Wall clock time and date at job start Tue Mar 31 2020 21:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46649 * 2 1 4 4 C 1.50696 * 109.47242 * 119.99695 * 2 1 3 5 5 H 1.08000 * 119.99837 * 28.27846 * 4 2 1 6 6 C 1.37876 * 120.00002 * 208.27987 * 4 2 1 7 7 N 1.31506 * 120.00159 * 353.78410 * 6 4 2 8 8 Si 1.86802 * 119.99917 * 173.50881 * 6 4 2 9 9 H 1.48503 * 109.47146 * 60.00088 * 8 6 4 10 10 H 1.48503 * 109.47095 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47245 * 300.00284 * 8 6 4 12 12 C 1.50697 * 109.47136 * 239.99838 * 2 1 3 13 13 O 1.21278 * 120.00218 * 239.99375 * 12 2 1 14 14 N 1.34776 * 119.99829 * 60.00163 * 12 2 1 15 15 C 1.47392 * 135.85604 * 359.62852 * 14 12 2 16 16 C 1.52078 * 87.41100 * 154.38914 * 15 14 12 17 17 C 1.47397 * 135.84897 * 179.97438 * 14 12 2 18 18 C 1.53512 * 117.21151 * 267.27754 * 16 15 14 19 19 C 1.54624 * 102.70546 * 262.93192 * 18 16 15 20 20 N 1.47156 * 107.37627 * 339.38494 * 19 18 16 21 21 C 1.34771 * 125.57776 * 179.04132 * 20 19 18 22 22 O 1.21511 * 119.99554 * 180.02562 * 21 20 19 23 23 O 1.34633 * 120.00803 * 0.02591 * 21 20 19 24 24 C 1.45200 * 117.00839 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46598 * 59.99787 * 24 23 21 26 26 C 1.52991 * 109.47340 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.46702 * 300.00386 * 24 23 21 28 28 C 1.47754 * 108.84042 * 359.09005 * 20 19 18 29 29 H 1.09002 * 109.46962 * 54.50731 * 1 2 3 30 30 H 1.09004 * 109.46891 * 174.50480 * 1 2 3 31 31 H 1.08992 * 109.47252 * 294.50214 * 1 2 3 32 32 H 0.97001 * 120.00418 * 1.10433 * 7 6 4 33 33 H 1.08997 * 113.54210 * 269.00088 * 15 14 12 34 34 H 1.08999 * 113.54249 * 39.67990 * 15 14 12 35 35 H 1.08994 * 113.54825 * 320.31999 * 17 14 12 36 36 H 1.09004 * 113.54317 * 90.93727 * 17 14 12 37 37 H 1.08999 * 110.76420 * 21.23450 * 18 16 15 38 38 H 1.08997 * 110.76280 * 144.62449 * 18 16 15 39 39 H 1.08997 * 109.87094 * 98.82918 * 19 18 16 40 40 H 1.09000 * 109.86646 * 219.94072 * 19 18 16 41 41 H 1.09001 * 109.47119 * 60.00411 * 25 24 23 42 42 H 1.09001 * 109.46380 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.47044 * 299.99918 * 25 24 23 44 44 H 1.09000 * 109.47224 * 60.00108 * 26 24 23 45 45 H 1.09005 * 109.47404 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.47107 * 300.00036 * 26 24 23 47 47 H 1.08996 * 109.47193 * 59.99595 * 27 24 23 48 48 H 1.09007 * 109.46685 * 179.97438 * 27 24 23 49 49 H 1.09000 * 109.47123 * 299.99440 * 27 24 23 50 50 H 1.09007 * 110.40415 * 263.50488 * 28 20 19 51 51 H 1.08997 * 110.40774 * 141.07732 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 1.4358 -1.4859 1.6876 6 6 3.2536 -0.3701 1.7726 7 7 4.0342 0.4854 1.1496 8 14 3.7959 -1.1184 3.3960 9 1 3.8618 -2.5960 3.2624 10 1 5.1366 -0.5935 3.7597 11 1 2.8202 -0.7604 4.4566 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2500 -2.4545 15 6 0.9076 0.8688 -2.9856 16 6 1.7690 0.7996 -4.2370 17 6 1.9900 -0.6497 -3.8447 18 6 3.0080 1.7045 -4.2872 19 6 2.5048 2.9259 -5.0908 20 7 1.3199 2.4949 -5.8495 21 6 0.5802 3.2777 -6.6597 22 8 -0.3822 2.8144 -7.2391 23 8 0.9074 4.5729 -6.8272 24 6 0.0664 5.3560 -7.7148 25 6 -1.3691 5.3597 -7.1854 26 6 0.5907 6.7918 -7.7790 27 6 0.0919 4.7411 -9.1156 28 6 1.0732 1.0639 -5.5768 29 1 -0.3633 0.5967 -0.8367 30 1 -0.3633 -1.0230 -0.0984 31 1 -0.3633 0.4262 0.9350 32 1 3.7441 0.8893 0.3168 33 1 -0.1371 0.6126 -3.1614 34 1 1.0274 1.7949 -2.4234 35 1 3.0134 -0.9914 -3.9996 36 1 1.2492 -1.3324 -4.2609 37 1 3.3111 2.0008 -3.2830 38 1 3.8271 1.2095 -4.8089 39 1 2.2347 3.7322 -4.4089 40 1 3.2815 3.2633 -5.7771 41 1 -1.3873 5.7977 -6.1875 42 1 -2.0005 5.9473 -7.8520 43 1 -1.7423 4.3367 -7.1401 44 1 1.6133 6.7887 -8.1563 45 1 -0.0409 7.3798 -8.4450 46 1 0.5729 7.2301 -6.7811 47 1 -0.2813 3.7180 -9.0701 48 1 -0.5398 5.3287 -9.7818 49 1 1.1146 4.7383 -9.4926 50 1 1.5116 0.4465 -6.3609 51 1 0.0035 0.8716 -5.4940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889229326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:34 Heat of formation + Delta-G solvation = -78.760883 kcal Electronic energy + Delta-G solvation = -30700.582708 eV Core-core repulsion = 26601.516599 eV Total energy + Delta-G solvation = -4099.066108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26531 -40.46596 -38.21245 -37.09937 -35.86891 -34.21941 -33.75871 -31.33572 -30.61274 -29.43306 -27.69990 -27.65126 -26.36513 -26.02267 -24.63582 -23.72902 -22.21428 -21.78477 -19.70172 -19.34027 -18.55920 -17.75218 -16.94673 -16.76988 -16.58402 -15.98576 -15.66668 -15.36644 -15.20740 -14.68809 -14.39911 -14.06731 -13.89863 -13.69570 -13.47289 -13.24378 -13.03804 -12.78294 -12.75783 -12.68087 -12.44612 -12.28840 -12.17770 -12.16022 -11.77371 -11.71508 -11.59093 -11.52549 -11.42192 -11.15681 -11.09721 -10.98131 -10.69974 -10.61072 -10.39171 -10.22621 -10.12152 -9.80889 -8.94403 -8.69192 -8.64884 -8.27164 -8.08437 -6.41114 -4.09271 1.86613 2.66506 3.37393 3.47574 3.52328 3.62705 3.67253 3.78152 4.11580 4.37681 4.42703 4.46959 4.49854 4.55523 4.61311 4.82187 5.00534 5.16844 5.19428 5.23023 5.24573 5.38134 5.39133 5.43958 5.46963 5.49904 5.51211 5.57026 5.58813 5.65502 5.68149 5.68489 5.76545 5.89794 5.91985 5.97699 6.00850 6.08647 6.10822 6.15708 6.25421 6.27785 6.41187 6.63964 7.09449 7.12231 7.27803 7.96898 8.14864 8.38921 8.52183 8.82138 9.36447 9.61967 10.99192 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.002372 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.618507 B =11800.658685 C =12033.277403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.017 3.983 3 H 0.055 0.945 4 C -0.572 4.572 5 H 0.054 0.946 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 1.072 2.928 9 H -0.287 1.287 10 H -0.282 1.282 11 H -0.287 1.287 12 C 0.534 3.466 13 O -0.523 6.523 14 N -0.655 5.655 15 C 0.123 3.877 16 C -0.117 4.117 17 C 0.116 3.884 18 C -0.103 4.103 19 C 0.108 3.892 20 N -0.603 5.603 21 C 0.669 3.331 22 O -0.570 6.570 23 O -0.361 6.361 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.141 4.141 27 C -0.183 4.183 28 C 0.146 3.854 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 11.787 -19.849 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.004 4.004 3 H 0.073 0.927 4 C -0.610 4.610 5 H 0.072 0.928 6 C -0.178 4.178 7 N -0.535 5.535 8 Si 0.899 3.101 9 H -0.213 1.213 10 H -0.208 1.208 11 H -0.213 1.213 12 C 0.326 3.674 13 O -0.395 6.395 14 N -0.395 5.395 15 C -0.001 4.001 16 C -0.118 4.118 17 C -0.008 4.008 18 C -0.141 4.141 19 C -0.015 4.015 20 N -0.344 5.344 21 C 0.424 3.576 22 O -0.460 6.460 23 O -0.276 6.276 24 C 0.099 3.901 25 C -0.241 4.241 26 C -0.198 4.198 27 C -0.240 4.240 28 C 0.024 3.976 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.096 0.904 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.957 11.102 -18.672 22.525 hybrid contribution -1.316 0.017 -1.376 1.904 sum -7.272 11.119 -20.048 24.051 Atomic orbital electron populations 1.21678 0.96571 1.00015 0.99968 1.19092 0.93006 0.97653 0.90680 0.92684 1.21575 1.06943 1.23028 1.09450 0.92817 1.25882 0.92765 0.95730 1.03461 1.70819 1.37003 1.27914 1.17772 0.83510 0.76175 0.75968 0.74405 1.21303 1.20773 1.21327 1.22721 0.78623 0.84335 0.81672 1.90560 1.37348 1.26590 1.85045 1.50412 1.53222 1.31641 1.04236 1.22620 0.95158 0.91689 0.90631 1.22310 0.97461 0.97839 0.94205 1.22442 1.01939 0.93294 0.83080 1.22222 0.96095 0.94020 1.01733 1.22145 0.86832 0.97824 0.94687 1.47220 1.30098 1.10602 1.46466 1.17461 0.80973 0.80324 0.78845 1.90898 1.29085 1.74917 1.51053 1.86320 1.56306 1.20650 1.64282 1.22072 0.89735 0.89934 0.88385 1.22518 0.94984 1.05109 1.01455 1.21856 1.02179 0.92484 1.03250 1.22515 1.02583 1.04002 0.94905 1.21848 1.01493 0.78770 0.95476 0.95036 0.94031 0.92494 0.92422 0.90261 0.90432 0.90522 0.90423 0.88793 0.89648 0.90843 0.90994 0.92088 0.91199 0.89360 0.91489 0.90167 0.91393 0.89390 0.91189 0.92235 0.90382 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.99 37.16 0.33 -2.19 16 2 C 0.02 0.42 2.17 -92.92 -0.20 0.22 16 3 H 0.06 1.40 6.85 -51.93 -0.36 1.05 16 4 C -0.57 -16.27 7.54 -34.44 -0.26 -16.53 16 5 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 6 C 0.03 0.78 5.45 -17.82 -0.10 0.69 16 7 N -0.90 -27.22 13.61 55.43 0.75 -26.47 16 8 Si 1.07 25.78 29.91 -169.99 -5.08 20.70 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.53 12.96 7.29 -10.99 -0.08 12.88 16 13 O -0.52 -15.08 16.81 5.56 0.09 -14.99 16 14 N -0.65 -11.95 3.65 -185.69 -0.68 -12.63 16 15 C 0.12 1.68 6.14 -7.32 -0.04 1.64 16 16 C -0.12 -1.35 1.06 -155.22 -0.16 -1.51 16 17 C 0.12 1.64 8.02 -7.47 -0.06 1.58 16 18 C -0.10 -1.12 6.40 -25.61 -0.16 -1.28 16 19 C 0.11 1.07 6.91 -2.83 -0.02 1.05 16 20 N -0.60 -6.78 3.34 -176.76 -0.59 -7.37 16 21 C 0.67 8.42 7.93 54.05 0.43 8.85 16 22 O -0.57 -8.12 12.16 -19.28 -0.23 -8.36 16 23 O -0.36 -4.13 9.48 -40.30 -0.38 -4.52 16 24 C 0.14 1.24 1.13 -90.62 -0.10 1.14 16 25 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 26 C -0.14 -0.93 8.85 37.15 0.33 -0.60 16 27 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 28 C 0.15 1.51 6.36 -3.22 -0.02 1.49 16 29 H 0.03 0.53 6.51 -51.93 -0.34 0.19 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.26 7.91 6.67 -40.82 -0.27 7.64 16 33 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.97 5.88 -51.93 -0.31 0.67 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 LS Contribution 405.19 15.07 6.11 6.11 Total: -1.00 -35.45 405.19 -8.31 -43.76 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.80 Total: -1.02 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 0.50 Total: 4.79 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.51 Total: -46.47 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.52 Total: -27.86 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.45 -8.31 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889229326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.002 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds