Wall clock time and date at job start Tue Mar 31 2020 21:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47082 * 2 1 4 4 C 1.50701 * 109.47263 * 239.99698 * 2 1 3 5 5 H 1.08000 * 119.99913 * 240.00670 * 4 2 1 6 6 C 1.37877 * 120.00023 * 59.99807 * 4 2 1 7 7 N 1.31518 * 119.99826 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00170 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47377 * 90.00461 * 8 6 4 10 10 H 1.48503 * 109.47377 * 210.00716 * 8 6 4 11 11 H 1.48500 * 109.47264 * 330.00639 * 8 6 4 12 12 N 1.46499 * 109.46683 * 119.99844 * 2 1 3 13 13 C 1.34779 * 120.00108 * 274.99777 * 12 2 1 14 14 O 1.21278 * 119.99564 * 354.76315 * 13 12 2 15 15 C 1.50703 * 120.00015 * 175.03873 * 13 12 2 16 16 C 1.55849 * 115.56006 * 286.00603 * 15 13 12 17 17 C 1.56683 * 102.59544 * 159.08580 * 16 15 13 18 18 C 1.55846 * 103.60437 * 0.33701 * 17 16 15 19 19 C 1.55845 * 105.06515 * 71.58863 * 18 17 16 20 20 C 1.54849 * 103.44923 * 288.17970 * 19 18 17 21 21 N 1.50240 * 115.85691 * 44.86610 * 15 13 12 22 22 C 1.34773 * 130.84347 * 0.36561 * 21 15 13 23 23 O 1.21512 * 119.99774 * 6.41845 * 22 21 15 24 24 O 1.34634 * 120.00412 * 186.42883 * 22 21 15 25 25 C 1.45201 * 116.99940 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.47403 * 59.99786 * 25 24 22 27 27 C 1.53008 * 109.46707 * 179.97438 * 25 24 22 28 28 C 1.53000 * 109.47094 * 299.99009 * 25 24 22 29 29 H 1.09002 * 109.46647 * 60.00045 * 1 2 3 30 30 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47150 * 300.00359 * 1 2 3 32 32 H 0.97001 * 119.99851 * 179.97438 * 7 6 4 33 33 H 0.97009 * 119.99822 * 95.00083 * 12 2 1 34 34 H 1.09000 * 110.62370 * 277.30152 * 16 15 13 35 35 H 1.09001 * 110.62537 * 40.32158 * 16 15 13 36 36 H 1.08995 * 110.74898 * 241.69501 * 17 16 15 37 37 H 1.09004 * 110.48750 * 118.84874 * 17 16 15 38 38 H 1.08998 * 115.55825 * 200.20452 * 18 17 16 39 39 H 1.09003 * 110.62746 * 169.68577 * 19 18 17 40 40 H 1.09009 * 110.62515 * 46.66815 * 19 18 17 41 41 H 1.08997 * 110.62522 * 241.51480 * 20 19 18 42 42 H 1.08998 * 110.63229 * 118.48871 * 20 19 18 43 43 H 1.08994 * 109.47440 * 60.00171 * 26 25 24 44 44 H 1.09002 * 109.47073 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.46872 * 299.99402 * 26 25 24 46 46 H 1.08997 * 109.46982 * 59.99949 * 27 25 24 47 47 H 1.09002 * 109.46770 * 179.97438 * 27 25 24 48 48 H 1.09001 * 109.47032 * 299.99258 * 27 25 24 49 49 H 1.09008 * 109.46652 * 60.00755 * 28 25 24 50 50 H 1.08998 * 109.47047 * 179.97438 * 28 25 24 51 51 H 1.08997 * 109.47713 * 300.00735 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1618 -4.4118 10 1 2.4868 -0.1416 -5.1122 11 1 3.6293 -1.7586 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.9501 1.1780 2.3901 15 6 2.5416 -0.7518 3.6131 16 6 1.4304 -1.6392 4.2507 17 6 2.2550 -2.6399 5.1303 18 6 3.7322 -2.2008 4.8979 19 6 3.8754 -0.8450 5.6530 20 6 3.0643 0.1420 4.7778 21 7 3.6720 -1.7313 3.4720 22 6 4.4146 -2.0719 2.4001 23 8 4.2842 -1.4676 1.3539 24 8 5.3006 -3.0818 2.4882 25 6 6.0655 -3.3937 1.2941 26 6 6.8796 -2.1680 0.8751 27 6 7.0129 -4.5594 1.5854 28 6 5.1104 -3.7825 0.1638 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7095 1.1616 -3.4845 33 1 2.2490 -1.6318 1.1527 34 1 0.7660 -1.0365 4.8700 35 1 0.8671 -2.1631 3.4785 36 1 2.1020 -3.6655 4.7948 37 1 1.9845 -2.5365 6.1812 38 1 4.4879 -2.9509 5.1307 39 1 4.9213 -0.5426 5.7042 40 1 3.4453 -0.9147 6.6522 41 1 3.7081 0.9338 4.3949 42 1 2.2322 0.5618 5.3429 43 1 7.5600 -1.8911 1.6802 44 1 7.4534 -2.4021 -0.0216 45 1 6.2049 -1.3373 0.6676 46 1 6.4332 -5.4327 1.8841 47 1 7.5867 -4.7939 0.6888 48 1 7.6933 -4.2820 2.3905 49 1 4.4357 -2.9518 -0.0436 50 1 5.6845 -4.0162 -0.7328 51 1 4.5304 -4.6557 0.4623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931154961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:13 Heat of formation + Delta-G solvation = -108.680085 kcal Electronic energy + Delta-G solvation = -32891.883528 eV Core-core repulsion = 28791.520025 eV Total energy + Delta-G solvation = -4100.363502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.37502 -41.03305 -39.73957 -37.74230 -36.68316 -35.06693 -34.28824 -32.36138 -31.67438 -31.28931 -30.08775 -28.37105 -28.26169 -27.35570 -25.19446 -24.00053 -23.18463 -22.32231 -21.65257 -20.46910 -20.16726 -19.51304 -18.21193 -17.51040 -17.38636 -17.10015 -17.02533 -16.47325 -16.20202 -15.88341 -15.57761 -15.27587 -14.96091 -14.71088 -14.44214 -14.32908 -13.97732 -13.84165 -13.64456 -13.61557 -13.29782 -13.12426 -13.07111 -12.90894 -12.88393 -12.84234 -12.74045 -12.66524 -12.43980 -12.35242 -12.31636 -12.26646 -12.17147 -12.13723 -11.75632 -11.34427 -11.12925 -11.06089 -11.00186 -10.77846 -10.57987 -9.96972 -9.61029 -8.18526 -6.32970 0.83445 1.36242 1.38737 1.49506 1.69316 1.86903 2.31849 2.52097 2.82702 3.10675 3.45563 3.58612 3.59580 3.78951 3.81751 3.92032 3.96338 4.05393 4.18744 4.25826 4.32974 4.39956 4.50184 4.59397 4.60262 4.69238 4.75885 4.78882 4.83389 4.85655 4.91142 4.94194 4.99879 5.02906 5.05130 5.09572 5.15310 5.22102 5.30498 5.31940 5.32829 5.38898 5.42934 5.50497 5.62772 5.67308 5.92170 6.09695 6.55291 6.73085 6.94724 7.29550 7.33826 7.50188 8.88383 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.005596 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.330970 B = 5002.215129 C = 7161.055056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.273 3.727 3 H -0.012 1.012 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.669 5.669 13 C 0.517 3.483 14 O -0.600 6.600 15 C 0.143 3.857 16 C -0.118 4.118 17 C -0.112 4.112 18 C 0.125 3.875 19 C -0.117 4.117 20 C -0.109 4.109 21 N -0.618 5.618 22 C 0.653 3.347 23 O -0.573 6.573 24 O -0.356 6.356 25 C 0.132 3.868 26 C -0.179 4.179 27 C -0.128 4.128 28 C -0.183 4.183 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.395 0.605 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.041 0.959 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.081 0.919 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.983 -14.752 19.247 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.169 3.831 3 H 0.006 0.994 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.316 5.316 13 C 0.302 3.698 14 O -0.482 6.482 15 C 0.057 3.943 16 C -0.157 4.157 17 C -0.150 4.150 18 C 0.025 3.975 19 C -0.155 4.155 20 C -0.148 4.148 21 N -0.363 5.363 22 C 0.409 3.591 23 O -0.461 6.461 24 O -0.271 6.271 25 C 0.096 3.904 26 C -0.236 4.236 27 C -0.185 4.185 28 C -0.241 4.241 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.060 0.940 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.864 -13.731 18.570 24.737 hybrid contribution 0.232 0.194 -1.804 1.829 sum 9.095 -13.536 16.766 23.389 Atomic orbital electron populations 1.21872 0.97709 0.99384 0.99796 1.18306 0.91049 0.91457 0.82261 0.99375 1.21372 1.31505 1.12945 0.90841 0.92311 1.25758 0.95089 0.95721 1.02044 1.70048 1.37428 1.23918 1.24405 0.85399 0.78843 0.78286 0.78160 1.19120 1.20779 1.19572 1.46218 1.62299 1.13882 1.09164 1.20257 0.77234 0.86933 0.85355 1.90620 1.54893 1.16123 1.86585 1.23177 0.88357 0.90287 0.92516 1.23336 0.95418 0.97385 0.99541 1.23281 0.91756 0.98400 1.01605 1.24096 0.99475 0.97479 0.76448 1.23025 1.00638 0.92393 0.99437 1.22776 1.00983 0.96878 0.94134 1.49322 1.34251 1.43517 1.09160 1.17863 0.78798 0.79716 0.82709 1.91161 1.69715 1.56050 1.29221 1.86257 1.50173 1.48630 1.42025 1.22307 0.90163 0.96276 0.81688 1.22445 1.00241 0.98333 1.02628 1.21830 0.97688 0.94913 1.04043 1.22494 1.00548 1.02270 0.98757 0.91187 0.94200 0.96631 0.92606 0.76897 0.87434 0.92053 0.90079 0.85828 0.83641 0.90999 0.85653 0.93965 0.87881 0.91486 0.89762 0.93337 0.90648 0.88486 0.90603 0.92842 0.90047 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 2 C 0.27 15.94 2.60 44.25 0.12 16.05 16 3 H -0.01 -0.80 7.51 -2.39 -0.02 -0.82 16 4 C -0.53 -31.42 8.73 25.60 0.22 -31.20 16 5 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -56.18 11.32 21.45 0.24 -55.93 16 8 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.67 -33.23 3.52 -446.09 -1.57 -34.80 16 13 C 0.52 23.95 6.53 87.66 0.57 24.52 16 14 O -0.60 -32.74 16.17 -3.02 -0.05 -32.79 16 15 C 0.14 4.52 1.57 4.10 0.01 4.53 16 16 C -0.12 -2.61 6.22 32.87 0.20 -2.41 16 17 C -0.11 -1.48 6.49 32.87 0.21 -1.26 16 18 C 0.13 2.07 5.34 46.23 0.25 2.32 16 19 C -0.12 -1.76 6.44 32.21 0.21 -1.56 16 20 C -0.11 -2.76 5.66 32.21 0.18 -2.58 16 21 N -0.62 -17.82 2.91 -846.87 -2.46 -20.28 16 22 C 0.65 22.67 7.62 129.79 0.99 23.66 16 23 O -0.57 -25.30 8.48 19.80 0.17 -25.13 16 24 O -0.36 -10.15 9.77 -55.43 -0.54 -10.70 16 25 C 0.13 3.43 1.13 -10.79 -0.01 3.41 16 26 C -0.18 -5.09 8.37 71.98 0.60 -4.48 16 27 C -0.13 -2.10 8.85 71.98 0.64 -1.46 16 28 C -0.18 -5.41 8.37 71.98 0.60 -4.81 16 29 H 0.07 4.12 6.07 -2.39 -0.01 4.10 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.39 18.71 6.45 -92.70 -0.60 18.11 16 34 H 0.11 1.96 7.79 -2.39 -0.02 1.94 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.12 0.72 7.82 -2.38 -0.02 0.70 16 38 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.13 0.91 7.82 -2.38 -0.02 0.89 16 41 H 0.04 1.35 8.13 -2.39 -0.02 1.33 16 42 H 0.10 2.21 7.79 -2.39 -0.02 2.19 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.85 5.88 -2.38 -0.01 1.83 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.05 2.11 5.88 -2.38 -0.01 2.10 16 50 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -82.35 394.54 4.04 -78.31 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.32 Total: 34.00 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.91 Total: 19.57 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.79 Total: -111.01 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -0.42 Total: -68.62 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -82.35 4.04 -78.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931154961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.368 kcal (2) G-P(sol) polarization free energy of solvation -82.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds