Wall clock time and date at job start Tue Mar 31 2020 21:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47657 * 2 1 4 4 C 1.50698 * 109.47475 * 240.00061 * 2 1 3 5 5 H 1.07997 * 120.00162 * 275.48393 * 4 2 1 6 6 C 1.37882 * 120.00233 * 95.48132 * 4 2 1 7 7 N 1.31509 * 120.00238 * 174.81666 * 6 4 2 8 8 Si 1.86806 * 119.99720 * 354.81172 * 6 4 2 9 9 H 1.48503 * 109.46552 * 94.68941 * 8 6 4 10 10 H 1.48497 * 109.47181 * 214.68897 * 8 6 4 11 11 H 1.48500 * 109.47231 * 334.69352 * 8 6 4 12 12 C 1.50695 * 109.47200 * 120.00181 * 2 1 3 13 13 O 1.21280 * 120.00460 * 120.00118 * 12 2 1 14 14 N 1.34779 * 120.00192 * 300.00146 * 12 2 1 15 15 C 1.46494 * 120.00270 * 180.02562 * 14 12 2 16 16 H 1.09004 * 110.68574 * 318.54450 * 15 14 12 17 17 C 1.54856 * 110.62772 * 195.55860 * 15 14 12 18 18 C 1.55844 * 103.44909 * 241.51243 * 17 15 14 19 19 H 1.08999 * 115.56135 * 201.19200 * 18 17 15 20 20 C 1.55833 * 105.06484 * 72.57400 * 18 17 15 21 21 C 1.58512 * 102.75736 * 287.92844 * 20 18 17 22 22 C 1.55840 * 110.63072 * 81.53505 * 15 14 12 23 23 H 1.09000 * 115.56221 * 277.30633 * 22 15 14 24 24 N 1.50236 * 101.05420 * 151.42855 * 22 15 14 25 25 C 1.34774 * 130.84160 * 125.32178 * 24 22 15 26 26 O 1.21508 * 119.99663 * 359.97438 * 25 24 22 27 27 O 1.34637 * 120.00115 * 180.02562 * 25 24 22 28 28 C 1.45192 * 117.00103 * 179.97438 * 27 25 24 29 29 C 1.53002 * 109.47444 * 59.99509 * 28 27 25 30 30 C 1.52995 * 109.47453 * 179.97438 * 28 27 25 31 31 C 1.53003 * 109.47250 * 299.99610 * 28 27 25 32 32 H 1.08997 * 109.46870 * 185.02982 * 1 2 3 33 33 H 1.08992 * 109.47283 * 305.03114 * 1 2 3 34 34 H 1.09001 * 109.46815 * 65.03445 * 1 2 3 35 35 H 0.96998 * 119.99786 * 179.97438 * 7 6 4 36 36 H 0.97003 * 119.99397 * 359.97438 * 14 12 2 37 37 H 1.09007 * 110.62455 * 0.02562 * 17 15 14 38 38 H 1.09000 * 110.62650 * 123.01234 * 17 15 14 39 39 H 1.09000 * 110.63282 * 46.66669 * 20 18 17 40 40 H 1.09004 * 110.62878 * 169.52906 * 20 18 17 41 41 H 1.09002 * 111.39131 * 241.54289 * 21 20 18 42 42 H 1.09002 * 110.52316 * 118.05872 * 21 20 18 43 43 H 1.09006 * 109.46586 * 60.00039 * 29 28 27 44 44 H 1.09005 * 109.47574 * 179.97438 * 29 28 27 45 45 H 1.08998 * 109.47234 * 300.00289 * 29 28 27 46 46 H 1.09001 * 109.47100 * 59.99697 * 30 28 27 47 47 H 1.09000 * 109.47897 * 180.02562 * 30 28 27 48 48 H 1.09001 * 109.47514 * 300.00107 * 30 28 27 49 49 H 1.08998 * 109.46848 * 60.00065 * 31 28 27 50 50 H 1.09000 * 109.47600 * 180.02562 * 31 28 27 51 51 H 1.08996 * 109.47348 * 300.00153 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1281 -1.7861 -1.2317 6 6 2.3697 0.0130 -2.3547 7 7 2.9036 -0.5944 -3.3918 8 14 2.0684 1.8559 -2.4048 9 1 3.3050 2.5708 -1.9987 10 1 1.6938 2.2589 -3.7841 11 1 0.9668 2.2029 -1.4713 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9403 3.6507 16 1 2.1333 -2.0212 3.5239 17 6 1.4017 -0.4914 4.9023 18 6 2.4922 0.1504 5.8121 19 1 2.2445 0.2110 6.8718 20 6 2.8470 1.5038 5.1259 21 6 3.6596 1.0443 3.8448 22 6 3.6574 -0.5088 3.9748 23 1 4.4360 -1.0284 3.4164 24 7 3.6878 -0.6911 5.4657 25 6 4.5210 -1.4033 6.2498 26 8 5.4307 -2.0367 5.7520 27 8 4.3449 -1.4139 7.5846 28 6 5.2796 -2.2032 8.3666 29 6 6.7001 -1.6802 8.1435 30 6 4.9234 -2.0931 9.8504 31 6 5.2008 -3.6674 7.9300 32 1 -0.3633 -1.0237 0.0901 33 1 -0.3633 0.5899 0.8414 34 1 -0.3633 0.4338 -0.9317 35 1 3.1406 -0.0855 -4.1828 36 1 1.1493 0.5388 2.5435 37 1 0.6441 0.2446 4.6329 38 1 0.9459 -1.3495 5.3961 39 1 1.9412 2.0414 4.8455 40 1 3.4677 2.1153 5.7809 41 1 4.6791 1.4296 3.8614 42 1 3.1456 1.3541 2.9349 43 1 6.7562 -0.6370 8.4546 44 1 7.4018 -2.2724 8.7309 45 1 6.9542 -1.7583 7.0864 46 1 3.9114 -2.4654 10.0097 47 1 5.6254 -2.6852 10.4376 48 1 4.9798 -1.0499 10.1613 49 1 5.4549 -3.7455 6.8729 50 1 5.9022 -4.2601 8.5173 51 1 4.1889 -4.0400 8.0889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890282451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:11 Heat of formation + Delta-G solvation = -117.949648 kcal Electronic energy + Delta-G solvation = -31171.229926 eV Core-core repulsion = 27070.464465 eV Total energy + Delta-G solvation = -4100.765461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28520 -41.25437 -39.94602 -37.78700 -35.60990 -35.42285 -34.89197 -33.27949 -31.97673 -31.02413 -29.80204 -28.40665 -28.29914 -27.16646 -25.25771 -24.28947 -23.00593 -22.29248 -21.11949 -20.59538 -20.25613 -19.12013 -19.06095 -17.63996 -17.54180 -17.44556 -17.10449 -16.59646 -16.21693 -16.07492 -15.54946 -15.36682 -14.91623 -14.76691 -14.59211 -14.40171 -14.09671 -13.85185 -13.68828 -13.41522 -13.32835 -13.24137 -13.12759 -13.06913 -12.96261 -12.89123 -12.88108 -12.64130 -12.52964 -12.48685 -12.30514 -12.10458 -12.00226 -11.94262 -11.68131 -11.42562 -11.25216 -11.18910 -11.13909 -10.72204 -10.44479 -10.30418 -9.72883 -8.24537 -6.31425 0.88924 1.39194 1.42162 1.54350 1.69898 1.93313 2.34876 2.39595 2.80230 3.13710 3.41595 3.50412 3.62596 3.73628 3.77934 3.90148 3.92568 4.04619 4.17713 4.19930 4.28104 4.31910 4.44345 4.46780 4.57046 4.57623 4.61535 4.72927 4.78886 4.79749 4.83464 4.86709 4.90209 4.91630 5.00596 5.03303 5.07555 5.11989 5.16949 5.21667 5.24890 5.30738 5.34041 5.44436 5.56717 5.63860 5.64576 6.28083 6.51618 6.70709 6.90130 7.22122 7.30347 7.58225 8.94024 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.002717 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.048517 B =10304.224427 C =10632.488694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.006 4.006 3 H 0.077 0.923 4 C -0.507 4.507 5 H 0.015 0.985 6 C -0.002 4.002 7 N -0.957 5.957 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.208 1.208 12 C 0.519 3.481 13 O -0.585 6.585 14 N -0.704 5.704 15 C 0.136 3.864 16 H 0.054 0.946 17 C -0.122 4.122 18 C 0.129 3.871 19 H 0.148 0.852 20 C -0.116 4.116 21 C -0.133 4.133 22 C 0.129 3.871 23 H 0.070 0.930 24 N -0.619 5.619 25 C 0.669 3.331 26 O -0.607 6.607 27 O -0.358 6.358 28 C 0.124 3.876 29 C -0.180 4.180 30 C -0.131 4.131 31 C -0.181 4.181 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.265 0.735 36 H 0.419 0.581 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 8.793 31.222 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 H 0.095 0.905 4 C -0.546 4.546 5 H 0.033 0.967 6 C -0.198 4.198 7 N -0.597 5.597 8 Si 0.771 3.229 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.130 1.130 12 C 0.308 3.692 13 O -0.463 6.463 14 N -0.360 5.360 15 C 0.029 3.971 16 H 0.072 0.928 17 C -0.161 4.161 18 C 0.028 3.972 19 H 0.166 0.834 20 C -0.154 4.154 21 C -0.171 4.171 22 C 0.025 3.975 23 H 0.089 0.911 24 N -0.360 5.360 25 C 0.425 3.575 26 O -0.499 6.499 27 O -0.273 6.273 28 C 0.088 3.912 29 C -0.237 4.237 30 C -0.188 4.188 31 C -0.239 4.239 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.092 0.908 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.684 7.789 31.017 32.192 hybrid contribution 0.815 -0.250 -1.325 1.575 sum -2.869 7.539 29.693 30.769 Atomic orbital electron populations 1.21862 0.93474 1.01013 1.02271 1.19308 0.96407 0.97019 0.90056 0.90537 1.20923 1.43096 0.93518 0.97025 0.96694 1.26212 0.93734 1.05021 0.94796 1.70121 1.43823 1.39136 1.06632 0.85731 0.80726 0.77669 0.78809 1.19752 1.21467 1.13019 1.21588 0.78311 0.83747 0.85572 1.90613 1.39413 1.28909 1.87409 1.45966 1.53986 1.32506 1.03540 1.21995 0.92617 0.96379 0.86155 0.92818 1.23274 0.97280 1.03071 0.92439 1.24072 0.82291 0.89683 1.01139 0.83417 1.23610 1.01680 0.95423 0.94698 1.23562 1.01429 0.91480 1.00656 1.23826 0.97756 0.98281 0.77616 0.91122 1.49272 1.30625 1.49190 1.06938 1.17591 0.80525 0.78250 0.81153 1.90912 1.35178 1.48110 1.75662 1.86285 1.56751 1.68343 1.15911 1.22440 0.87665 0.89626 0.91488 1.22472 0.95792 1.02142 1.03298 1.21857 1.03727 1.04207 0.88983 1.22482 1.03197 0.95260 1.02923 0.94552 0.89602 0.92713 0.92588 0.74141 0.85248 0.89356 0.86087 0.90157 0.92167 0.88913 0.91594 0.88991 0.92970 0.90914 0.87997 0.90761 0.93071 0.88939 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.75 71.98 0.63 -3.76 16 2 C -0.01 -0.26 2.18 -12.29 -0.03 -0.29 16 3 H 0.08 2.97 5.58 -2.39 -0.01 2.96 16 4 C -0.51 -29.98 8.35 25.60 0.21 -29.77 16 5 H 0.01 1.04 7.62 -2.91 -0.02 1.02 16 6 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 7 N -0.96 -62.18 13.96 21.45 0.30 -61.88 16 8 Si 0.95 41.25 26.58 68.60 1.82 43.07 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.21 -7.28 6.22 99.48 0.62 -6.66 16 12 C 0.52 21.79 7.10 87.66 0.62 22.42 16 13 O -0.59 -32.09 15.58 -3.03 -0.05 -32.14 16 14 N -0.70 -19.22 3.44 -434.92 -1.50 -20.72 16 15 C 0.14 3.61 3.01 46.61 0.14 3.75 16 16 H 0.05 1.86 7.84 -2.39 -0.02 1.84 16 17 C -0.12 -1.77 6.20 32.21 0.20 -1.57 16 18 C 0.13 1.89 5.28 46.22 0.24 2.13 16 19 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 20 C -0.12 -1.43 6.63 33.55 0.22 -1.21 16 21 C -0.13 -2.92 6.52 33.55 0.22 -2.70 16 22 C 0.13 3.84 5.07 46.23 0.23 4.07 16 23 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 24 N -0.62 -16.01 2.92 -864.88 -2.53 -18.53 16 25 C 0.67 20.24 8.13 129.79 1.06 21.29 16 26 O -0.61 -23.07 12.48 19.82 0.25 -22.82 16 27 O -0.36 -8.59 9.76 -55.46 -0.54 -9.13 16 28 C 0.12 2.43 1.13 -10.79 -0.01 2.41 16 29 C -0.18 -3.63 8.37 71.98 0.60 -3.03 16 30 C -0.13 -1.46 8.85 71.98 0.64 -0.82 16 31 C -0.18 -3.82 8.37 71.98 0.60 -3.22 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.94 7.71 -2.39 -0.02 1.92 16 34 H 0.05 1.91 7.35 -2.39 -0.02 1.90 16 35 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 36 H 0.42 7.40 7.62 -92.71 -0.71 6.70 16 37 H 0.13 0.91 7.28 -2.38 -0.02 0.90 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 0.68 7.81 -2.39 -0.02 0.66 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 2.01 6.52 -2.39 -0.02 1.99 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.05 1.47 5.88 -2.39 -0.01 1.45 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.05 1.50 5.88 -2.39 -0.01 1.48 16 50 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -90.98 395.83 3.94 -87.04 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.13 Total: 25.04 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.05 Total: 10.07 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -3.72 Total: -101.13 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -0.34 Total: -64.09 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.82 Total: 43.07 kcal Total: -90.98 3.94 -87.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890282451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -90.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds