Wall clock time and date at job start Tue Mar 31 2020 21:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.50696 * 109.47137 * 119.99661 * 2 1 3 5 5 H 1.08007 * 120.00211 * 119.99967 * 4 2 1 6 6 C 1.37882 * 120.00228 * 300.00446 * 4 2 1 7 7 N 1.31517 * 119.99770 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47448 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47170 * 120.00084 * 8 6 4 11 11 H 1.48498 * 109.47452 * 239.99766 * 8 6 4 12 12 C 1.50692 * 109.47316 * 239.99884 * 2 1 3 13 13 O 1.21279 * 120.00193 * 239.99657 * 12 2 1 14 14 N 1.34778 * 120.00178 * 60.00131 * 12 2 1 15 15 C 1.46498 * 120.00298 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.68304 * 322.99570 * 15 14 12 17 17 C 1.54851 * 110.62729 * 200.01017 * 15 14 12 18 18 C 1.55847 * 103.44735 * 241.51048 * 17 15 14 19 19 H 1.09001 * 115.55879 * 201.18825 * 18 17 15 20 20 C 1.55837 * 105.06360 * 72.57630 * 18 17 15 21 21 C 1.58511 * 102.75604 * 287.92952 * 20 18 17 22 22 C 1.55840 * 102.75428 * 359.97438 * 21 20 18 23 23 H 1.09008 * 115.56457 * 200.68435 * 22 21 20 24 24 N 1.50238 * 101.75656 * 327.07764 * 22 21 20 25 25 C 1.34773 * 130.84103 * 233.44669 * 24 22 21 26 26 O 1.21508 * 120.00007 * 359.97438 * 25 24 22 27 27 O 1.34640 * 120.00164 * 179.97438 * 25 24 22 28 28 C 1.45196 * 116.99951 * 180.02562 * 27 25 24 29 29 C 1.52991 * 109.47577 * 59.99729 * 28 27 25 30 30 C 1.53005 * 109.46718 * 179.97438 * 28 27 25 31 31 C 1.52996 * 109.46880 * 299.99431 * 28 27 25 32 32 H 1.08996 * 109.47092 * 299.99880 * 1 2 3 33 33 H 1.09004 * 109.47016 * 60.00136 * 1 2 3 34 34 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 35 35 H 0.97002 * 119.99607 * 180.02562 * 7 6 4 36 36 H 0.97004 * 119.99611 * 359.97438 * 14 12 2 37 37 H 1.08996 * 110.62697 * 0.02562 * 17 15 14 38 38 H 1.09001 * 110.62900 * 123.01724 * 17 15 14 39 39 H 1.08994 * 110.62906 * 46.66689 * 20 18 17 40 40 H 1.09000 * 110.62832 * 169.53176 * 20 18 17 41 41 H 1.09004 * 111.39272 * 241.53874 * 21 20 18 42 42 H 1.08997 * 110.52365 * 118.06024 * 21 20 18 43 43 H 1.09004 * 109.47021 * 59.99813 * 29 28 27 44 44 H 1.08994 * 109.47279 * 179.97438 * 29 28 27 45 45 H 1.08999 * 109.47457 * 300.00167 * 29 28 27 46 46 H 1.09003 * 109.46798 * 60.00079 * 30 28 27 47 47 H 1.09007 * 109.46769 * 179.97438 * 30 28 27 48 48 H 1.08993 * 109.47304 * 299.99253 * 30 28 27 49 49 H 1.08996 * 109.47365 * 60.00452 * 31 28 27 50 50 H 1.09007 * 109.47253 * 180.02562 * 31 28 27 51 51 H 1.08995 * 109.47603 * 300.00385 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1202 4.0079 9 1 3.1455 -2.2875 3.6039 10 1 3.1465 -0.1872 4.8166 11 1 1.1661 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1948 -0.9409 -3.6507 16 1 3.2080 -1.3113 -3.4949 17 6 2.1398 -0.0040 -4.8824 18 6 1.1567 -0.7321 -5.8479 19 1 1.2377 -0.4543 -6.8988 20 6 -0.2522 -0.5437 -5.2092 21 6 -0.1960 -1.5027 -3.9484 22 6 1.2372 -2.1079 -4.0401 23 1 1.3890 -3.0417 -3.4985 24 7 1.4484 -2.1708 -5.5263 25 6 1.8055 -3.1973 -6.3231 26 8 2.0125 -4.2947 -5.8442 27 8 1.9330 -3.0070 -7.6499 28 6 2.3200 -4.1574 -8.4467 29 6 1.2740 -5.2626 -8.2886 30 6 2.4127 -3.7503 -9.9186 31 6 3.6808 -4.6715 -7.9726 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.7094 1.1619 3.4844 36 1 1.1489 0.5385 -2.5435 37 1 1.7500 0.9748 -4.6032 38 1 3.1258 0.0902 -5.3375 39 1 -0.4020 0.4932 -4.9086 40 1 -1.0330 -0.8580 -5.9018 41 1 -0.9489 -2.2882 -4.0124 42 1 -0.3135 -0.9310 -3.0279 43 1 0.3045 -4.8962 -8.6263 44 1 1.5644 -6.1260 -8.8871 45 1 1.2075 -5.5527 -7.2400 46 1 3.1578 -2.9627 -10.0315 47 1 2.7037 -4.6139 -10.5168 48 1 1.4431 -3.3843 -10.2561 49 1 3.6145 -4.9616 -6.9240 50 1 3.9717 -5.5349 -8.5711 51 1 4.4261 -3.8842 -8.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890282450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:10 Heat of formation + Delta-G solvation = -96.212564 kcal Electronic energy + Delta-G solvation = -31117.967742 eV Core-core repulsion = 27018.144872 eV Total energy + Delta-G solvation = -4099.822870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20896 -40.14309 -38.34116 -36.71129 -34.30278 -33.75137 -33.62009 -31.05247 -30.65888 -29.97547 -28.51349 -27.64410 -27.56983 -25.14590 -24.01744 -22.88347 -21.90324 -21.40134 -19.72731 -19.42431 -19.18600 -18.06068 -16.61809 -16.46217 -16.32200 -16.07922 -15.59137 -15.30358 -15.18270 -14.49725 -14.35564 -14.03323 -13.88052 -13.67659 -13.12625 -12.92508 -12.72928 -12.72157 -12.52701 -12.42392 -12.36080 -12.16368 -12.10463 -11.99590 -11.78496 -11.63245 -11.52348 -11.42996 -11.18224 -11.01913 -10.92428 -10.74291 -10.65808 -10.51620 -10.31780 -10.22668 -10.06591 -9.95970 -9.15991 -8.96978 -8.63297 -8.40068 -8.32355 -6.03923 -4.06554 1.90578 2.82283 3.32616 3.40418 3.48746 3.58659 3.67034 3.90808 4.35739 4.47236 4.48891 4.50811 4.50995 4.57665 4.68461 4.87632 4.99429 5.06868 5.13201 5.21765 5.25136 5.29992 5.30348 5.38032 5.44528 5.45187 5.52406 5.62805 5.64964 5.73971 5.77681 5.80231 5.94875 5.97227 6.07925 6.10241 6.14521 6.21467 6.31274 6.39330 6.58892 6.79615 6.89994 7.03071 7.45640 7.56314 7.74555 7.97732 8.12608 8.31304 8.41811 9.03268 9.20841 9.59350 11.03687 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.002577 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.493923 B =10863.818241 C =11469.005937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.540 6.540 14 N -0.735 5.735 15 C 0.135 3.865 16 H 0.093 0.907 17 C -0.138 4.138 18 C 0.126 3.874 19 H 0.119 0.881 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.143 3.857 23 H 0.122 0.878 24 N -0.615 5.615 25 C 0.677 3.323 26 O -0.568 6.568 27 O -0.365 6.365 28 C 0.136 3.864 29 C -0.183 4.183 30 C -0.139 4.139 31 C -0.184 4.184 32 H 0.093 0.907 33 H 0.012 0.988 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 -1.614 -24.924 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.415 6.415 14 N -0.390 5.390 15 C 0.028 3.972 16 H 0.111 0.889 17 C -0.177 4.177 18 C 0.023 3.977 19 H 0.137 0.863 20 C -0.169 4.169 21 C -0.173 4.173 22 C 0.040 3.960 23 H 0.140 0.860 24 N -0.357 5.357 25 C 0.432 3.568 26 O -0.457 6.457 27 O -0.280 6.280 28 C 0.099 3.901 29 C -0.240 4.240 30 C -0.196 4.196 31 C -0.241 4.241 32 H 0.112 0.888 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.584 -2.757 -24.702 24.906 hybrid contribution 0.038 -0.111 0.682 0.692 sum -1.546 -2.868 -24.021 24.241 Atomic orbital electron populations 1.21750 0.96514 0.99828 1.00919 1.18875 0.94131 0.96828 0.89309 0.93001 1.21190 1.30832 1.12769 0.88974 0.90734 1.24944 0.95131 0.95068 0.99122 1.69876 1.37235 1.23117 1.23421 0.86417 0.78631 0.79819 0.82516 1.19552 1.21089 1.21075 1.22057 0.78333 0.84311 0.84422 1.90559 1.37542 1.26720 1.86630 1.46397 1.55340 1.32175 1.05046 1.22005 0.98429 0.91796 0.85005 0.88907 1.23260 1.00370 0.98738 0.95356 1.23701 0.95037 0.79537 0.99422 0.86301 1.23563 0.95873 1.00223 0.97274 1.23589 0.95712 0.99140 0.98834 1.24050 0.95598 0.99669 0.76642 0.85977 1.49166 1.69955 1.08395 1.08195 1.17326 0.76409 0.82763 0.80267 1.90914 1.56140 1.23198 1.75447 1.86284 1.82627 1.41329 1.17726 1.22037 0.94990 0.83460 0.89605 1.22513 0.98177 0.98025 1.05320 1.21847 1.03147 1.02584 0.92045 1.22519 0.95233 1.01547 1.04812 0.88846 0.96946 0.94947 0.93046 0.76776 0.89234 0.90272 0.89858 0.91192 0.91145 0.88649 0.92298 0.91247 0.89311 0.91527 0.90222 0.91569 0.89256 0.91247 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.87 37.16 0.33 -2.53 16 2 C 0.03 0.71 2.64 -92.93 -0.25 0.46 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 4 C -0.50 -13.90 8.37 -34.44 -0.29 -14.19 16 5 H 0.07 2.22 6.75 -52.48 -0.35 1.86 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.52 11.12 7.14 -10.99 -0.08 11.05 16 13 O -0.54 -13.65 15.19 5.56 0.08 -13.57 16 14 N -0.73 -11.41 3.49 -51.37 -0.18 -11.59 16 15 C 0.13 1.90 3.08 -65.40 -0.20 1.70 16 16 H 0.09 1.56 7.71 -51.93 -0.40 1.16 16 17 C -0.14 -1.38 6.20 -24.24 -0.15 -1.53 16 18 C 0.13 1.22 5.28 -62.78 -0.33 0.89 16 19 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.13 -1.18 6.63 -22.17 -0.15 -1.33 16 21 C -0.13 -1.61 6.52 -22.17 -0.14 -1.75 16 22 C 0.14 2.06 5.12 -62.77 -0.32 1.74 16 23 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 24 N -0.62 -8.12 2.92 -151.82 -0.44 -8.57 16 25 C 0.68 9.95 8.13 54.05 0.44 10.39 16 26 O -0.57 -9.81 12.48 -19.28 -0.24 -10.05 16 27 O -0.36 -4.57 9.76 -40.32 -0.39 -4.96 16 28 C 0.14 1.40 1.13 -90.62 -0.10 1.30 16 29 C -0.18 -1.86 8.37 37.15 0.31 -1.55 16 30 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 31 C -0.18 -1.93 8.37 37.16 0.31 -1.61 16 32 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 33 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.40 5.12 7.42 -40.82 -0.30 4.82 16 37 H 0.09 0.73 7.32 -51.93 -0.38 0.35 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.61 7.81 -51.93 -0.41 0.20 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.20 6.43 -51.93 -0.33 0.87 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -32.55 397.16 -8.51 -41.06 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.55 Total: 5.24 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.38 Total: 3.86 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.00 Total: -44.27 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.55 Total: -28.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.55 -8.51 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890282450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.150 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds