Wall clock time and date at job start Tue Mar 31 2020 21:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.50696 * 109.46928 * 240.00123 * 2 1 3 5 5 H 1.08003 * 120.00274 * 274.78517 * 4 2 1 6 6 C 1.37880 * 120.00020 * 94.77907 * 4 2 1 7 7 N 1.31517 * 119.99666 * 184.62141 * 6 4 2 8 8 Si 1.86800 * 120.00114 * 4.62640 * 6 4 2 9 9 H 1.48501 * 109.47103 * 94.55784 * 8 6 4 10 10 H 1.48492 * 109.47031 * 214.55903 * 8 6 4 11 11 H 1.48498 * 109.46757 * 334.56037 * 8 6 4 12 12 N 1.46501 * 109.47262 * 120.00268 * 2 1 3 13 13 C 1.34773 * 119.99855 * 279.18653 * 12 2 1 14 14 O 1.21287 * 119.99936 * 5.33334 * 13 12 2 15 15 C 1.50700 * 120.00217 * 185.32857 * 13 12 2 16 16 C 1.52366 * 116.93485 * 171.38791 * 15 13 12 17 17 C 1.52677 * 116.24974 * 102.85882 * 15 13 12 18 18 H 1.09002 * 117.36665 * 0.27775 * 17 15 13 19 19 C 1.52220 * 119.50989 * 212.70608 * 17 15 13 20 20 C 1.51337 * 112.81954 * 22.59457 * 19 17 15 21 21 C 1.51927 * 113.09007 * 311.72029 * 20 19 17 22 22 N 1.45660 * 111.56338 * 56.66738 * 21 20 19 23 23 C 1.34773 * 119.49052 * 141.13277 * 22 21 20 24 24 O 1.21508 * 120.00243 * 174.71775 * 23 22 21 25 25 O 1.34641 * 119.99769 * 354.70991 * 23 22 21 26 26 C 1.45205 * 116.99605 * 183.00567 * 25 23 22 27 27 C 1.52996 * 109.47270 * 59.74898 * 26 25 23 28 28 C 1.53007 * 109.46812 * 179.75068 * 26 25 23 29 29 C 1.52999 * 109.47276 * 299.74719 * 26 25 23 30 30 H 1.08998 * 109.47608 * 184.96247 * 1 2 3 31 31 H 1.09005 * 109.47035 * 304.96223 * 1 2 3 32 32 H 1.09002 * 109.47118 * 64.95871 * 1 2 3 33 33 H 0.97006 * 119.99822 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00123 * 99.18086 * 12 2 1 35 35 H 1.09003 * 117.50930 * 1.05417 * 16 15 13 36 36 H 1.08996 * 117.51146 * 146.10933 * 16 15 13 37 37 H 1.09006 * 108.81135 * 143.45503 * 19 17 15 38 38 H 1.08997 * 108.81385 * 261.84110 * 19 17 15 39 39 H 1.08995 * 108.74383 * 72.81819 * 20 19 17 40 40 H 1.09005 * 108.73874 * 191.03014 * 20 19 17 41 41 H 1.09003 * 109.21481 * 296.07858 * 21 20 19 42 42 H 1.09000 * 109.02645 * 177.13373 * 21 20 19 43 43 H 1.09006 * 109.47009 * 54.69958 * 27 26 25 44 44 H 1.09001 * 109.47154 * 174.69607 * 27 26 25 45 45 H 1.08993 * 109.47371 * 294.70090 * 27 26 25 46 46 H 1.08997 * 109.47297 * 60.00233 * 28 26 25 47 47 H 1.08996 * 109.46912 * 180.02562 * 28 26 25 48 48 H 1.09006 * 109.46783 * 299.99986 * 28 26 25 49 49 H 1.08994 * 109.47184 * 60.00283 * 29 26 25 50 50 H 1.09006 * 109.47183 * 180.02562 * 29 26 25 51 51 H 1.08997 * 109.47433 * 300.00134 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1387 -1.7851 -1.2279 6 6 2.3558 0.0117 -2.3596 7 7 2.7070 -0.6138 -3.4619 8 14 2.2955 1.8784 -2.3236 9 1 3.6469 2.4115 -2.0154 10 1 1.8538 2.3850 -3.6478 11 1 1.3381 2.3226 -1.2791 12 7 2.0184 -0.6907 1.1961 13 6 2.0673 -0.0416 2.3762 14 8 1.6178 1.0810 2.4700 15 6 2.6804 -0.7106 3.5794 16 6 2.8837 0.1510 4.8195 17 6 4.0883 -0.2584 3.9592 18 1 4.5497 0.5140 3.3438 19 6 5.0554 -1.2576 4.5784 20 6 4.7015 -2.6935 4.2567 21 6 3.2350 -3.0128 4.4923 22 7 2.3651 -2.1273 3.7303 23 6 1.2488 -2.6229 3.1604 24 8 0.4675 -1.8764 2.6048 25 8 0.9995 -3.9452 3.2067 26 6 -0.1865 -4.4169 2.5146 27 6 -0.0843 -4.0647 1.0292 28 6 -0.2992 -5.9347 2.6723 29 6 -1.4260 -3.7487 3.1130 30 1 -0.3634 -1.0238 0.0889 31 1 -0.3633 0.5889 0.8422 32 1 -0.3633 0.4350 -0.9311 33 1 2.9351 -0.1057 -4.2562 34 1 2.3064 -1.6151 1.1388 35 1 2.5590 1.1904 4.7691 36 1 2.7712 -0.3302 5.7909 37 1 6.0594 -1.0514 4.2072 38 1 5.0481 -1.1295 5.6608 39 1 4.9416 -2.8876 3.2114 40 1 5.3051 -3.3514 4.8820 41 1 3.0103 -2.9047 5.5535 42 1 3.0432 -4.0432 4.1931 43 1 0.8469 -4.4619 0.6249 44 1 -0.9279 -4.5000 0.4936 45 1 -0.0988 -2.9813 0.9109 46 1 -0.3721 -6.1856 3.7304 47 1 -1.1892 -6.2889 2.1523 48 1 0.5839 -6.4108 2.2459 49 1 -1.3458 -2.6675 3.0007 50 1 -2.3164 -4.1032 2.5937 51 1 -1.4989 -3.9996 4.1712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931156622.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:15 Heat of formation + Delta-G solvation = -103.307291 kcal Electronic energy + Delta-G solvation = -33014.272654 eV Core-core repulsion = 28914.142134 eV Total energy + Delta-G solvation = -4100.130520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46280 -40.97282 -39.45369 -37.88595 -36.70536 -35.66651 -34.49143 -34.28239 -33.70699 -31.50131 -28.34607 -28.26315 -27.66604 -27.35305 -25.90722 -24.08845 -23.43323 -22.24016 -21.32490 -20.91595 -19.98733 -19.55988 -18.55625 -18.01429 -17.53023 -17.18368 -17.01996 -16.24423 -16.23005 -15.72919 -15.47478 -15.31886 -15.26649 -14.99487 -14.78978 -14.58600 -14.46938 -14.30974 -14.26473 -13.48071 -13.33580 -13.28867 -13.12143 -13.03982 -12.90537 -12.85648 -12.79584 -12.68279 -12.47591 -12.41196 -12.32921 -12.18795 -11.88843 -11.75948 -11.69947 -11.35449 -11.28897 -11.23279 -10.97072 -10.87208 -10.62826 -9.66349 -9.58957 -8.41550 -6.47325 0.89495 1.24917 1.29425 1.43168 1.59548 1.77532 2.24852 2.33365 2.72964 2.82288 2.99755 3.48476 3.63891 3.78443 3.81105 3.83515 3.85950 3.97182 4.06996 4.11268 4.38011 4.44950 4.49268 4.61527 4.62772 4.68177 4.75297 4.77241 4.78405 4.83699 4.84835 4.86291 4.88117 4.92713 5.05257 5.08730 5.13526 5.15985 5.23870 5.29186 5.34123 5.34973 5.38443 5.45134 5.48672 5.55514 5.77281 6.09272 6.24815 6.54298 6.89485 7.17373 7.27871 7.41915 8.73639 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005520 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.184408 B = 5071.064275 C = 6685.098565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.243 3.757 3 H 0.027 0.973 4 C -0.523 4.523 5 H 0.048 0.952 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.926 3.074 9 H -0.268 1.268 10 H -0.272 1.272 11 H -0.261 1.261 12 N -0.679 5.679 13 C 0.552 3.448 14 O -0.594 6.594 15 C 0.074 3.926 16 C -0.137 4.137 17 C -0.117 4.117 18 H 0.105 0.895 19 C -0.084 4.084 20 C -0.129 4.129 21 C 0.109 3.891 22 N -0.556 5.556 23 C 0.632 3.368 24 O -0.562 6.562 25 O -0.355 6.355 26 C 0.133 3.867 27 C -0.181 4.181 28 C -0.131 4.131 29 C -0.176 4.176 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.042 0.958 33 H 0.271 0.729 34 H 0.389 0.611 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.084 0.916 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -10.786 20.728 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.140 3.860 3 H 0.045 0.955 4 C -0.561 4.561 5 H 0.066 0.934 6 C -0.164 4.164 7 N -0.566 5.566 8 Si 0.750 3.250 9 H -0.193 1.193 10 H -0.197 1.197 11 H -0.186 1.186 12 N -0.325 5.325 13 C 0.339 3.661 14 O -0.476 6.476 15 C -0.015 4.015 16 C -0.176 4.176 17 C -0.137 4.137 18 H 0.124 0.876 19 C -0.121 4.121 20 C -0.167 4.167 21 C -0.012 4.012 22 N -0.297 5.297 23 C 0.387 3.613 24 O -0.450 6.450 25 O -0.270 6.270 26 C 0.096 3.904 27 C -0.239 4.239 28 C -0.187 4.187 29 C -0.233 4.233 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.222 0.778 35 H 0.117 0.883 36 H 0.151 0.849 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.103 0.897 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.660 -9.854 20.352 22.673 hybrid contribution -0.237 0.647 -0.988 1.205 sum 1.423 -9.207 19.364 21.489 Atomic orbital electron populations 1.21937 0.97757 1.00148 0.98352 1.18846 0.91656 0.92583 0.82936 0.95472 1.21059 1.44546 0.94330 0.96143 0.93404 1.25569 0.93592 1.02490 0.94782 1.69984 1.46496 1.37675 1.02399 0.86048 0.79547 0.81324 0.78081 1.19290 1.19716 1.18560 1.46104 1.63141 1.15144 1.08088 1.19539 0.77652 0.85178 0.83757 1.90592 1.50211 1.21697 1.85112 1.20311 1.03033 0.81475 0.96682 1.23630 0.99518 1.00082 0.94349 1.22858 0.88114 1.01416 1.01308 0.87643 1.20669 0.97646 0.91937 1.01879 1.21247 0.94728 0.97521 1.03229 1.21498 0.90089 0.93446 0.96153 1.45665 1.22411 1.06674 1.54902 1.18315 0.82305 0.81989 0.78668 1.91074 1.47371 1.59083 1.47456 1.86269 1.47680 1.21501 1.71526 1.22327 0.81480 0.96103 0.90462 1.22476 1.02758 1.03249 0.95373 1.21847 1.03993 0.88785 1.04117 1.22434 0.97268 1.02122 1.01497 0.93373 0.95672 0.93894 0.91942 0.77766 0.88301 0.84875 0.89313 0.88413 0.92823 0.86398 0.89686 0.88310 0.92890 0.89723 0.92553 0.90274 0.88435 0.91224 0.92566 0.89721 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 9.36 71.98 0.67 -5.59 16 2 C 0.24 12.86 2.12 44.24 0.09 12.96 16 3 H 0.03 1.54 4.75 -2.39 -0.01 1.53 16 4 C -0.52 -30.21 9.03 25.60 0.23 -29.98 16 5 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 6 C 0.04 2.11 5.47 84.65 0.46 2.58 16 7 N -0.93 -56.48 13.96 21.45 0.30 -56.19 16 8 Si 0.93 46.17 27.29 68.60 1.87 48.04 16 9 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.26 -13.18 6.39 99.48 0.64 -12.54 16 12 N -0.68 -31.72 3.54 -446.10 -1.58 -33.30 16 13 C 0.55 24.25 5.36 87.66 0.47 24.72 16 14 O -0.59 -30.12 15.56 -3.05 -0.05 -30.17 16 15 C 0.07 2.36 2.82 2.65 0.01 2.37 16 16 C -0.14 -3.44 9.49 30.58 0.29 -3.15 16 17 C -0.12 -2.81 5.89 -10.96 -0.06 -2.87 16 18 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 19 C -0.08 -1.23 5.81 29.79 0.17 -1.05 16 20 C -0.13 -1.82 5.89 29.70 0.17 -1.65 16 21 C 0.11 1.91 6.16 86.18 0.53 2.44 16 22 N -0.56 -15.41 3.05 -916.09 -2.80 -18.20 16 23 C 0.63 20.63 6.48 129.79 0.84 21.48 16 24 O -0.56 -22.52 8.49 19.82 0.17 -22.35 16 25 O -0.36 -9.72 8.47 -55.50 -0.47 -10.19 16 26 C 0.13 3.32 1.13 -10.79 -0.01 3.30 16 27 C -0.18 -5.53 8.29 71.98 0.60 -4.94 16 28 C -0.13 -2.16 8.85 71.98 0.64 -1.53 16 29 C -0.18 -4.40 8.38 71.98 0.60 -3.80 16 30 H 0.05 2.39 7.16 -2.39 -0.02 2.37 16 31 H 0.02 1.27 7.72 -2.38 -0.02 1.25 16 32 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 34 H 0.39 17.64 7.20 -92.71 -0.67 16.98 16 35 H 0.10 2.85 7.63 -2.39 -0.02 2.83 16 36 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.10 0.96 8.04 -2.39 -0.02 0.94 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.66 6.94 -2.39 -0.02 1.64 16 43 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 45 H 0.06 2.20 5.14 -2.39 -0.01 2.19 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.13 8.14 -2.38 -0.02 1.12 16 49 H 0.06 1.85 5.79 -2.39 -0.01 1.84 16 50 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 51 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -76.32 392.22 3.35 -72.97 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.19 Total: 34.10 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.71 Total: 15.29 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.07 Total: -107.69 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -0.35 Total: -62.71 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.87 Total: 48.04 kcal Total: -76.32 3.35 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156622.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.336 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds