Wall clock time and date at job start Tue Mar 31 2020 21:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47301 * 2 1 4 4 C 1.50705 * 109.46962 * 240.00214 * 2 1 3 5 5 H 1.07998 * 119.99675 * 240.00112 * 4 2 1 6 6 C 1.37876 * 119.99801 * 60.00276 * 4 2 1 7 7 N 1.31513 * 120.00399 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99681 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47244 * 89.99784 * 8 6 4 10 10 H 1.48504 * 109.46629 * 209.99698 * 8 6 4 11 11 H 1.48495 * 109.47070 * 329.99482 * 8 6 4 12 12 C 1.50700 * 109.47255 * 120.00316 * 2 1 3 13 13 O 1.21283 * 120.00023 * 119.99971 * 12 2 1 14 14 N 1.34778 * 119.99863 * 299.99910 * 12 2 1 15 15 C 1.47849 * 134.36046 * 179.97438 * 14 12 2 16 16 C 1.52565 * 85.65874 * 156.39320 * 15 14 12 17 17 C 1.47842 * 134.36289 * 0.03010 * 14 12 2 18 18 C 1.53916 * 115.92648 * 264.97768 * 16 15 14 19 19 C 1.55157 * 101.43416 * 264.39824 * 18 16 15 20 20 N 1.47540 * 105.00870 * 324.38046 * 19 18 16 21 21 C 1.34781 * 125.66031 * 203.91823 * 20 19 18 22 22 O 1.21513 * 120.00048 * 179.97438 * 21 20 19 23 23 O 1.34639 * 119.99774 * 359.97438 * 21 20 19 24 24 C 1.45201 * 116.99832 * 180.02562 * 23 21 20 25 25 C 1.53001 * 109.47099 * 60.00312 * 24 23 21 26 26 C 1.53002 * 109.46750 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.46956 * 300.00013 * 24 23 21 28 28 C 1.47365 * 108.68318 * 23.91258 * 20 19 18 29 29 H 1.09003 * 109.47354 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46850 * 299.99450 * 1 2 3 32 32 H 0.97001 * 120.00321 * 180.02562 * 7 6 4 33 33 H 1.08999 * 113.84012 * 42.21288 * 15 14 12 34 34 H 1.08997 * 113.84608 * 270.57508 * 15 14 12 35 35 H 1.09002 * 113.84480 * 89.42398 * 17 14 12 36 36 H 1.09003 * 113.84456 * 317.78601 * 17 14 12 37 37 H 1.09000 * 111.01279 * 146.36280 * 18 16 15 38 38 H 1.09005 * 111.07982 * 22.46046 * 18 16 15 39 39 H 1.09003 * 110.33390 * 205.49754 * 19 18 16 40 40 H 1.09002 * 110.41826 * 83.30492 * 19 18 16 41 41 H 1.08999 * 109.47098 * 59.99855 * 25 24 23 42 42 H 1.08991 * 109.46812 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.46861 * 299.99916 * 25 24 23 44 44 H 1.08999 * 109.47625 * 60.00032 * 26 24 23 45 45 H 1.09003 * 109.46693 * 180.02562 * 26 24 23 46 46 H 1.09003 * 109.46937 * 299.99628 * 26 24 23 47 47 H 1.08997 * 109.47353 * 60.00367 * 27 24 23 48 48 H 1.09000 * 109.46411 * 180.02562 * 27 24 23 49 49 H 1.08999 * 109.47180 * 299.99821 * 27 24 23 50 50 H 1.09002 * 109.98231 * 117.31569 * 28 20 19 51 51 H 1.09004 * 109.98723 * 238.57759 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.0110 -0.6811 3.8357 16 6 1.7333 0.7676 4.2253 17 6 0.9024 0.8866 2.9512 18 6 2.9638 1.6877 4.3163 19 6 3.2845 1.6234 5.8330 20 7 1.9701 1.5428 6.4984 21 6 1.7074 1.9148 7.7669 22 8 0.5822 1.8037 8.2120 23 8 2.6918 2.4094 8.5409 24 6 2.3367 2.7889 9.8967 25 6 1.8006 1.5665 10.6446 26 6 3.5753 3.3254 10.6171 27 6 1.2599 3.8751 9.8568 28 6 0.9920 0.9882 5.5458 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7081 1.1611 -3.4844 33 1 3.0468 -0.9864 3.9839 34 1 1.2929 -1.3924 4.2436 35 1 -0.1531 0.6522 3.0900 36 1 1.0659 1.8148 2.4036 37 1 2.7151 2.7043 4.0117 38 1 3.7911 1.2957 3.7245 39 1 3.8133 2.5235 6.1468 40 1 3.8783 0.7378 6.0590 41 1 2.5677 0.7927 10.6730 42 1 1.5336 1.8515 11.6622 43 1 0.9181 1.1847 10.1312 44 1 3.9569 4.1963 10.0842 45 1 3.3088 3.6098 11.6350 46 1 4.3427 2.5518 10.6455 47 1 0.3775 3.4933 9.3434 48 1 0.9937 4.1603 10.8746 49 1 1.6419 4.7460 9.3240 50 1 0.6052 0.0399 5.9188 51 1 0.1732 1.6928 5.4000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889229325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:30 Heat of formation + Delta-G solvation = -98.609423 kcal Electronic energy + Delta-G solvation = -30277.950121 eV Core-core repulsion = 26178.023315 eV Total energy + Delta-G solvation = -4099.926806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20479 -41.45561 -39.66857 -38.19191 -36.90335 -35.76823 -34.96485 -32.84074 -31.73576 -30.41403 -28.32908 -28.26081 -27.62573 -27.36719 -27.04682 -24.67056 -23.74328 -22.66559 -20.49386 -20.36561 -19.71757 -18.68434 -18.36337 -17.81200 -17.52028 -17.46413 -16.97715 -16.71218 -16.33570 -16.02683 -15.65338 -15.24182 -15.14117 -14.72496 -14.56458 -14.34539 -14.13387 -13.90574 -13.76236 -13.66322 -13.39816 -13.31257 -13.07788 -12.95849 -12.87094 -12.83139 -12.71620 -12.69652 -12.54172 -12.40927 -12.29436 -12.22797 -12.19165 -12.03614 -12.00562 -11.52143 -11.35765 -11.08860 -11.02862 -10.59287 -10.26518 -9.79904 -9.59061 -8.15298 -6.25616 1.05137 1.40174 1.40894 1.52592 1.75471 1.87297 2.02117 2.44640 2.86015 3.13513 3.14656 3.41200 3.57111 3.76520 3.78842 3.83407 3.98176 4.09938 4.26469 4.40098 4.48194 4.51230 4.59367 4.62694 4.62931 4.65028 4.69381 4.73629 4.75502 4.78963 4.80034 4.87047 4.91187 4.91413 4.92384 4.98723 5.09647 5.10989 5.15287 5.17914 5.22395 5.31537 5.37445 5.48120 5.51647 5.73431 5.96839 6.23673 6.40039 6.75040 6.87214 7.25812 7.40383 7.49637 8.90255 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.033542 B = 0.002049 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.580947 B =13661.398906 C =13770.071194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.033 3.967 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.542 3.458 13 O -0.593 6.593 14 N -0.652 5.652 15 C 0.115 3.885 16 C -0.089 4.089 17 C 0.122 3.878 18 C -0.104 4.104 19 C 0.110 3.890 20 N -0.605 5.605 21 C 0.664 3.336 22 O -0.592 6.592 23 O -0.366 6.366 24 C 0.124 3.876 25 C -0.179 4.179 26 C -0.135 4.135 27 C -0.179 4.179 28 C 0.148 3.852 29 H 0.070 0.930 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 8.883 27.466 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.012 3.988 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.334 3.666 13 O -0.473 6.473 14 N -0.388 5.388 15 C -0.007 4.007 16 C -0.090 4.090 17 C 0.000 4.000 18 C -0.142 4.142 19 C -0.012 4.012 20 N -0.346 5.346 21 C 0.419 3.581 22 O -0.483 6.483 23 O -0.280 6.280 24 C 0.088 3.912 25 C -0.236 4.236 26 C -0.192 4.192 27 C -0.236 4.236 28 C 0.026 3.974 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.695 8.431 27.368 28.688 hybrid contribution 0.166 -0.722 -1.164 1.380 sum 1.861 7.709 26.204 27.378 Atomic orbital electron populations 1.21558 0.95084 0.99123 1.01788 1.18705 0.95246 0.95704 0.89111 0.94325 1.21288 1.31634 1.12692 0.91221 0.93602 1.25585 0.95229 0.95764 1.01355 1.69940 1.37109 1.23474 1.24305 0.85608 0.78605 0.78562 0.79177 1.20048 1.19847 1.20447 1.21321 0.78077 0.83026 0.84159 1.90510 1.41004 1.29032 1.86787 1.50244 1.52541 1.31912 1.04124 1.23167 1.02338 0.95825 0.79390 1.22339 0.97534 0.95822 0.93351 1.23210 0.96601 0.90121 0.90049 1.22494 0.96406 1.00257 0.95034 1.22472 0.83978 1.03449 0.91307 1.47303 1.13183 1.65208 1.08946 1.17611 0.82592 0.76886 0.80998 1.90899 1.22996 1.61074 1.73345 1.86319 1.38970 1.75874 1.26859 1.22428 0.97343 0.95102 0.76356 1.22466 1.02113 0.97343 1.01706 1.21878 0.94971 1.01797 1.00576 1.22466 0.99081 0.97826 1.04233 1.21622 0.90704 0.99746 0.85285 0.91127 0.96349 0.92732 0.92575 0.90454 0.88560 0.87479 0.88848 0.88488 0.89615 0.88938 0.90372 0.92101 0.89106 0.92004 0.91214 0.87985 0.91309 0.91974 0.89133 0.92002 0.90104 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.85 71.98 0.64 -4.71 16 2 C 0.03 1.68 2.47 -12.28 -0.03 1.65 16 3 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.53 -30.95 8.37 25.60 0.21 -30.73 16 5 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -50.81 11.32 21.45 0.24 -50.56 16 8 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 C 0.54 25.17 7.38 87.66 0.65 25.81 16 13 O -0.59 -32.49 16.19 -3.04 -0.05 -32.54 16 14 N -0.65 -21.61 3.58 -859.73 -3.07 -24.68 16 15 C 0.11 2.82 8.08 85.98 0.69 3.51 16 16 C -0.09 -1.68 0.98 -52.07 -0.05 -1.73 16 17 C 0.12 2.82 6.21 85.98 0.53 3.35 16 18 C -0.10 -1.76 6.42 31.64 0.20 -1.56 16 19 C 0.11 1.71 6.94 86.92 0.60 2.32 16 20 N -0.61 -11.73 3.34 -942.94 -3.15 -14.88 16 21 C 0.66 15.23 7.93 129.79 1.03 16.26 16 22 O -0.59 -16.16 12.21 19.80 0.24 -15.92 16 23 O -0.37 -7.37 9.42 -55.48 -0.52 -7.89 16 24 C 0.12 1.94 1.13 -10.79 -0.01 1.93 16 25 C -0.18 -2.80 8.37 71.98 0.60 -2.19 16 26 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 27 C -0.18 -2.76 8.37 71.98 0.60 -2.16 16 28 C 0.15 2.61 6.38 86.22 0.55 3.16 16 29 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 1.97 6.10 -2.39 -0.01 1.96 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 34 H 0.10 2.10 8.00 -2.39 -0.02 2.08 16 35 H 0.11 2.08 7.93 -2.39 -0.02 2.06 16 36 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.66 8.06 -2.38 -0.02 1.64 16 39 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 48 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 1.41 7.86 -2.39 -0.02 1.39 16 51 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -74.61 401.72 3.93 -70.68 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.91 Total: 12.89 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.31 Total: 15.80 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -5.98 Total: -90.12 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -0.33 Total: -56.35 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.61 3.93 -70.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889229325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.931 kcal (2) G-P(sol) polarization free energy of solvation -74.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds