Wall clock time and date at job start Tue Mar 31 2020 21:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46649 * 2 1 4 4 C 1.50696 * 109.47242 * 119.99695 * 2 1 3 5 5 H 1.08000 * 119.99837 * 28.27846 * 4 2 1 6 6 C 1.37876 * 120.00002 * 208.27987 * 4 2 1 7 7 N 1.31506 * 120.00159 * 353.78410 * 6 4 2 8 8 Si 1.86802 * 119.99917 * 173.50881 * 6 4 2 9 9 H 1.48503 * 109.47146 * 60.00088 * 8 6 4 10 10 H 1.48503 * 109.47095 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47245 * 300.00284 * 8 6 4 12 12 C 1.50697 * 109.47136 * 239.99838 * 2 1 3 13 13 O 1.21278 * 120.00218 * 239.99375 * 12 2 1 14 14 N 1.34776 * 119.99829 * 60.00163 * 12 2 1 15 15 C 1.47392 * 135.85604 * 359.62852 * 14 12 2 16 16 C 1.52078 * 87.41100 * 154.38914 * 15 14 12 17 17 C 1.47397 * 135.84897 * 179.97438 * 14 12 2 18 18 C 1.53512 * 117.21151 * 267.27754 * 16 15 14 19 19 C 1.54624 * 102.70546 * 262.93192 * 18 16 15 20 20 N 1.47156 * 107.37627 * 339.38494 * 19 18 16 21 21 C 1.34771 * 125.57776 * 179.04132 * 20 19 18 22 22 O 1.21511 * 119.99554 * 180.02562 * 21 20 19 23 23 O 1.34633 * 120.00803 * 0.02591 * 21 20 19 24 24 C 1.45200 * 117.00839 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46598 * 59.99787 * 24 23 21 26 26 C 1.52991 * 109.47340 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.46702 * 300.00386 * 24 23 21 28 28 C 1.47754 * 108.84042 * 359.09005 * 20 19 18 29 29 H 1.09002 * 109.46962 * 54.50731 * 1 2 3 30 30 H 1.09004 * 109.46891 * 174.50480 * 1 2 3 31 31 H 1.08992 * 109.47252 * 294.50214 * 1 2 3 32 32 H 0.97001 * 120.00418 * 1.10433 * 7 6 4 33 33 H 1.08997 * 113.54210 * 269.00088 * 15 14 12 34 34 H 1.08999 * 113.54249 * 39.67990 * 15 14 12 35 35 H 1.08994 * 113.54825 * 320.31999 * 17 14 12 36 36 H 1.09004 * 113.54317 * 90.93727 * 17 14 12 37 37 H 1.08999 * 110.76420 * 21.23450 * 18 16 15 38 38 H 1.08997 * 110.76280 * 144.62449 * 18 16 15 39 39 H 1.08997 * 109.87094 * 98.82918 * 19 18 16 40 40 H 1.09000 * 109.86646 * 219.94072 * 19 18 16 41 41 H 1.09001 * 109.47119 * 60.00411 * 25 24 23 42 42 H 1.09001 * 109.46380 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.47044 * 299.99918 * 25 24 23 44 44 H 1.09000 * 109.47224 * 60.00108 * 26 24 23 45 45 H 1.09005 * 109.47404 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.47107 * 300.00036 * 26 24 23 47 47 H 1.08996 * 109.47193 * 59.99595 * 27 24 23 48 48 H 1.09007 * 109.46685 * 179.97438 * 27 24 23 49 49 H 1.09000 * 109.47123 * 299.99440 * 27 24 23 50 50 H 1.09007 * 110.40415 * 263.50488 * 28 20 19 51 51 H 1.08997 * 110.40774 * 141.07732 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 1.4358 -1.4859 1.6876 6 6 3.2536 -0.3701 1.7726 7 7 4.0342 0.4854 1.1496 8 14 3.7959 -1.1184 3.3960 9 1 3.8618 -2.5960 3.2624 10 1 5.1366 -0.5935 3.7597 11 1 2.8202 -0.7604 4.4566 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2500 -2.4545 15 6 0.9076 0.8688 -2.9856 16 6 1.7690 0.7996 -4.2370 17 6 1.9900 -0.6497 -3.8447 18 6 3.0080 1.7045 -4.2872 19 6 2.5048 2.9259 -5.0908 20 7 1.3199 2.4949 -5.8495 21 6 0.5802 3.2777 -6.6597 22 8 -0.3822 2.8144 -7.2391 23 8 0.9074 4.5729 -6.8272 24 6 0.0664 5.3560 -7.7148 25 6 -1.3691 5.3597 -7.1854 26 6 0.5907 6.7918 -7.7790 27 6 0.0919 4.7411 -9.1156 28 6 1.0732 1.0639 -5.5768 29 1 -0.3633 0.5967 -0.8367 30 1 -0.3633 -1.0230 -0.0984 31 1 -0.3633 0.4262 0.9350 32 1 3.7441 0.8893 0.3168 33 1 -0.1371 0.6126 -3.1614 34 1 1.0274 1.7949 -2.4234 35 1 3.0134 -0.9914 -3.9996 36 1 1.2492 -1.3324 -4.2609 37 1 3.3111 2.0008 -3.2830 38 1 3.8271 1.2095 -4.8089 39 1 2.2347 3.7322 -4.4089 40 1 3.2815 3.2633 -5.7771 41 1 -1.3873 5.7977 -6.1875 42 1 -2.0005 5.9473 -7.8520 43 1 -1.7423 4.3367 -7.1401 44 1 1.6133 6.7887 -8.1563 45 1 -0.0409 7.3798 -8.4450 46 1 0.5729 7.2301 -6.7811 47 1 -0.2813 3.7180 -9.0701 48 1 -0.5398 5.3287 -9.7818 49 1 1.1146 4.7383 -9.4926 50 1 1.5116 0.4465 -6.3609 51 1 0.0035 0.8716 -5.4940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889229326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:33 Heat of formation + Delta-G solvation = -101.659091 kcal Electronic energy + Delta-G solvation = -30701.575648 eV Core-core repulsion = 26601.516599 eV Total energy + Delta-G solvation = -4100.059049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31078 -41.50923 -39.70174 -38.24959 -36.97542 -35.80947 -34.98448 -33.08527 -31.87865 -30.50956 -28.33424 -28.27214 -27.64647 -27.25085 -26.64910 -24.79207 -23.85746 -22.65854 -20.73883 -20.52499 -19.81026 -18.79723 -18.68330 -17.75436 -17.73313 -17.45648 -16.87820 -16.55699 -16.10838 -15.97500 -15.71362 -15.63124 -15.22761 -14.83311 -14.55706 -14.40529 -14.22189 -14.08995 -13.81548 -13.67541 -13.59096 -13.32387 -13.10203 -12.99227 -12.89219 -12.85899 -12.84098 -12.65333 -12.59611 -12.43184 -12.27813 -12.26402 -12.12221 -12.00146 -11.76584 -11.49479 -11.36680 -11.10414 -10.75372 -10.72354 -10.27556 -9.80365 -9.61131 -8.67046 -6.34384 1.03238 1.50843 1.59567 1.73580 1.78611 1.92887 2.01062 2.57316 2.80653 3.06382 3.19081 3.39227 3.54817 3.77331 3.77919 3.82667 3.97352 4.05870 4.18329 4.38523 4.39626 4.43051 4.47469 4.49732 4.55737 4.58328 4.62010 4.64284 4.64531 4.69662 4.73269 4.78010 4.79283 4.85014 4.88574 4.90318 4.94479 5.01505 5.10122 5.11384 5.19458 5.27145 5.30821 5.36316 5.40621 5.47158 5.92821 6.14356 6.37492 6.53857 6.89002 7.23982 7.43105 7.54831 8.74555 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.002372 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.618507 B =11800.658685 C =12033.277403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.009 3.991 3 H 0.041 0.959 4 C -0.587 4.587 5 H 0.042 0.958 6 C -0.025 4.025 7 N -0.926 5.926 8 Si 1.112 2.888 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.260 1.260 12 C 0.533 3.467 13 O -0.585 6.585 14 N -0.660 5.660 15 C 0.118 3.882 16 C -0.095 4.095 17 C 0.114 3.886 18 C -0.102 4.102 19 C 0.114 3.886 20 N -0.604 5.604 21 C 0.665 3.335 22 O -0.590 6.590 23 O -0.367 6.367 24 C 0.124 3.876 25 C -0.179 4.179 26 C -0.136 4.136 27 C -0.178 4.178 28 C 0.152 3.848 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.254 0.746 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.095 0.905 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 13.092 -21.489 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.013 4.013 3 H 0.059 0.941 4 C -0.625 4.625 5 H 0.060 0.940 6 C -0.224 4.224 7 N -0.563 5.563 8 Si 0.934 3.066 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.184 1.184 12 C 0.325 3.675 13 O -0.463 6.463 14 N -0.397 5.397 15 C -0.004 4.004 16 C -0.096 4.096 17 C -0.008 4.008 18 C -0.140 4.140 19 C -0.008 4.008 20 N -0.345 5.345 21 C 0.420 3.580 22 O -0.481 6.481 23 O -0.282 6.282 24 C 0.088 3.912 25 C -0.237 4.237 26 C -0.193 4.193 27 C -0.235 4.235 28 C 0.031 3.969 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.113 0.887 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.121 12.463 -20.366 24.916 hybrid contribution -1.053 -0.329 -1.018 1.501 sum -8.174 12.134 -21.384 25.910 Atomic orbital electron populations 1.21561 0.93334 1.00485 1.01719 1.19073 0.95709 0.96242 0.90247 0.94066 1.21920 1.06846 1.22654 1.11094 0.93965 1.27224 0.93207 0.95740 1.06254 1.70929 1.37679 1.29697 1.17984 0.83012 0.76487 0.75313 0.71803 1.21020 1.20684 1.18428 1.22146 0.78245 0.83550 0.83517 1.90516 1.40170 1.29179 1.86445 1.50128 1.52740 1.32541 1.04335 1.22977 0.96348 0.90093 0.90974 1.22036 0.97379 0.96031 0.94173 1.22737 1.02472 0.95483 0.80147 1.22212 0.96229 0.94472 1.01051 1.22123 0.86771 0.97161 0.94720 1.47268 1.30179 1.10820 1.46267 1.17591 0.80816 0.80714 0.78830 1.90895 1.29954 1.75377 1.51878 1.86329 1.56881 1.20155 1.64788 1.22430 0.89711 0.90949 0.88149 1.22472 0.95349 1.03828 1.02017 1.21881 1.02745 0.90817 1.03848 1.22461 1.03027 1.02828 0.95197 1.21812 1.01622 0.78766 0.94698 0.91591 0.94428 0.92128 0.93601 0.87736 0.90474 0.91242 0.87832 0.90746 0.88468 0.90787 0.89556 0.92233 0.89060 0.91871 0.91223 0.87908 0.91465 0.91887 0.89084 0.91997 0.88667 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 8.99 71.98 0.65 -3.85 16 2 C 0.01 0.44 2.17 -12.29 -0.03 0.41 16 3 H 0.04 2.16 6.85 -2.39 -0.02 2.15 16 4 C -0.59 -34.22 7.54 25.60 0.19 -34.02 16 5 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 6 C -0.03 -1.49 5.45 84.66 0.46 -1.03 16 7 N -0.93 -57.65 13.61 21.45 0.29 -57.36 16 8 Si 1.11 52.55 29.91 68.60 2.05 54.60 16 9 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 C 0.53 26.36 7.29 87.66 0.64 27.00 16 13 O -0.58 -34.89 16.81 -3.02 -0.05 -34.94 16 14 N -0.66 -23.71 3.65 -859.78 -3.14 -26.85 16 15 C 0.12 3.01 6.14 83.77 0.51 3.53 16 16 C -0.09 -1.99 1.06 -52.62 -0.06 -2.05 16 17 C 0.11 3.04 8.02 83.67 0.67 3.71 16 18 C -0.10 -2.06 6.40 31.32 0.20 -1.86 16 19 C 0.11 2.04 6.91 86.81 0.60 2.64 16 20 N -0.60 -12.30 3.34 -943.57 -3.15 -15.45 16 21 C 0.66 15.72 7.93 129.79 1.03 16.75 16 22 O -0.59 -16.17 12.16 19.81 0.24 -15.93 16 23 O -0.37 -7.82 9.48 -55.42 -0.53 -8.35 16 24 C 0.12 2.04 1.13 -10.79 -0.01 2.03 16 25 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 26 C -0.14 -1.45 8.85 71.98 0.64 -0.82 16 27 C -0.18 -2.80 8.37 71.98 0.60 -2.20 16 28 C 0.15 2.75 6.36 86.23 0.55 3.30 16 29 H 0.07 2.11 6.51 -2.39 -0.02 2.09 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.25 15.79 6.67 -92.71 -0.62 15.17 16 33 H 0.10 2.22 8.04 -2.39 -0.02 2.20 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 48 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.09 1.63 7.94 -2.39 -0.02 1.61 16 Total: -1.00 -80.35 405.19 4.02 -76.33 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.05 Total: 16.78 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 7.25 Total: 11.17 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -6.00 Total: -99.67 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -0.34 Total: -59.22 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.05 Total: 54.60 kcal Total: -80.35 4.02 -76.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889229326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.332 kcal (2) G-P(sol) polarization free energy of solvation -80.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds