Wall clock time and date at job start Tue Mar 31 2020 21:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47657 * 2 1 4 4 C 1.50698 * 109.47475 * 240.00061 * 2 1 3 5 5 H 1.07997 * 120.00162 * 275.48393 * 4 2 1 6 6 C 1.37882 * 120.00233 * 95.48132 * 4 2 1 7 7 N 1.31509 * 120.00238 * 174.81666 * 6 4 2 8 8 Si 1.86806 * 119.99720 * 354.81172 * 6 4 2 9 9 H 1.48503 * 109.46552 * 94.68941 * 8 6 4 10 10 H 1.48497 * 109.47181 * 214.68897 * 8 6 4 11 11 H 1.48500 * 109.47231 * 334.69352 * 8 6 4 12 12 C 1.50695 * 109.47200 * 120.00181 * 2 1 3 13 13 O 1.21280 * 120.00460 * 120.00118 * 12 2 1 14 14 N 1.34779 * 120.00192 * 300.00146 * 12 2 1 15 15 C 1.46494 * 120.00270 * 180.02562 * 14 12 2 16 16 H 1.09004 * 110.68574 * 318.54450 * 15 14 12 17 17 C 1.54856 * 110.62772 * 195.55860 * 15 14 12 18 18 C 1.55844 * 103.44909 * 241.51243 * 17 15 14 19 19 H 1.08999 * 115.56135 * 201.19200 * 18 17 15 20 20 C 1.55833 * 105.06484 * 72.57400 * 18 17 15 21 21 C 1.58512 * 102.75736 * 287.92844 * 20 18 17 22 22 C 1.55840 * 110.63072 * 81.53505 * 15 14 12 23 23 H 1.09000 * 115.56221 * 277.30633 * 22 15 14 24 24 N 1.50236 * 101.05420 * 151.42855 * 22 15 14 25 25 C 1.34774 * 130.84160 * 125.32178 * 24 22 15 26 26 O 1.21508 * 119.99663 * 359.97438 * 25 24 22 27 27 O 1.34637 * 120.00115 * 180.02562 * 25 24 22 28 28 C 1.45192 * 117.00103 * 179.97438 * 27 25 24 29 29 C 1.53002 * 109.47444 * 59.99509 * 28 27 25 30 30 C 1.52995 * 109.47453 * 179.97438 * 28 27 25 31 31 C 1.53003 * 109.47250 * 299.99610 * 28 27 25 32 32 H 1.08997 * 109.46870 * 185.02982 * 1 2 3 33 33 H 1.08992 * 109.47283 * 305.03114 * 1 2 3 34 34 H 1.09001 * 109.46815 * 65.03445 * 1 2 3 35 35 H 0.96998 * 119.99786 * 179.97438 * 7 6 4 36 36 H 0.97003 * 119.99397 * 359.97438 * 14 12 2 37 37 H 1.09007 * 110.62455 * 0.02562 * 17 15 14 38 38 H 1.09000 * 110.62650 * 123.01234 * 17 15 14 39 39 H 1.09000 * 110.63282 * 46.66669 * 20 18 17 40 40 H 1.09004 * 110.62878 * 169.52906 * 20 18 17 41 41 H 1.09002 * 111.39131 * 241.54289 * 21 20 18 42 42 H 1.09002 * 110.52316 * 118.05872 * 21 20 18 43 43 H 1.09006 * 109.46586 * 60.00039 * 29 28 27 44 44 H 1.09005 * 109.47574 * 179.97438 * 29 28 27 45 45 H 1.08998 * 109.47234 * 300.00289 * 29 28 27 46 46 H 1.09001 * 109.47100 * 59.99697 * 30 28 27 47 47 H 1.09000 * 109.47897 * 180.02562 * 30 28 27 48 48 H 1.09001 * 109.47514 * 300.00107 * 30 28 27 49 49 H 1.08998 * 109.46848 * 60.00065 * 31 28 27 50 50 H 1.09000 * 109.47600 * 180.02562 * 31 28 27 51 51 H 1.08996 * 109.47348 * 300.00153 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1281 -1.7861 -1.2317 6 6 2.3697 0.0130 -2.3547 7 7 2.9036 -0.5944 -3.3918 8 14 2.0684 1.8559 -2.4048 9 1 3.3050 2.5708 -1.9987 10 1 1.6938 2.2589 -3.7841 11 1 0.9668 2.2029 -1.4713 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9403 3.6507 16 1 2.1333 -2.0212 3.5239 17 6 1.4017 -0.4914 4.9023 18 6 2.4922 0.1504 5.8121 19 1 2.2445 0.2110 6.8718 20 6 2.8470 1.5038 5.1259 21 6 3.6596 1.0443 3.8448 22 6 3.6574 -0.5088 3.9748 23 1 4.4360 -1.0284 3.4164 24 7 3.6878 -0.6911 5.4657 25 6 4.5210 -1.4033 6.2498 26 8 5.4307 -2.0367 5.7520 27 8 4.3449 -1.4139 7.5846 28 6 5.2796 -2.2032 8.3666 29 6 6.7001 -1.6802 8.1435 30 6 4.9234 -2.0931 9.8504 31 6 5.2008 -3.6674 7.9300 32 1 -0.3633 -1.0237 0.0901 33 1 -0.3633 0.5899 0.8414 34 1 -0.3633 0.4338 -0.9317 35 1 3.1406 -0.0855 -4.1828 36 1 1.1493 0.5388 2.5435 37 1 0.6441 0.2446 4.6329 38 1 0.9459 -1.3495 5.3961 39 1 1.9412 2.0414 4.8455 40 1 3.4677 2.1153 5.7809 41 1 4.6791 1.4296 3.8614 42 1 3.1456 1.3541 2.9349 43 1 6.7562 -0.6370 8.4546 44 1 7.4018 -2.2724 8.7309 45 1 6.9542 -1.7583 7.0864 46 1 3.9114 -2.4654 10.0097 47 1 5.6254 -2.6852 10.4376 48 1 4.9798 -1.0499 10.1613 49 1 5.4549 -3.7455 6.8729 50 1 5.9022 -4.2601 8.5173 51 1 4.1889 -4.0400 8.0889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890282451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:12 Heat of formation + Delta-G solvation = -93.135961 kcal Electronic energy + Delta-G solvation = -31170.153924 eV Core-core repulsion = 27070.464465 eV Total energy + Delta-G solvation = -4099.689458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24215 -40.17202 -38.42235 -36.72312 -34.31610 -33.68883 -33.64818 -31.37228 -30.99472 -30.10394 -28.67154 -27.64837 -27.57024 -25.24526 -24.06454 -22.98782 -21.85313 -21.41009 -19.68665 -19.46645 -19.17967 -18.08192 -17.04099 -16.61059 -16.41249 -16.08263 -15.77525 -15.37255 -15.22809 -14.54013 -14.28265 -14.10150 -13.94637 -13.57013 -13.25135 -12.94028 -12.84982 -12.72124 -12.49553 -12.48280 -12.38440 -12.27254 -12.17486 -12.10748 -12.00493 -11.81278 -11.61415 -11.46262 -11.40628 -11.20621 -11.16895 -10.95512 -10.70797 -10.52172 -10.41018 -10.23932 -10.07206 -9.80292 -9.20925 -9.15464 -8.69459 -8.56175 -8.44085 -6.06648 -4.05865 1.88791 2.81121 3.22568 3.29708 3.33168 3.53502 3.59769 3.82885 4.31492 4.37494 4.43739 4.48406 4.50042 4.55689 4.68076 4.81821 4.95429 5.03168 5.09615 5.21126 5.22177 5.24305 5.30025 5.34319 5.41292 5.44925 5.51646 5.60217 5.64797 5.70497 5.74348 5.76211 5.81532 5.93970 6.05128 6.09584 6.10199 6.13250 6.13929 6.19557 6.37756 6.38476 6.50267 6.80651 6.95099 7.15667 7.54451 7.54746 8.10957 8.30323 8.53408 9.09529 9.13304 9.52643 11.06659 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.002717 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.048517 B =10304.224427 C =10632.488694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.003 4.003 3 H 0.054 0.946 4 C -0.496 4.496 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.893 5.893 8 Si 0.869 3.131 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.261 1.261 12 C 0.518 3.482 13 O -0.522 6.522 14 N -0.737 5.737 15 C 0.136 3.864 16 H 0.092 0.908 17 C -0.138 4.138 18 C 0.126 3.874 19 H 0.119 0.881 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.143 3.857 23 H 0.125 0.875 24 N -0.616 5.616 25 C 0.676 3.324 26 O -0.566 6.566 27 O -0.365 6.365 28 C 0.136 3.864 29 C -0.183 4.183 30 C -0.139 4.139 31 C -0.184 4.184 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.056 0.944 35 H 0.264 0.736 36 H 0.395 0.605 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 4.428 26.981 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.025 4.025 3 H 0.072 0.928 4 C -0.534 4.534 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.531 5.531 8 Si 0.696 3.304 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.185 1.185 12 C 0.307 3.693 13 O -0.394 6.394 14 N -0.393 5.393 15 C 0.029 3.971 16 H 0.110 0.890 17 C -0.176 4.176 18 C 0.023 3.977 19 H 0.137 0.863 20 C -0.169 4.169 21 C -0.173 4.173 22 C 0.041 3.959 23 H 0.143 0.857 24 N -0.358 5.358 25 C 0.432 3.568 26 O -0.455 6.455 27 O -0.280 6.280 28 C 0.099 3.901 29 C -0.241 4.241 30 C -0.196 4.196 31 C -0.241 4.241 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.536 3.372 26.684 26.901 hybrid contribution -0.244 1.306 -0.038 1.330 sum -0.780 4.679 26.646 27.065 Atomic orbital electron populations 1.21975 0.96929 1.00489 0.99844 1.19315 0.93857 0.96947 0.92337 0.92773 1.20729 1.42756 0.96127 0.93764 0.89715 1.25035 0.94367 0.97953 0.95772 1.69902 1.41545 1.36217 1.05420 0.86982 0.79097 0.86514 0.77766 1.20361 1.21206 1.18523 1.21817 0.79011 0.84601 0.83892 1.90615 1.36451 1.26022 1.86362 1.46454 1.55222 1.32493 1.05128 1.22002 0.91895 0.98365 0.84846 0.89020 1.23250 0.97217 1.01645 0.95520 1.23687 0.84386 0.90184 0.99446 0.86270 1.23564 1.00626 0.95773 0.96966 1.23577 1.01041 0.94177 0.98456 1.24039 0.98832 0.96351 0.76702 0.85733 1.49154 1.29712 1.49186 1.07702 1.17326 0.80674 0.78437 0.80338 1.90923 1.33328 1.46462 1.74796 1.86279 1.56245 1.68095 1.17370 1.22041 0.87894 0.90315 0.89840 1.22519 0.95022 1.01177 1.05346 1.21845 1.02763 1.03113 0.91895 1.22521 1.02415 0.94189 1.05000 0.93257 0.95511 0.92467 0.92588 0.76997 0.89310 0.90202 0.89936 0.91166 0.91045 0.88936 0.92307 0.91220 0.89290 0.91529 0.90204 0.91590 0.89232 0.91222 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.75 37.15 0.32 -2.19 16 2 C 0.00 -0.06 2.18 -92.93 -0.20 -0.26 16 3 H 0.05 1.15 5.58 -51.93 -0.29 0.86 16 4 C -0.50 -13.93 8.35 -34.44 -0.29 -14.22 16 5 H 0.08 2.73 7.62 -52.49 -0.40 2.33 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.89 -27.40 13.96 55.43 0.77 -26.62 16 8 Si 0.87 20.32 26.58 -169.99 -4.52 15.80 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -5.50 6.22 56.52 0.35 -5.15 16 12 C 0.52 10.72 7.10 -10.99 -0.08 10.64 16 13 O -0.52 -13.21 15.58 5.56 0.09 -13.12 16 14 N -0.74 -10.80 3.44 -51.40 -0.18 -10.98 16 15 C 0.14 1.85 3.01 -65.44 -0.20 1.65 16 16 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 17 C -0.14 -1.28 6.20 -24.23 -0.15 -1.43 16 18 C 0.13 1.18 5.28 -62.80 -0.33 0.84 16 19 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 20 C -0.13 -1.13 6.63 -22.17 -0.15 -1.28 16 21 C -0.13 -1.58 6.52 -22.16 -0.14 -1.73 16 22 C 0.14 2.05 5.07 -62.80 -0.32 1.73 16 23 H 0.12 2.19 8.14 -51.93 -0.42 1.76 16 24 N -0.62 -8.04 2.92 -151.89 -0.44 -8.49 16 25 C 0.68 9.92 8.13 54.05 0.44 10.36 16 26 O -0.57 -9.84 12.48 -19.28 -0.24 -10.08 16 27 O -0.36 -4.54 9.76 -40.31 -0.39 -4.93 16 28 C 0.14 1.40 1.13 -90.62 -0.10 1.29 16 29 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 30 C -0.14 -0.98 8.85 37.16 0.33 -0.66 16 31 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.39 7.71 -51.93 -0.40 -0.01 16 34 H 0.06 1.11 7.35 -51.93 -0.38 0.73 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.40 4.56 7.62 -40.82 -0.31 4.25 16 37 H 0.09 0.64 7.28 -51.93 -0.38 0.26 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.55 7.81 -51.93 -0.41 0.15 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.13 6.52 -51.93 -0.34 0.79 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -34.86 395.83 -7.89 -42.75 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.60 Total: 6.22 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.34 Total: 3.48 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.15 Total: -46.09 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.55 Total: -28.13 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.52 Total: 15.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.86 -7.89 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890282451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.382 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds