Wall clock time and date at job start Tue Mar 31 2020 21:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.50696 * 109.47137 * 119.99661 * 2 1 3 5 5 H 1.08007 * 120.00211 * 119.99967 * 4 2 1 6 6 C 1.37882 * 120.00228 * 300.00446 * 4 2 1 7 7 N 1.31517 * 119.99770 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47448 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47170 * 120.00084 * 8 6 4 11 11 H 1.48498 * 109.47452 * 239.99766 * 8 6 4 12 12 C 1.50692 * 109.47316 * 239.99884 * 2 1 3 13 13 O 1.21279 * 120.00193 * 239.99657 * 12 2 1 14 14 N 1.34778 * 120.00178 * 60.00131 * 12 2 1 15 15 C 1.46498 * 120.00298 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.68304 * 322.99570 * 15 14 12 17 17 C 1.54851 * 110.62729 * 200.01017 * 15 14 12 18 18 C 1.55847 * 103.44735 * 241.51048 * 17 15 14 19 19 H 1.09001 * 115.55879 * 201.18825 * 18 17 15 20 20 C 1.55837 * 105.06360 * 72.57630 * 18 17 15 21 21 C 1.58511 * 102.75604 * 287.92952 * 20 18 17 22 22 C 1.55840 * 102.75428 * 359.97438 * 21 20 18 23 23 H 1.09008 * 115.56457 * 200.68435 * 22 21 20 24 24 N 1.50238 * 101.75656 * 327.07764 * 22 21 20 25 25 C 1.34773 * 130.84103 * 233.44669 * 24 22 21 26 26 O 1.21508 * 120.00007 * 359.97438 * 25 24 22 27 27 O 1.34640 * 120.00164 * 179.97438 * 25 24 22 28 28 C 1.45196 * 116.99951 * 180.02562 * 27 25 24 29 29 C 1.52991 * 109.47577 * 59.99729 * 28 27 25 30 30 C 1.53005 * 109.46718 * 179.97438 * 28 27 25 31 31 C 1.52996 * 109.46880 * 299.99431 * 28 27 25 32 32 H 1.08996 * 109.47092 * 299.99880 * 1 2 3 33 33 H 1.09004 * 109.47016 * 60.00136 * 1 2 3 34 34 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 35 35 H 0.97002 * 119.99607 * 180.02562 * 7 6 4 36 36 H 0.97004 * 119.99611 * 359.97438 * 14 12 2 37 37 H 1.08996 * 110.62697 * 0.02562 * 17 15 14 38 38 H 1.09001 * 110.62900 * 123.01724 * 17 15 14 39 39 H 1.08994 * 110.62906 * 46.66689 * 20 18 17 40 40 H 1.09000 * 110.62832 * 169.53176 * 20 18 17 41 41 H 1.09004 * 111.39272 * 241.53874 * 21 20 18 42 42 H 1.08997 * 110.52365 * 118.06024 * 21 20 18 43 43 H 1.09004 * 109.47021 * 59.99813 * 29 28 27 44 44 H 1.08994 * 109.47279 * 179.97438 * 29 28 27 45 45 H 1.08999 * 109.47457 * 300.00167 * 29 28 27 46 46 H 1.09003 * 109.46798 * 60.00079 * 30 28 27 47 47 H 1.09007 * 109.46769 * 179.97438 * 30 28 27 48 48 H 1.08993 * 109.47304 * 299.99253 * 30 28 27 49 49 H 1.08996 * 109.47365 * 60.00452 * 31 28 27 50 50 H 1.09007 * 109.47253 * 180.02562 * 31 28 27 51 51 H 1.08995 * 109.47603 * 300.00385 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1202 4.0079 9 1 3.1455 -2.2875 3.6039 10 1 3.1465 -0.1872 4.8166 11 1 1.1661 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1948 -0.9409 -3.6507 16 1 3.2080 -1.3113 -3.4949 17 6 2.1398 -0.0040 -4.8824 18 6 1.1567 -0.7321 -5.8479 19 1 1.2377 -0.4543 -6.8988 20 6 -0.2522 -0.5437 -5.2092 21 6 -0.1960 -1.5027 -3.9484 22 6 1.2372 -2.1079 -4.0401 23 1 1.3890 -3.0417 -3.4985 24 7 1.4484 -2.1708 -5.5263 25 6 1.8055 -3.1973 -6.3231 26 8 2.0125 -4.2947 -5.8442 27 8 1.9330 -3.0070 -7.6499 28 6 2.3200 -4.1574 -8.4467 29 6 1.2740 -5.2626 -8.2886 30 6 2.4127 -3.7503 -9.9186 31 6 3.6808 -4.6715 -7.9726 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.7094 1.1619 3.4844 36 1 1.1489 0.5385 -2.5435 37 1 1.7500 0.9748 -4.6032 38 1 3.1258 0.0902 -5.3375 39 1 -0.4020 0.4932 -4.9086 40 1 -1.0330 -0.8580 -5.9018 41 1 -0.9489 -2.2882 -4.0124 42 1 -0.3135 -0.9310 -3.0279 43 1 0.3045 -4.8962 -8.6263 44 1 1.5644 -6.1260 -8.8871 45 1 1.2075 -5.5527 -7.2400 46 1 3.1578 -2.9627 -10.0315 47 1 2.7037 -4.6139 -10.5168 48 1 1.4431 -3.3843 -10.2561 49 1 3.6145 -4.9616 -6.9240 50 1 3.9717 -5.5349 -8.5711 51 1 4.4261 -3.8842 -8.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890282450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:09 Heat of formation + Delta-G solvation = -116.477868 kcal Electronic energy + Delta-G solvation = -31118.846511 eV Core-core repulsion = 27018.144872 eV Total energy + Delta-G solvation = -4100.701639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27202 -41.23619 -39.91265 -37.77411 -35.75628 -35.40249 -34.87190 -32.58847 -31.94461 -30.98123 -29.71800 -28.39495 -28.29170 -27.16478 -25.23495 -24.28653 -23.07577 -22.29756 -21.21579 -20.57805 -20.25101 -19.10956 -18.30164 -17.80015 -17.53914 -17.42222 -16.98186 -16.51674 -16.25737 -16.14959 -15.52979 -15.36113 -14.97822 -14.79513 -14.46284 -14.32839 -14.05938 -13.72290 -13.46338 -13.40507 -13.32170 -13.17000 -13.12119 -12.96391 -12.88073 -12.87230 -12.71299 -12.62354 -12.54823 -12.50966 -12.29227 -12.17271 -12.03908 -11.98806 -11.93646 -11.41494 -11.23610 -11.12761 -10.99914 -10.58870 -10.36049 -10.25078 -9.71094 -8.14414 -6.23236 0.89866 1.38004 1.40852 1.53798 1.70683 1.95597 2.33824 2.51251 2.81484 3.15320 3.41946 3.51517 3.62884 3.74560 3.78999 3.91009 3.93517 4.04911 4.17376 4.19742 4.29990 4.39842 4.47593 4.57652 4.58782 4.62045 4.74075 4.80046 4.80850 4.84215 4.87444 4.90767 4.98458 4.99717 5.03383 5.06671 5.10787 5.12648 5.18281 5.25977 5.31630 5.34907 5.45279 5.54841 5.63777 5.78877 5.98985 6.26121 6.52278 6.77295 6.89111 7.22836 7.42365 7.58555 8.91137 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.002577 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.493923 B =10863.818241 C =11469.005937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.026 3.974 3 H 0.046 0.954 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.907 5.907 8 Si 0.949 3.051 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.522 3.478 13 O -0.589 6.589 14 N -0.705 5.705 15 C 0.134 3.866 16 H 0.057 0.943 17 C -0.125 4.125 18 C 0.131 3.869 19 H 0.148 0.852 20 C -0.118 4.118 21 C -0.132 4.132 22 C 0.132 3.868 23 H 0.076 0.924 24 N -0.618 5.618 25 C 0.670 3.330 26 O -0.605 6.605 27 O -0.359 6.359 28 C 0.124 3.876 29 C -0.179 4.179 30 C -0.131 4.131 31 C -0.181 4.181 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.416 0.584 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.051 0.949 50 H 0.092 0.908 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 0.584 -27.825 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.005 3.995 3 H 0.064 0.936 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.775 3.225 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.312 3.688 13 O -0.468 6.468 14 N -0.360 5.360 15 C 0.027 3.973 16 H 0.075 0.925 17 C -0.164 4.164 18 C 0.030 3.970 19 H 0.166 0.834 20 C -0.156 4.156 21 C -0.170 4.170 22 C 0.028 3.972 23 H 0.094 0.906 24 N -0.359 5.359 25 C 0.426 3.574 26 O -0.497 6.497 27 O -0.274 6.274 28 C 0.088 3.912 29 C -0.236 4.236 30 C -0.188 4.188 31 C -0.238 4.238 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.255 0.745 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.120 0.880 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.111 0.889 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.796 -0.487 -27.656 27.801 hybrid contribution 0.438 -0.855 1.547 1.821 sum -2.357 -1.341 -26.108 26.249 Atomic orbital electron populations 1.21559 0.94668 0.99385 1.02070 1.18802 0.95552 0.95961 0.89199 0.93632 1.21316 1.31360 1.12542 0.91378 0.93882 1.25507 0.95297 0.95766 1.01138 1.69936 1.37205 1.23397 1.24153 0.85643 0.78357 0.78594 0.79873 1.20934 1.19917 1.19967 1.21633 0.77921 0.83539 0.85733 1.90545 1.39882 1.28857 1.87499 1.45971 1.54208 1.32057 1.03773 1.22026 0.96372 0.93002 0.85895 0.92464 1.23276 1.01481 0.98937 0.92689 1.24043 0.95260 0.76778 1.00948 0.83442 1.23605 0.95571 1.00990 0.95425 1.23552 0.93301 0.99606 1.00570 1.23830 0.97734 0.97993 0.77594 0.90592 1.49260 1.69395 1.09856 1.07421 1.17568 0.76196 0.82598 0.81064 1.90904 1.57582 1.24947 1.76261 1.86292 1.82396 1.42348 1.16357 1.22442 0.94514 0.83164 0.91122 1.22464 0.98743 0.99024 1.03415 1.21861 1.03877 1.03772 0.89309 1.22479 0.95838 1.02606 1.02908 0.91223 0.92115 0.96089 0.92631 0.74531 0.85891 0.89427 0.86600 0.89980 0.91836 0.89081 0.91638 0.88989 0.92848 0.91005 0.87971 0.90795 0.92950 0.88926 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.87 71.98 0.64 -4.43 16 2 C 0.03 1.26 2.64 -12.29 -0.03 1.23 16 3 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.53 -30.41 8.37 25.60 0.21 -30.19 16 5 H 0.04 2.71 6.75 -2.91 -0.02 2.69 16 6 C 0.02 1.24 5.30 84.66 0.45 1.68 16 7 N -0.91 -50.04 11.32 21.45 0.24 -49.80 16 8 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 9 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.52 23.00 7.14 87.65 0.63 23.63 16 13 O -0.59 -31.66 15.19 -3.03 -0.05 -31.71 16 14 N -0.71 -21.37 3.49 -434.83 -1.52 -22.89 16 15 C 0.13 3.77 3.08 46.63 0.14 3.91 16 16 H 0.06 2.04 7.71 -2.39 -0.02 2.02 16 17 C -0.13 -2.09 6.20 32.21 0.20 -1.89 16 18 C 0.13 2.08 5.28 46.22 0.24 2.33 16 19 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 20 C -0.12 -1.63 6.63 33.55 0.22 -1.41 16 21 C -0.13 -2.99 6.52 33.55 0.22 -2.77 16 22 C 0.13 3.94 5.12 46.25 0.24 4.17 16 23 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 24 N -0.62 -16.11 2.92 -864.66 -2.53 -18.64 16 25 C 0.67 20.11 8.13 129.79 1.06 21.16 16 26 O -0.61 -22.50 12.48 19.82 0.25 -22.26 16 27 O -0.36 -8.64 9.76 -55.49 -0.54 -9.18 16 28 C 0.12 2.40 1.13 -10.80 -0.01 2.39 16 29 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 30 C -0.13 -1.47 8.85 71.98 0.64 -0.84 16 31 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 32 H 0.07 3.35 6.07 -2.39 -0.01 3.33 16 33 H 0.06 1.95 7.56 -2.38 -0.02 1.93 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.42 9.46 7.42 -92.71 -0.69 8.77 16 37 H 0.12 1.31 7.32 -2.39 -0.02 1.30 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 0.95 7.81 -2.39 -0.02 0.93 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 2.12 6.43 -2.39 -0.02 2.11 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.46 5.88 -2.39 -0.01 1.45 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.05 1.50 5.88 -2.39 -0.01 1.49 16 50 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -77.61 397.16 4.17 -73.45 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.24 Total: 20.87 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.05 Total: 12.87 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -3.80 Total: -91.32 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -0.34 Total: -63.14 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.61 4.17 -73.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890282450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.032 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds