.92756 0.96203 1.22511 0.98253 1.51145 0.92679 0.93806 1.27459 0.93458 0.92627 1.09756 1.70866 1.37903 1.47947 1.00272 0.82850 0.75606 0.77863 0.69080 1.19748 1.19057 1.20991 1.23566 1.00113 0.91500 0.96193 1.22662 1.02037 0.96605 0.92080 0.83789 0.92504 0.94382 0.90708 0.86354 0.93791 0.87444 0.92562 0.87537 0.93776 0.90752 0.87280 0.91581 0.88037 0.91919 0.97270 1.00244 0.93932 0.94670 0.87418 0.91258 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.56 113.37 1.20 2.08 16 2 O -0.36 -11.26 10.26 -51.44 -0.53 -11.79 16 3 C 0.46 17.20 6.56 71.24 0.47 17.66 16 4 O -0.53 -25.68 14.01 27.00 0.38 -25.30 16 5 C -0.06 -1.77 0.81 -51.49 -0.04 -1.81 16 6 C -0.10 -1.84 5.96 31.61 0.19 -1.65 16 7 C -0.12 -2.34 6.90 31.86 0.22 -2.12 16 8 C -0.10 -2.31 6.51 31.64 0.21 -2.11 16 9 C 0.06 1.92 2.16 45.71 0.10 2.01 16 10 H 0.04 1.90 4.25 -2.39 -0.01 1.89 16 11 N -0.46 -12.72 4.85 -833.78 -4.05 -16.77 16 12 C 0.06 1.78 2.20 44.17 0.10 1.88 16 13 H 0.12 3.05 7.19 -2.39 -0.02 3.04 16 14 C -0.13 -3.23 8.42 71.98 0.61 -2.62 16 15 C 0.47 20.35 5.39 87.66 0.47 20.83 16 16 O -0.56 -30.15 10.75 10.58 0.11 -30.04 16 17 N -0.61 -27.95 2.86 -851.13 -2.43 -30.38 16 18 C 0.07 2.43 9.92 127.77 1.27 3.70 16 19 C 0.25 14.81 4.45 85.63 0.38 15.19 16 20 C -0.61 -37.54 9.39 25.60 0.24 -37.30 16 21 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 22 C -0.04 -2.20 5.46 84.65 0.46 -1.74 16 23 N -0.93 -61.62 13.65 21.45 0.29 -61.33 16 24 Si 1.13 54.08 29.90 68.60 2.05 56.14 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 28 C 0.01 0.39 4.77 86.66 0.41 0.80 16 29 C -0.10 -2.31 6.19 31.74 0.20 -2.11 16 30 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.04 1.24 8.13 -2.39 -0.02 1.22 16 33 H 0.07 1.41 7.74 -2.39 -0.02 1.39 16 34 H 0.12 1.51 7.22 -2.39 -0.02 1.49 16 35 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 38 H 0.11 1.91 7.97 -2.39 -0.02 1.89 16 39 H 0.04 1.23 7.05 -2.39 -0.02 1.21 16 40 H 0.07 1.68 6.31 -2.38 -0.02 1.66 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 2.49 4.70 -2.39 -0.01 2.48 16 44 H 0.06 2.15 8.11 -2.38 -0.02 2.13 16 45 H 0.01 0.55 7.94 -2.39 -0.02 0.53 16 46 H -0.02 -1.40 7.37 -2.39 -0.02 -1.42 16 47 H 0.25 17.06 7.22 -92.71 -0.67 16.39 16 48 H 0.03 1.39 5.46 -2.39 -0.01 1.38 16 49 H 0.11 2.42 7.75 -2.38 -0.02 2.40 16 50 H 0.07 1.76 7.76 -2.39 -0.02 1.74 16 51 H 0.13 2.01 7.23 -2.39 -0.02 1.99 16 Total: -1.00 -89.94 387.46 3.33 -86.61 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.02 Total: 20.16 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.47 Total: 12.69 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -6.18 Total: -108.47 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -0.04 Total: -67.13 kcal Atomic # 14 Polarization: 54.08 SS G_CDS: 2.05 Total: 56.14 kcal Total: -89.94 3.33 -86.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880179318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.405 kcal (2) G-P(sol) polarization free energy of solvation -89.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds