Wall clock time and date at job start Tue Mar 31 2020 21:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47082 * 2 1 4 4 C 1.50701 * 109.47263 * 239.99698 * 2 1 3 5 5 H 1.08000 * 119.99913 * 240.00670 * 4 2 1 6 6 C 1.37877 * 120.00023 * 59.99807 * 4 2 1 7 7 N 1.31518 * 119.99826 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00170 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47377 * 90.00461 * 8 6 4 10 10 H 1.48503 * 109.47377 * 210.00716 * 8 6 4 11 11 H 1.48500 * 109.47264 * 330.00639 * 8 6 4 12 12 N 1.46499 * 109.46683 * 119.99844 * 2 1 3 13 13 C 1.34779 * 120.00108 * 274.99777 * 12 2 1 14 14 O 1.21278 * 119.99564 * 354.76315 * 13 12 2 15 15 C 1.50703 * 120.00015 * 175.03873 * 13 12 2 16 16 C 1.55849 * 115.56006 * 286.00603 * 15 13 12 17 17 C 1.56683 * 102.59544 * 159.08580 * 16 15 13 18 18 C 1.55846 * 103.60437 * 0.33701 * 17 16 15 19 19 C 1.55845 * 105.06515 * 71.58863 * 18 17 16 20 20 C 1.54849 * 103.44923 * 288.17970 * 19 18 17 21 21 N 1.50240 * 115.85691 * 44.86610 * 15 13 12 22 22 C 1.34773 * 130.84347 * 0.36561 * 21 15 13 23 23 O 1.21512 * 119.99774 * 6.41845 * 22 21 15 24 24 O 1.34634 * 120.00412 * 186.42883 * 22 21 15 25 25 C 1.45201 * 116.99940 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.47403 * 59.99786 * 25 24 22 27 27 C 1.53008 * 109.46707 * 179.97438 * 25 24 22 28 28 C 1.53000 * 109.47094 * 299.99009 * 25 24 22 29 29 H 1.09002 * 109.46647 * 60.00045 * 1 2 3 30 30 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47150 * 300.00359 * 1 2 3 32 32 H 0.97001 * 119.99851 * 179.97438 * 7 6 4 33 33 H 0.97009 * 119.99822 * 95.00083 * 12 2 1 34 34 H 1.09000 * 110.62370 * 277.30152 * 16 15 13 35 35 H 1.09001 * 110.62537 * 40.32158 * 16 15 13 36 36 H 1.08995 * 110.74898 * 241.69501 * 17 16 15 37 37 H 1.09004 * 110.48750 * 118.84874 * 17 16 15 38 38 H 1.08998 * 115.55825 * 200.20452 * 18 17 16 39 39 H 1.09003 * 110.62746 * 169.68577 * 19 18 17 40 40 H 1.09009 * 110.62515 * 46.66815 * 19 18 17 41 41 H 1.08997 * 110.62522 * 241.51480 * 20 19 18 42 42 H 1.08998 * 110.63229 * 118.48871 * 20 19 18 43 43 H 1.08994 * 109.47440 * 60.00171 * 26 25 24 44 44 H 1.09002 * 109.47073 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.46872 * 299.99402 * 26 25 24 46 46 H 1.08997 * 109.46982 * 59.99949 * 27 25 24 47 47 H 1.09002 * 109.46770 * 179.97438 * 27 25 24 48 48 H 1.09001 * 109.47032 * 299.99258 * 27 25 24 49 49 H 1.09008 * 109.46652 * 60.00755 * 28 25 24 50 50 H 1.08998 * 109.47047 * 179.97438 * 28 25 24 51 51 H 1.08997 * 109.47713 * 300.00735 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1618 -4.4118 10 1 2.4868 -0.1416 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.9501 1.1780 2.3901 15 6 2.5416 -0.7518 3.6131 16 6 1.4304 -1.6392 4.2507 17 6 2.2550 -2.6399 5.1303 18 6 3.7322 -2.2008 4.8979 19 6 3.8754 -0.8450 5.6530 20 6 3.0643 0.1420 4.7778 21 7 3.6720 -1.7313 3.4720 22 6 4.4146 -2.0719 2.4001 23 8 4.2842 -1.4676 1.3539 24 8 5.3006 -3.0818 2.4882 25 6 6.0655 -3.3937 1.2941 26 6 6.8796 -2.1680 0.8751 27 6 7.0129 -4.5594 1.5854 28 6 5.1104 -3.7825 0.1638 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7095 1.1616 -3.4845 33 1 2.2490 -1.6318 1.1527 34 1 0.7660 -1.0365 4.8700 35 1 0.8671 -2.1631 3.4785 36 1 2.1020 -3.6655 4.7948 37 1 1.9845 -2.5365 6.1812 38 1 4.4879 -2.9509 5.1307 39 1 4.9213 -0.5426 5.7042 40 1 3.4453 -0.9147 6.6522 41 1 3.7081 0.9338 4.3949 42 1 2.2322 0.5618 5.3429 43 1 7.5600 -1.8911 1.6802 44 1 7.4534 -2.4021 -0.0216 45 1 6.2049 -1.3373 0.6676 46 1 6.4332 -5.4327 1.8841 47 1 7.5867 -4.7939 0.6888 48 1 7.6933 -4.2820 2.3905 49 1 4.4357 -2.9518 -0.0436 50 1 5.6845 -4.0162 -0.7328 51 1 4.5304 -4.6557 0.4623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931154961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:14 Heat of formation + Delta-G solvation = -86.641183 kcal Electronic energy + Delta-G solvation = -32890.927849 eV Core-core repulsion = 28791.520025 eV Total energy + Delta-G solvation = -4099.407824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.19341 -39.83070 -38.05331 -36.47782 -34.62053 -33.93230 -32.22147 -31.24271 -30.53305 -30.11279 -28.36089 -27.35400 -27.20433 -25.12081 -24.01142 -22.39262 -22.28973 -21.14572 -19.89660 -19.29295 -18.65596 -18.19003 -16.55833 -16.14071 -16.11706 -15.71808 -15.33411 -14.99648 -14.85183 -14.45969 -14.14866 -13.76134 -13.71871 -13.42598 -13.15486 -12.90744 -12.70955 -12.54555 -12.46399 -12.25140 -12.04354 -11.81029 -11.77262 -11.71969 -11.62687 -11.46532 -11.27604 -11.23578 -11.12397 -10.98772 -10.95683 -10.82734 -10.63115 -10.27318 -10.17071 -10.14841 -10.09081 -9.66483 -8.96975 -8.88738 -8.80112 -8.39704 -7.63274 -5.98064 -4.03354 2.01594 3.03839 3.31758 3.38087 3.41022 3.43295 3.82318 4.04265 4.44722 4.46316 4.58887 4.60148 4.81141 4.84490 4.89504 5.00227 5.06552 5.12739 5.22514 5.27508 5.31148 5.34693 5.49335 5.55869 5.59614 5.74607 5.76766 5.78081 5.79041 5.81683 5.88621 5.97721 6.00435 6.05617 6.07622 6.17899 6.25957 6.49337 6.59573 6.66452 6.90584 7.03669 7.25653 7.61001 7.70486 7.74339 7.85410 8.07924 8.29095 8.58503 8.86265 8.95424 9.26790 9.61840 11.08693 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.005596 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.330970 B = 5002.215129 C = 7161.055056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.513 4.513 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.670 5.670 13 C 0.527 3.473 14 O -0.553 6.553 15 C 0.155 3.845 16 C -0.121 4.121 17 C -0.129 4.129 18 C 0.127 3.873 19 C -0.132 4.132 20 C -0.109 4.109 21 N -0.615 5.615 22 C 0.661 3.339 23 O -0.525 6.525 24 O -0.366 6.366 25 C 0.138 3.862 26 C -0.184 4.184 27 C -0.137 4.137 28 C -0.187 4.187 29 H 0.091 0.909 30 H 0.024 0.976 31 H 0.012 0.988 32 H 0.261 0.739 33 H 0.390 0.610 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.067 0.933 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 -11.312 16.684 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.551 4.551 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.317 5.317 13 C 0.309 3.691 14 O -0.432 6.432 15 C 0.069 3.931 16 C -0.160 4.160 17 C -0.167 4.167 18 C 0.024 3.976 19 C -0.170 4.170 20 C -0.148 4.148 21 N -0.359 5.359 22 C 0.416 3.584 23 O -0.411 6.411 24 O -0.282 6.282 25 C 0.102 3.898 26 C -0.241 4.241 27 C -0.194 4.194 28 C -0.244 4.244 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.086 0.914 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.770 -10.243 15.941 20.479 hybrid contribution 0.543 -0.968 -1.000 1.494 sum 8.313 -11.212 14.941 20.446 Atomic orbital electron populations 1.22103 0.98674 0.98925 1.00807 1.18708 0.90393 0.94155 0.80374 0.93514 1.21199 1.31128 1.12825 0.89993 0.91982 1.24865 0.95145 0.95066 0.98867 1.69906 1.36692 1.22707 1.23489 0.86502 0.79178 0.79250 0.82492 1.20778 1.21250 1.19883 1.46427 1.61962 1.13861 1.09488 1.19191 0.78839 0.87128 0.83942 1.90666 1.53193 1.13871 1.85501 1.23258 0.85874 0.88829 0.95160 1.23250 0.96178 0.97200 0.99353 1.23255 0.93974 0.99372 1.00116 1.23652 0.97655 0.96556 0.79760 1.22998 1.00981 0.94524 0.98499 1.22713 1.00417 0.97161 0.94484 1.49119 1.35251 1.43971 1.07598 1.17579 0.78504 0.79597 0.82690 1.91167 1.68316 1.54524 1.27076 1.86244 1.50680 1.49722 1.41549 1.22028 0.90196 0.95305 0.82292 1.22512 1.00810 0.99355 1.01393 1.21834 0.98344 0.96620 1.02642 1.22562 1.00692 1.03797 0.97356 0.89061 0.95637 0.96891 0.92872 0.77550 0.89363 0.90379 0.90825 0.89993 0.86117 0.91050 0.90022 0.90368 0.89646 0.92667 0.91342 0.88796 0.91710 0.90321 0.91830 0.88282 0.91359 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.45 16 2 C 0.27 7.23 2.60 -69.08 -0.18 7.05 16 3 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 4 C -0.51 -14.46 8.73 -34.44 -0.30 -14.76 16 5 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -26.10 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.67 -15.55 3.52 -54.93 -0.19 -15.75 16 13 C 0.53 11.47 6.53 -10.98 -0.07 11.40 16 14 O -0.55 -14.00 16.17 5.56 0.09 -13.91 16 15 C 0.15 2.45 1.57 -127.84 -0.20 2.25 16 16 C -0.12 -1.47 6.22 -23.22 -0.14 -1.61 16 17 C -0.13 -1.15 6.49 -23.22 -0.15 -1.30 16 18 C 0.13 1.29 5.34 -62.80 -0.34 0.96 16 19 C -0.13 -1.25 6.44 -24.24 -0.16 -1.40 16 20 C -0.11 -1.43 5.66 -24.24 -0.14 -1.57 16 21 N -0.61 -9.07 2.91 -146.20 -0.43 -9.49 16 22 C 0.66 11.24 7.62 54.05 0.41 11.65 16 23 O -0.53 -10.83 8.48 -19.28 -0.16 -11.00 16 24 O -0.37 -5.40 9.77 -40.31 -0.39 -5.80 16 25 C 0.14 1.86 1.13 -90.62 -0.10 1.76 16 26 C -0.18 -2.58 8.37 37.16 0.31 -2.27 16 27 C -0.14 -1.34 8.85 37.16 0.33 -1.02 16 28 C -0.19 -2.75 8.37 37.16 0.31 -2.44 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.39 8.64 6.45 -40.82 -0.26 8.38 16 34 H 0.09 0.94 7.79 -51.93 -0.40 0.53 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.53 7.82 -51.93 -0.41 0.13 16 38 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.56 7.82 -51.92 -0.41 0.15 16 41 H 0.08 1.21 8.13 -51.93 -0.42 0.78 16 42 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.68 5.88 -51.93 -0.31 1.37 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.10 1.85 5.88 -51.92 -0.31 1.55 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -33.52 394.54 -8.36 -41.88 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.66 Total: 9.97 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.17 Total: 6.90 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.01 Total: -50.72 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.47 Total: -30.70 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.52 -8.36 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931154961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.761 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds