Wall clock time and date at job start Tue Mar 31 2020 21:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47512 * 2 1 4 4 C 1.50698 * 109.47338 * 120.00444 * 2 1 3 5 5 H 1.08001 * 120.00379 * 119.99324 * 4 2 1 6 6 C 1.37883 * 119.99916 * 300.00290 * 4 2 1 7 7 N 1.31506 * 120.00132 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99721 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47324 * 90.00352 * 8 6 4 10 10 H 1.48500 * 109.47162 * 210.00471 * 8 6 4 11 11 H 1.48501 * 109.46942 * 330.00235 * 8 6 4 12 12 C 1.50708 * 109.47014 * 240.00055 * 2 1 3 13 13 O 1.21275 * 120.00014 * 246.14372 * 12 2 1 14 14 N 1.34783 * 119.99692 * 66.14760 * 12 2 1 15 15 C 1.46499 * 119.99416 * 184.06471 * 14 12 2 16 16 C 1.50700 * 109.47018 * 55.73760 * 15 14 12 17 17 O 1.21284 * 119.99451 * 226.82796 * 16 15 14 18 18 N 1.34777 * 120.00402 * 46.83047 * 16 15 14 19 19 C 1.47149 * 120.98073 * 355.92339 * 18 16 15 20 20 C 1.53710 * 108.16279 * 129.43222 * 19 18 16 21 21 O 1.42955 * 109.14958 * 52.53589 * 20 19 18 22 22 C 1.42963 * 114.16713 * 297.28802 * 21 20 19 23 23 C 1.47150 * 120.98010 * 176.20025 * 18 16 15 24 24 C 1.52997 * 109.47453 * 295.72937 * 15 14 12 25 25 C 1.52990 * 109.47378 * 300.00861 * 24 15 14 26 26 C 1.53007 * 109.46981 * 299.99678 * 25 24 15 27 27 C 1.52996 * 109.47103 * 59.99743 * 26 25 24 28 28 C 1.52998 * 109.47717 * 300.00341 * 27 26 25 29 29 H 1.08998 * 109.47298 * 185.31896 * 1 2 3 30 30 H 1.09000 * 109.46995 * 305.32379 * 1 2 3 31 31 H 1.08999 * 109.47362 * 65.31984 * 1 2 3 32 32 H 0.97002 * 120.00086 * 179.97438 * 7 6 4 33 33 H 0.96998 * 119.99839 * 4.33757 * 14 12 2 34 34 H 1.09003 * 109.67754 * 249.21267 * 19 18 16 35 35 H 1.09003 * 109.68143 * 9.75992 * 19 18 16 36 36 H 1.08994 * 109.65653 * 292.56872 * 20 19 18 37 37 H 1.09004 * 109.44241 * 172.37065 * 20 19 18 38 38 H 1.09001 * 109.51345 * 302.65573 * 22 21 20 39 39 H 1.08995 * 109.55790 * 182.52751 * 22 21 20 40 40 H 1.08999 * 109.68609 * 350.23444 * 23 18 16 41 41 H 1.09002 * 109.68059 * 110.75537 * 23 18 16 42 42 H 1.09011 * 109.46633 * 60.00511 * 24 15 14 43 43 H 1.09003 * 109.47253 * 179.97438 * 24 15 14 44 44 H 1.09000 * 109.47608 * 180.02562 * 25 24 15 45 45 H 1.08994 * 109.47823 * 59.99169 * 25 24 15 46 46 H 1.09003 * 109.46649 * 300.00294 * 26 25 24 47 47 H 1.08994 * 109.47409 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.47163 * 179.97438 * 27 26 25 49 49 H 1.09003 * 109.46918 * 60.00716 * 27 26 25 50 50 H 1.09003 * 109.46808 * 300.00511 * 28 27 26 51 51 H 1.08990 * 109.47682 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5564 8 14 0.6257 1.2796 2.6542 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9952 3.9071 11 1 0.8490 2.1771 1.4923 12 6 2.0323 -0.7104 -1.2305 13 8 2.6349 -1.7573 -1.1228 14 7 1.8118 -0.1822 -2.4508 15 6 2.2211 -0.9156 -3.6511 16 6 1.5915 -2.2847 -3.6423 17 8 2.2646 -3.2632 -3.8886 18 7 0.2807 -2.4220 -3.3607 19 6 -0.5361 -1.2614 -2.9720 20 6 -1.7975 -1.2476 -3.8503 21 8 -2.4347 -2.5251 -3.7759 22 6 -1.6427 -3.6043 -4.2779 23 6 -0.3745 -3.7379 -3.4270 24 6 3.7446 -1.0547 -3.6692 25 6 4.3837 0.3353 -3.6781 26 6 3.9265 1.0988 -4.9227 27 6 2.4030 1.2380 -4.9048 28 6 1.7639 -0.1521 -4.8958 29 1 -0.3634 -1.0232 0.0953 30 1 -0.3633 0.5942 0.8385 31 1 -0.3634 0.4291 -0.9338 32 1 1.9039 -0.5277 4.4375 33 1 1.3859 0.6853 -2.5340 34 1 -0.8171 -1.3454 -1.9222 35 1 0.0316 -0.3441 -3.1283 36 1 -1.5224 -1.0375 -4.8838 37 1 -2.4813 -0.4783 -3.4912 38 1 -1.3670 -3.4028 -5.3130 39 1 -2.2144 -4.5308 -4.2271 40 1 0.3001 -4.4614 -3.8847 41 1 -0.6391 -4.0673 -2.4222 42 1 4.0703 -1.5987 -2.7824 43 1 4.0491 -1.6008 -4.5621 44 1 5.4691 0.2362 -3.6914 45 1 4.0792 0.8810 -2.7851 46 1 4.2310 0.5531 -5.8159 47 1 4.3821 2.0889 -4.9294 48 1 2.0774 1.7823 -5.7912 49 1 2.0986 1.7836 -4.0116 50 1 2.0684 -0.6977 -5.7889 51 1 0.6786 -0.0530 -4.8825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889206217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:06 Heat of formation + Delta-G solvation = -129.135657 kcal Electronic energy + Delta-G solvation = -33385.947073 eV Core-core repulsion = 29284.696550 eV Total energy + Delta-G solvation = -4101.250522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58755 -40.41291 -39.46048 -38.56180 -36.08459 -35.78120 -34.74591 -33.33417 -32.47218 -31.73195 -30.84688 -28.90571 -27.17825 -25.56533 -24.91057 -24.49350 -23.72819 -22.62080 -21.48357 -20.71913 -20.10329 -18.87036 -18.30756 -18.03112 -17.68429 -17.07732 -16.78430 -16.57209 -16.40643 -16.07393 -15.97529 -15.75175 -15.40403 -15.16671 -15.08655 -14.81833 -14.53109 -14.27255 -14.09911 -13.85767 -13.56180 -13.39463 -13.32233 -13.26911 -13.10330 -12.87449 -12.78509 -12.49942 -12.40459 -12.11100 -12.08880 -11.74943 -11.71648 -11.46816 -11.44277 -11.27345 -11.24426 -11.20494 -10.93337 -10.77143 -10.39171 -9.84511 -9.61514 -8.26931 -6.35611 1.33184 1.37734 1.40635 1.51919 1.73619 1.89964 2.26638 2.35023 2.86995 3.07054 3.28027 3.57354 3.70264 3.71631 3.94501 4.01384 4.06899 4.12762 4.13226 4.22079 4.23334 4.28472 4.39663 4.42977 4.46613 4.48626 4.57472 4.60381 4.62293 4.71553 4.75250 4.75975 4.83652 4.91216 4.96842 5.04188 5.12318 5.17312 5.21433 5.30382 5.33924 5.39965 5.44487 5.45713 5.52879 5.54729 6.10813 6.21131 6.26654 6.62713 6.82220 7.03846 7.25839 7.47749 8.91301 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005490 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.198685 B = 5098.976487 C = 6450.326818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.004 4.004 3 H 0.074 0.926 4 C -0.520 4.520 5 H 0.020 0.980 6 C 0.003 3.997 7 N -0.956 5.956 8 Si 0.961 3.039 9 H -0.261 1.261 10 H -0.303 1.303 11 H -0.219 1.219 12 C 0.529 3.471 13 O -0.567 6.567 14 N -0.710 5.710 15 C 0.171 3.829 16 C 0.517 3.483 17 O -0.581 6.581 18 N -0.608 5.608 19 C 0.048 3.952 20 C 0.048 3.952 21 O -0.394 6.394 22 C 0.064 3.936 23 C 0.069 3.931 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.114 4.114 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.266 0.734 33 H 0.419 0.581 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 10.236 -24.152 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.558 4.558 5 H 0.038 0.962 6 C -0.193 4.193 7 N -0.596 5.596 8 Si 0.785 3.215 9 H -0.187 1.187 10 H -0.231 1.231 11 H -0.142 1.142 12 C 0.318 3.682 13 O -0.443 6.443 14 N -0.370 5.370 15 C 0.082 3.918 16 C 0.306 3.694 17 O -0.460 6.460 18 N -0.341 5.341 19 C -0.074 4.074 20 C -0.029 4.029 21 O -0.313 6.313 22 C -0.014 4.014 23 C -0.054 4.054 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.121 0.879 49 H 0.095 0.905 50 H 0.105 0.895 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.341 8.919 -23.964 27.223 hybrid contribution 0.560 -0.440 1.422 1.590 sum -8.781 8.479 -22.543 25.636 Atomic orbital electron populations 1.22127 0.94263 1.01140 1.02132 1.19244 0.95437 0.97545 0.90349 0.90785 1.21061 1.31594 1.12527 0.90604 0.96172 1.26110 0.97527 1.00969 0.94698 1.70101 1.47773 1.42990 0.98782 0.85706 0.78600 0.78873 0.78358 1.18692 1.23086 1.14172 1.21132 0.77289 0.84711 0.85051 1.90653 1.41088 1.25867 1.86715 1.46302 1.63436 1.23667 1.03585 1.20458 0.94927 0.88199 0.88235 1.21319 0.81407 0.91878 0.74832 1.90620 1.62174 1.41782 1.51402 1.48083 1.08760 1.09688 1.67566 1.23442 0.93735 0.90011 1.00261 1.23351 0.93712 0.86071 0.99798 1.87950 1.42181 1.16549 1.84586 1.22954 0.90354 0.91963 0.96088 1.22346 0.96081 0.85792 1.01208 1.21633 0.93071 0.98817 1.01588 1.21491 0.99722 0.94047 0.99847 1.21555 0.96572 1.00604 0.96466 1.21586 0.94585 0.94471 1.04390 1.21965 1.02436 0.97288 0.93517 0.94291 0.93221 0.88853 0.92524 0.73958 0.91638 0.85660 0.90460 0.84858 0.91264 0.85888 0.89788 0.92726 0.94878 0.91270 0.92218 0.92587 0.91414 0.89997 0.87852 0.90539 0.89539 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 7.45 71.98 0.54 -4.34 16 2 C 0.00 -0.18 2.22 -12.29 -0.03 -0.20 16 3 H 0.07 2.87 7.20 -2.39 -0.02 2.85 16 4 C -0.52 -30.84 8.95 25.60 0.23 -30.61 16 5 H 0.02 1.44 7.02 -2.91 -0.02 1.42 16 6 C 0.00 0.17 5.45 84.66 0.46 0.63 16 7 N -0.96 -61.94 13.96 21.45 0.30 -61.64 16 8 Si 0.96 41.69 24.32 68.60 1.67 43.36 16 9 H -0.26 -10.61 6.92 99.48 0.69 -9.92 16 10 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.22 -7.79 6.53 99.48 0.65 -7.14 16 12 C 0.53 21.85 5.96 87.66 0.52 22.37 16 13 O -0.57 -30.70 12.75 -3.01 -0.04 -30.74 16 14 N -0.71 -19.38 1.79 -426.31 -0.76 -20.14 16 15 C 0.17 4.64 0.25 2.86 0.00 4.64 16 16 C 0.52 17.89 5.09 87.66 0.45 18.33 16 17 O -0.58 -25.38 15.47 -3.04 -0.05 -25.42 16 18 N -0.61 -17.73 3.01 -816.53 -2.46 -20.19 16 19 C 0.05 1.03 4.15 86.49 0.36 1.39 16 20 C 0.05 0.72 7.00 72.22 0.51 1.22 16 21 O -0.39 -8.14 10.74 -148.98 -1.60 -9.74 16 22 C 0.06 1.22 6.99 72.08 0.50 1.73 16 23 C 0.07 1.92 6.62 86.36 0.57 2.49 16 24 C -0.11 -3.58 3.97 30.59 0.12 -3.46 16 25 C -0.11 -2.74 5.77 30.59 0.18 -2.56 16 26 C -0.11 -1.69 5.92 30.60 0.18 -1.51 16 27 C -0.11 -1.19 5.75 30.59 0.18 -1.02 16 28 C -0.11 -1.73 4.53 30.60 0.14 -1.59 16 29 H 0.04 1.52 7.52 -2.39 -0.02 1.50 16 30 H 0.05 1.75 3.43 -2.39 -0.01 1.75 16 31 H 0.09 2.12 6.83 -2.39 -0.02 2.11 16 32 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 33 H 0.42 7.56 6.31 -92.71 -0.58 6.98 16 34 H 0.07 1.73 5.77 -2.39 -0.01 1.72 16 35 H 0.13 2.11 3.11 -2.39 -0.01 2.10 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.56 7.11 -2.39 -0.02 2.54 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.03 1.43 6.35 -2.38 -0.02 1.42 16 43 H 0.07 2.17 7.96 -2.39 -0.02 2.16 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.08 0.71 6.77 -2.39 -0.02 0.69 16 50 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.10 1.01 6.37 -2.39 -0.02 0.99 16 Total: -1.00 -92.30 367.74 2.25 -90.04 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.29 Total: 26.94 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.90 Total: 7.53 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -2.93 Total: -101.98 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: -1.69 Total: -65.90 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.67 Total: 43.36 kcal Total: -92.30 2.25 -90.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889206217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.092 kcal (2) G-P(sol) polarization free energy of solvation -92.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds