Wall clock time and date at job start Tue Mar 31 2020 21:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47512 * 2 1 4 4 C 1.50698 * 109.47338 * 120.00444 * 2 1 3 5 5 H 1.08001 * 120.00379 * 119.99324 * 4 2 1 6 6 C 1.37883 * 119.99916 * 300.00290 * 4 2 1 7 7 N 1.31506 * 120.00132 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99721 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47324 * 90.00352 * 8 6 4 10 10 H 1.48500 * 109.47162 * 210.00471 * 8 6 4 11 11 H 1.48501 * 109.46942 * 330.00235 * 8 6 4 12 12 C 1.50708 * 109.47014 * 240.00055 * 2 1 3 13 13 O 1.21275 * 120.00014 * 246.14372 * 12 2 1 14 14 N 1.34783 * 119.99692 * 66.14760 * 12 2 1 15 15 C 1.46499 * 119.99416 * 184.06471 * 14 12 2 16 16 C 1.50700 * 109.47018 * 55.73760 * 15 14 12 17 17 O 1.21284 * 119.99451 * 226.82796 * 16 15 14 18 18 N 1.34777 * 120.00402 * 46.83047 * 16 15 14 19 19 C 1.47149 * 120.98073 * 355.92339 * 18 16 15 20 20 C 1.53710 * 108.16279 * 129.43222 * 19 18 16 21 21 O 1.42955 * 109.14958 * 52.53589 * 20 19 18 22 22 C 1.42963 * 114.16713 * 297.28802 * 21 20 19 23 23 C 1.47150 * 120.98010 * 176.20025 * 18 16 15 24 24 C 1.52997 * 109.47453 * 295.72937 * 15 14 12 25 25 C 1.52990 * 109.47378 * 300.00861 * 24 15 14 26 26 C 1.53007 * 109.46981 * 299.99678 * 25 24 15 27 27 C 1.52996 * 109.47103 * 59.99743 * 26 25 24 28 28 C 1.52998 * 109.47717 * 300.00341 * 27 26 25 29 29 H 1.08998 * 109.47298 * 185.31896 * 1 2 3 30 30 H 1.09000 * 109.46995 * 305.32379 * 1 2 3 31 31 H 1.08999 * 109.47362 * 65.31984 * 1 2 3 32 32 H 0.97002 * 120.00086 * 179.97438 * 7 6 4 33 33 H 0.96998 * 119.99839 * 4.33757 * 14 12 2 34 34 H 1.09003 * 109.67754 * 249.21267 * 19 18 16 35 35 H 1.09003 * 109.68143 * 9.75992 * 19 18 16 36 36 H 1.08994 * 109.65653 * 292.56872 * 20 19 18 37 37 H 1.09004 * 109.44241 * 172.37065 * 20 19 18 38 38 H 1.09001 * 109.51345 * 302.65573 * 22 21 20 39 39 H 1.08995 * 109.55790 * 182.52751 * 22 21 20 40 40 H 1.08999 * 109.68609 * 350.23444 * 23 18 16 41 41 H 1.09002 * 109.68059 * 110.75537 * 23 18 16 42 42 H 1.09011 * 109.46633 * 60.00511 * 24 15 14 43 43 H 1.09003 * 109.47253 * 179.97438 * 24 15 14 44 44 H 1.09000 * 109.47608 * 180.02562 * 25 24 15 45 45 H 1.08994 * 109.47823 * 59.99169 * 25 24 15 46 46 H 1.09003 * 109.46649 * 300.00294 * 26 25 24 47 47 H 1.08994 * 109.47409 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.47163 * 179.97438 * 27 26 25 49 49 H 1.09003 * 109.46918 * 60.00716 * 27 26 25 50 50 H 1.09003 * 109.46808 * 300.00511 * 28 27 26 51 51 H 1.08990 * 109.47682 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5564 8 14 0.6257 1.2796 2.6542 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9952 3.9071 11 1 0.8490 2.1771 1.4923 12 6 2.0323 -0.7104 -1.2305 13 8 2.6349 -1.7573 -1.1228 14 7 1.8118 -0.1822 -2.4508 15 6 2.2211 -0.9156 -3.6511 16 6 1.5915 -2.2847 -3.6423 17 8 2.2646 -3.2632 -3.8886 18 7 0.2807 -2.4220 -3.3607 19 6 -0.5361 -1.2614 -2.9720 20 6 -1.7975 -1.2476 -3.8503 21 8 -2.4347 -2.5251 -3.7759 22 6 -1.6427 -3.6043 -4.2779 23 6 -0.3745 -3.7379 -3.4270 24 6 3.7446 -1.0547 -3.6692 25 6 4.3837 0.3353 -3.6781 26 6 3.9265 1.0988 -4.9227 27 6 2.4030 1.2380 -4.9048 28 6 1.7639 -0.1521 -4.8958 29 1 -0.3634 -1.0232 0.0953 30 1 -0.3633 0.5942 0.8385 31 1 -0.3634 0.4291 -0.9338 32 1 1.9039 -0.5277 4.4375 33 1 1.3859 0.6853 -2.5340 34 1 -0.8171 -1.3454 -1.9222 35 1 0.0316 -0.3441 -3.1283 36 1 -1.5224 -1.0375 -4.8838 37 1 -2.4813 -0.4783 -3.4912 38 1 -1.3670 -3.4028 -5.3130 39 1 -2.2144 -4.5308 -4.2271 40 1 0.3001 -4.4614 -3.8847 41 1 -0.6391 -4.0673 -2.4222 42 1 4.0703 -1.5987 -2.7824 43 1 4.0491 -1.6008 -4.5621 44 1 5.4691 0.2362 -3.6914 45 1 4.0792 0.8810 -2.7851 46 1 4.2310 0.5531 -5.8159 47 1 4.3821 2.0889 -4.9294 48 1 2.0774 1.7823 -5.7912 49 1 2.0986 1.7836 -4.0116 50 1 2.0684 -0.6977 -5.7889 51 1 0.6786 -0.0530 -4.8825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889206217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:07 Heat of formation + Delta-G solvation = -101.231238 kcal Electronic energy + Delta-G solvation = -33384.737046 eV Core-core repulsion = 29284.696550 eV Total energy + Delta-G solvation = -4100.040496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34938 -39.24535 -38.11855 -37.39207 -34.88466 -33.89429 -33.47668 -31.51872 -31.39109 -30.81144 -29.61926 -27.88361 -25.30397 -24.46974 -23.68923 -23.11542 -22.79330 -21.63837 -19.99280 -19.67896 -18.85853 -17.27233 -16.76281 -16.62245 -16.46849 -16.08076 -15.53838 -15.32628 -15.07444 -14.93525 -14.80041 -14.53013 -14.18549 -14.04344 -13.76469 -13.27203 -13.21665 -12.91678 -12.79579 -12.52373 -12.35401 -12.26288 -12.23105 -12.16513 -11.83764 -11.67311 -11.50016 -11.23238 -11.03305 -10.83171 -10.65266 -10.64076 -10.59403 -10.36777 -10.31574 -10.26328 -9.73993 -9.67539 -9.15229 -8.74278 -8.62178 -8.47452 -8.46167 -6.08253 -4.09020 2.67873 2.91718 3.19408 3.24626 3.32751 3.45566 3.59811 3.66909 4.33529 4.34951 4.52218 4.60377 4.62969 4.81049 4.86730 4.96457 5.04414 5.10843 5.13621 5.19283 5.21962 5.32115 5.35200 5.37731 5.43326 5.44238 5.60120 5.64479 5.68193 5.76569 5.81972 5.90611 5.93006 5.99702 6.00655 6.05208 6.17977 6.20411 6.34192 6.40661 6.45850 6.57061 6.64280 6.77248 6.91518 7.07886 7.41704 7.48587 7.95679 8.30884 8.50045 8.99089 9.12159 9.49911 11.04724 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005490 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.198685 B = 5098.976487 C = 6450.326818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.071 3.929 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.525 3.475 13 O -0.508 6.508 14 N -0.739 5.739 15 C 0.169 3.831 16 C 0.531 3.469 17 O -0.531 6.531 18 N -0.607 5.607 19 C 0.055 3.945 20 C 0.046 3.954 21 O -0.379 6.379 22 C 0.051 3.949 23 C 0.076 3.924 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.122 4.122 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.397 0.603 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 5.367 -20.616 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.068 0.932 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.314 3.686 13 O -0.380 6.380 14 N -0.399 5.399 15 C 0.079 3.921 16 C 0.318 3.682 17 O -0.405 6.405 18 N -0.342 5.342 19 C -0.068 4.068 20 C -0.032 4.032 21 O -0.298 6.298 22 C -0.026 4.026 23 C -0.047 4.047 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.160 4.160 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.817 3.988 -20.363 21.550 hybrid contribution -0.662 1.268 0.286 1.459 sum -6.479 5.256 -20.077 21.741 Atomic orbital electron populations 1.22240 0.97373 1.01733 0.99030 1.19289 0.93095 0.97454 0.92445 0.93231 1.20905 1.32248 1.14059 0.87144 0.88944 1.24975 0.95792 0.96508 0.95768 1.69877 1.45296 1.40102 0.97891 0.86939 0.80792 0.83865 0.77090 1.20519 1.22288 1.19273 1.21375 0.77988 0.85616 0.83641 1.90637 1.38441 1.23145 1.85730 1.46751 1.64856 1.23221 1.05073 1.20348 0.96110 0.88882 0.86761 1.20697 0.80892 0.91216 0.75382 1.90654 1.60910 1.40045 1.48913 1.47911 1.09035 1.08478 1.68795 1.23215 0.92438 0.90521 1.00611 1.23149 0.94803 0.86265 0.98990 1.87960 1.41786 1.15628 1.84380 1.22973 0.92167 0.91078 0.96392 1.22247 0.94627 0.86126 1.01663 1.21720 0.91429 0.97520 1.04545 1.21506 1.00045 0.95755 0.98144 1.21560 0.95155 1.00337 0.98627 1.21521 0.96098 0.95586 1.02216 1.21882 1.00669 0.96899 0.96508 0.92149 0.93246 0.94774 0.92537 0.76654 0.89548 0.87364 0.92923 0.87738 0.92910 0.87762 0.88321 0.90587 0.89047 0.91053 0.91766 0.91371 0.92036 0.91900 0.91368 0.91494 0.90058 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.45 37.15 0.28 -2.50 16 2 C 0.00 -0.02 2.22 -92.92 -0.21 -0.23 16 3 H 0.05 1.05 7.20 -51.93 -0.37 0.67 16 4 C -0.51 -14.22 8.95 -34.44 -0.31 -14.53 16 5 H 0.09 3.02 7.02 -52.49 -0.37 2.65 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -27.36 13.96 55.43 0.77 -26.59 16 8 Si 0.88 20.69 24.32 -169.99 -4.13 16.56 16 9 H -0.28 -6.33 6.92 56.52 0.39 -5.94 16 10 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -5.72 6.53 56.52 0.37 -5.35 16 12 C 0.53 10.63 5.96 -10.98 -0.07 10.56 16 13 O -0.51 -12.66 12.75 5.56 0.07 -12.58 16 14 N -0.74 -10.76 1.79 -48.68 -0.09 -10.85 16 15 C 0.17 2.37 0.25 -132.97 -0.03 2.33 16 16 C 0.53 8.98 5.09 -10.99 -0.06 8.92 16 17 O -0.53 -10.80 15.47 5.55 0.09 -10.72 16 18 N -0.61 -8.97 3.01 -172.02 -0.52 -9.49 16 19 C 0.06 0.68 4.15 -3.32 -0.01 0.67 16 20 C 0.05 0.45 7.00 37.53 0.26 0.72 16 21 O -0.38 -4.54 10.74 -35.23 -0.38 -4.92 16 22 C 0.05 0.54 6.99 37.31 0.26 0.81 16 23 C 0.08 1.04 6.62 -3.53 -0.02 1.01 16 24 C -0.11 -1.74 3.97 -26.74 -0.11 -1.84 16 25 C -0.12 -1.45 5.77 -26.73 -0.15 -1.61 16 26 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 27 C -0.12 -0.95 5.75 -26.73 -0.15 -1.10 16 28 C -0.12 -1.18 4.53 -26.73 -0.12 -1.30 16 29 H 0.06 1.21 7.52 -51.93 -0.39 0.82 16 30 H 0.05 0.99 3.43 -51.93 -0.18 0.81 16 31 H 0.03 0.48 6.83 -51.93 -0.35 0.13 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 33 H 0.40 4.53 6.31 -40.82 -0.26 4.28 16 34 H 0.09 1.24 5.77 -51.93 -0.30 0.94 16 35 H 0.11 1.17 3.11 -51.93 -0.16 1.01 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.39 7.11 -51.93 -0.37 1.03 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.81 6.35 -51.92 -0.33 1.48 16 43 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.93 7.60 -51.93 -0.39 0.53 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.53 6.77 -51.93 -0.35 0.18 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.59 6.37 -51.93 -0.33 0.26 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -35.82 367.74 -7.32 -43.14 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.98 Total: 7.34 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.70 Total: 2.57 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.17 Total: -46.93 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.22 Total: -28.23 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.13 Total: 16.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.82 -7.32 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889206217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.091 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds