Wall clock time and date at job start Tue Mar 31 2020 21:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.50696 * 109.46928 * 240.00123 * 2 1 3 5 5 H 1.08003 * 120.00274 * 274.78517 * 4 2 1 6 6 C 1.37880 * 120.00020 * 94.77907 * 4 2 1 7 7 N 1.31517 * 119.99666 * 184.62141 * 6 4 2 8 8 Si 1.86800 * 120.00114 * 4.62640 * 6 4 2 9 9 H 1.48501 * 109.47103 * 94.55784 * 8 6 4 10 10 H 1.48492 * 109.47031 * 214.55903 * 8 6 4 11 11 H 1.48498 * 109.46757 * 334.56037 * 8 6 4 12 12 N 1.46501 * 109.47262 * 120.00268 * 2 1 3 13 13 C 1.34773 * 119.99855 * 279.18653 * 12 2 1 14 14 O 1.21287 * 119.99936 * 5.33334 * 13 12 2 15 15 C 1.50700 * 120.00217 * 185.32857 * 13 12 2 16 16 C 1.52366 * 116.93485 * 171.38791 * 15 13 12 17 17 C 1.52677 * 116.24974 * 102.85882 * 15 13 12 18 18 H 1.09002 * 117.36665 * 0.27775 * 17 15 13 19 19 C 1.52220 * 119.50989 * 212.70608 * 17 15 13 20 20 C 1.51337 * 112.81954 * 22.59457 * 19 17 15 21 21 C 1.51927 * 113.09007 * 311.72029 * 20 19 17 22 22 N 1.45660 * 111.56338 * 56.66738 * 21 20 19 23 23 C 1.34773 * 119.49052 * 141.13277 * 22 21 20 24 24 O 1.21508 * 120.00243 * 174.71775 * 23 22 21 25 25 O 1.34641 * 119.99769 * 354.70991 * 23 22 21 26 26 C 1.45205 * 116.99605 * 183.00567 * 25 23 22 27 27 C 1.52996 * 109.47270 * 59.74898 * 26 25 23 28 28 C 1.53007 * 109.46812 * 179.75068 * 26 25 23 29 29 C 1.52999 * 109.47276 * 299.74719 * 26 25 23 30 30 H 1.08998 * 109.47608 * 184.96247 * 1 2 3 31 31 H 1.09005 * 109.47035 * 304.96223 * 1 2 3 32 32 H 1.09002 * 109.47118 * 64.95871 * 1 2 3 33 33 H 0.97006 * 119.99822 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00123 * 99.18086 * 12 2 1 35 35 H 1.09003 * 117.50930 * 1.05417 * 16 15 13 36 36 H 1.08996 * 117.51146 * 146.10933 * 16 15 13 37 37 H 1.09006 * 108.81135 * 143.45503 * 19 17 15 38 38 H 1.08997 * 108.81385 * 261.84110 * 19 17 15 39 39 H 1.08995 * 108.74383 * 72.81819 * 20 19 17 40 40 H 1.09005 * 108.73874 * 191.03014 * 20 19 17 41 41 H 1.09003 * 109.21481 * 296.07858 * 21 20 19 42 42 H 1.09000 * 109.02645 * 177.13373 * 21 20 19 43 43 H 1.09006 * 109.47009 * 54.69958 * 27 26 25 44 44 H 1.09001 * 109.47154 * 174.69607 * 27 26 25 45 45 H 1.08993 * 109.47371 * 294.70090 * 27 26 25 46 46 H 1.08997 * 109.47297 * 60.00233 * 28 26 25 47 47 H 1.08996 * 109.46912 * 180.02562 * 28 26 25 48 48 H 1.09006 * 109.46783 * 299.99986 * 28 26 25 49 49 H 1.08994 * 109.47184 * 60.00283 * 29 26 25 50 50 H 1.09006 * 109.47183 * 180.02562 * 29 26 25 51 51 H 1.08997 * 109.47433 * 300.00134 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1387 -1.7851 -1.2279 6 6 2.3558 0.0117 -2.3596 7 7 2.7070 -0.6138 -3.4619 8 14 2.2955 1.8784 -2.3236 9 1 3.6469 2.4115 -2.0154 10 1 1.8538 2.3850 -3.6478 11 1 1.3381 2.3226 -1.2791 12 7 2.0184 -0.6907 1.1961 13 6 2.0673 -0.0416 2.3762 14 8 1.6178 1.0810 2.4700 15 6 2.6804 -0.7106 3.5794 16 6 2.8837 0.1510 4.8195 17 6 4.0883 -0.2584 3.9592 18 1 4.5497 0.5140 3.3438 19 6 5.0554 -1.2576 4.5784 20 6 4.7015 -2.6935 4.2567 21 6 3.2350 -3.0128 4.4923 22 7 2.3651 -2.1273 3.7303 23 6 1.2488 -2.6229 3.1604 24 8 0.4675 -1.8764 2.6048 25 8 0.9995 -3.9452 3.2067 26 6 -0.1865 -4.4169 2.5146 27 6 -0.0843 -4.0647 1.0292 28 6 -0.2992 -5.9347 2.6723 29 6 -1.4260 -3.7487 3.1130 30 1 -0.3634 -1.0238 0.0889 31 1 -0.3633 0.5889 0.8422 32 1 -0.3633 0.4350 -0.9311 33 1 2.9351 -0.1057 -4.2562 34 1 2.3064 -1.6151 1.1388 35 1 2.5590 1.1904 4.7691 36 1 2.7712 -0.3302 5.7909 37 1 6.0594 -1.0514 4.2072 38 1 5.0481 -1.1295 5.6608 39 1 4.9416 -2.8876 3.2114 40 1 5.3051 -3.3514 4.8820 41 1 3.0103 -2.9047 5.5535 42 1 3.0432 -4.0432 4.1931 43 1 0.8469 -4.4619 0.6249 44 1 -0.9279 -4.5000 0.4936 45 1 -0.0988 -2.9813 0.9109 46 1 -0.3721 -6.1856 3.7304 47 1 -1.1892 -6.2889 2.1523 48 1 0.5839 -6.4108 2.2459 49 1 -1.3458 -2.6675 3.0007 50 1 -2.3164 -4.1032 2.5937 51 1 -1.4989 -3.9996 4.1712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931156622.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:16 Heat of formation + Delta-G solvation = -81.802961 kcal Electronic energy + Delta-G solvation = -33013.340157 eV Core-core repulsion = 28914.142134 eV Total energy + Delta-G solvation = -4099.198023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25794 -39.73639 -37.95160 -36.71104 -34.87196 -34.45140 -33.36105 -32.80523 -32.17079 -29.55877 -27.38734 -27.20613 -26.78682 -25.18861 -24.57831 -22.99748 -22.20828 -20.70617 -19.88450 -19.60737 -18.54462 -18.27658 -17.08191 -16.44427 -16.24531 -15.96308 -15.34903 -14.99734 -14.74877 -14.52466 -14.37116 -14.14563 -13.87797 -13.66871 -13.45367 -13.33295 -13.22630 -12.51378 -12.47703 -12.43487 -12.28314 -12.05721 -11.83456 -11.76656 -11.71862 -11.47764 -11.28862 -11.20504 -11.13916 -11.00809 -10.93669 -10.73364 -10.68827 -10.42111 -10.24194 -10.20934 -9.77814 -9.74856 -9.07805 -9.00991 -8.64611 -8.48133 -7.78456 -6.17073 -4.18798 2.02120 2.85955 3.18145 3.28534 3.37607 3.47562 3.72967 3.94057 4.05024 4.38413 4.57252 4.64992 4.73673 4.77584 4.81668 4.86446 4.91610 4.98684 5.17111 5.23463 5.37159 5.44937 5.47094 5.50659 5.60950 5.66269 5.70313 5.73575 5.79242 5.83701 5.87063 5.94820 5.99710 6.03477 6.07874 6.17838 6.36743 6.44666 6.50399 6.57148 6.67341 6.83108 6.93645 7.14037 7.35186 7.42460 7.55926 7.74288 8.23715 8.46250 8.73498 8.85006 9.12750 9.46620 10.94873 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005520 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.184408 B = 5071.064275 C = 6685.098565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.236 3.764 3 H 0.045 0.955 4 C -0.524 4.524 5 H 0.076 0.924 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.256 1.256 12 N -0.678 5.678 13 C 0.558 3.442 14 O -0.554 6.554 15 C 0.102 3.898 16 C -0.152 4.152 17 C -0.136 4.136 18 H 0.119 0.881 19 C -0.087 4.087 20 C -0.134 4.134 21 C 0.116 3.884 22 N -0.561 5.561 23 C 0.641 3.359 24 O -0.525 6.525 25 O -0.363 6.363 26 C 0.137 3.863 27 C -0.185 4.185 28 C -0.138 4.138 29 C -0.183 4.183 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.386 0.614 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.068 0.932 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -9.510 18.037 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.134 3.866 3 H 0.062 0.938 4 C -0.562 4.562 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.697 3.303 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.180 1.180 12 N -0.324 5.324 13 C 0.341 3.659 14 O -0.434 6.434 15 C 0.013 3.987 16 C -0.191 4.191 17 C -0.156 4.156 18 H 0.137 0.863 19 C -0.125 4.125 20 C -0.172 4.172 21 C -0.006 4.006 22 N -0.301 5.301 23 C 0.396 3.604 24 O -0.410 6.410 25 O -0.279 6.279 26 C 0.101 3.899 27 C -0.242 4.242 28 C -0.195 4.195 29 C -0.240 4.240 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.219 0.781 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.087 0.913 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.512 -8.539 17.630 19.595 hybrid contribution 0.139 0.309 -0.157 0.374 sum 0.651 -8.229 17.472 19.324 Atomic orbital electron populations 1.22095 0.98316 1.00274 0.98900 1.19138 0.91351 0.93659 0.82435 0.93756 1.21016 1.44707 0.95515 0.94969 0.90643 1.24917 0.93784 0.98490 0.95167 1.69898 1.45278 1.35980 1.01697 0.86924 0.79380 0.86182 0.77823 1.20155 1.21111 1.17983 1.46348 1.62725 1.15159 1.08178 1.18762 0.78673 0.85597 0.82904 1.90634 1.48598 1.19875 1.84270 1.20589 1.00245 0.80221 0.97680 1.23541 1.00056 1.01387 0.94150 1.22670 0.88801 1.01415 1.02673 0.86312 1.20571 0.98451 0.92992 1.00448 1.21224 0.95369 0.97070 1.03519 1.21147 0.89886 0.94110 0.95499 1.45568 1.22529 1.07031 1.55018 1.18012 0.82056 0.81570 0.78800 1.91084 1.45895 1.58180 1.45824 1.86249 1.47149 1.22821 1.71649 1.22090 0.81790 0.93868 0.92165 1.22546 1.02572 1.05994 0.93127 1.21843 1.02967 0.92019 1.02712 1.22519 0.96586 1.04500 1.00360 0.93488 0.94956 0.93720 0.92435 0.78064 0.86574 0.88072 0.90612 0.91310 0.90929 0.90109 0.92118 0.88816 0.91939 0.91310 0.88568 0.91857 0.90247 0.91504 0.88962 0.91345 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.36 37.16 0.35 -2.99 16 2 C 0.24 6.00 2.12 -69.08 -0.15 5.86 16 3 H 0.04 1.21 4.75 -51.93 -0.25 0.97 16 4 C -0.52 -14.57 9.03 -34.44 -0.31 -14.88 16 5 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 8 Si 0.87 22.01 27.29 -169.99 -4.64 17.37 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.48 6.39 56.52 0.36 -6.12 16 12 N -0.68 -15.15 3.54 -54.93 -0.19 -15.34 16 13 C 0.56 11.85 5.36 -10.99 -0.06 11.79 16 14 O -0.55 -13.53 15.56 5.55 0.09 -13.45 16 15 C 0.10 1.64 2.82 -133.78 -0.38 1.26 16 16 C -0.15 -2.04 9.49 -26.75 -0.25 -2.30 16 17 C -0.14 -1.75 5.89 -90.88 -0.54 -2.29 16 18 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 19 C -0.09 -0.81 5.81 -27.97 -0.16 -0.97 16 20 C -0.13 -1.19 5.89 -28.12 -0.17 -1.36 16 21 C 0.12 1.20 6.16 -5.04 -0.03 1.17 16 22 N -0.56 -8.06 3.05 -168.08 -0.51 -8.57 16 23 C 0.64 10.39 6.48 54.05 0.35 10.74 16 24 O -0.52 -10.06 8.49 -19.28 -0.16 -10.23 16 25 O -0.36 -5.10 8.47 -40.33 -0.34 -5.44 16 26 C 0.14 1.76 1.13 -90.62 -0.10 1.66 16 27 C -0.19 -2.74 8.29 37.16 0.31 -2.43 16 28 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 29 C -0.18 -2.32 8.38 37.16 0.31 -2.01 16 30 H 0.05 1.10 7.16 -51.93 -0.37 0.73 16 31 H 0.03 0.78 7.72 -51.93 -0.40 0.38 16 32 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.39 8.31 7.20 -40.82 -0.29 8.02 16 35 H 0.12 1.70 7.63 -51.93 -0.40 1.30 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.53 8.04 -51.93 -0.42 0.12 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.92 6.94 -51.93 -0.36 0.56 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 1.77 5.14 -51.93 -0.27 1.50 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.09 1.47 5.79 -51.93 -0.30 1.17 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -33.15 392.22 -8.25 -41.39 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.57 Total: 9.77 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.60 Total: 4.45 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.07 Total: -49.78 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.42 Total: -29.11 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.64 Total: 17.37 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.15 -8.25 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156622.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.408 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds