Wall clock time and date at job start Tue Mar 31 2020 21:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.53004 * 112.94366 * 350.05434 * 3 2 1 5 5 C 1.50705 * 109.46870 * 309.66761 * 4 3 2 6 6 O 1.21280 * 120.00256 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99329 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99417 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47350 * 325.00144 * 8 7 5 10 10 C 1.53002 * 109.46904 * 85.00381 * 8 7 5 11 11 C 1.50706 * 109.47189 * 204.99893 * 8 7 5 12 12 H 1.07996 * 119.99625 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00165 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00101 * 180.02562 * 13 11 8 15 15 Si 1.86801 * 119.99759 * 359.97438 * 13 11 8 16 16 H 1.48499 * 109.46967 * 90.00524 * 15 13 11 17 17 H 1.48507 * 109.47025 * 209.99990 * 15 13 11 18 18 H 1.48492 * 109.47374 * 330.00181 * 15 13 11 19 19 C 1.53946 * 113.73854 * 218.46268 * 3 2 1 20 20 N 1.47812 * 86.03249 * 222.08407 * 19 3 2 21 21 C 1.34778 * 134.45561 * 204.64583 * 20 19 3 22 22 O 1.21503 * 120.00285 * 179.86773 * 21 20 19 23 23 O 1.34646 * 119.99893 * 359.86595 * 21 20 19 24 24 C 1.45199 * 116.99983 * 180.02562 * 23 21 20 25 25 C 1.52996 * 109.47253 * 60.00172 * 24 23 21 26 26 C 1.53003 * 109.46964 * 180.02562 * 24 23 21 27 27 C 1.53001 * 109.46984 * 300.00124 * 24 23 21 28 28 C 1.47580 * 91.05302 * 24.55063 * 20 19 3 29 29 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 30 30 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 31 31 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 32 32 H 1.08997 * 109.46814 * 69.66553 * 4 3 2 33 33 H 1.08999 * 109.47096 * 189.67055 * 4 3 2 34 34 H 0.96996 * 120.00379 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.46893 * 299.99571 * 10 8 7 36 36 H 1.09001 * 109.47310 * 59.99739 * 10 8 7 37 37 H 1.09001 * 109.46962 * 179.97438 * 10 8 7 38 38 H 0.96996 * 119.99994 * 179.97438 * 14 13 11 39 39 H 1.08997 * 113.77152 * 336.34703 * 19 3 2 40 40 H 1.09002 * 113.77030 * 107.74644 * 19 3 2 41 41 H 1.08997 * 109.47194 * 59.99642 * 25 24 23 42 42 H 1.09002 * 109.47447 * 180.02562 * 25 24 23 43 43 H 1.09008 * 109.46828 * 299.99663 * 25 24 23 44 44 H 1.09002 * 109.47031 * 59.99754 * 26 24 23 45 45 H 1.09002 * 109.46628 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.46832 * 299.99959 * 26 24 23 47 47 H 1.08999 * 109.47535 * 59.99793 * 27 24 23 48 48 H 1.09001 * 109.46942 * 180.02562 * 27 24 23 49 49 H 1.09004 * 109.46956 * 299.99555 * 27 24 23 50 50 H 1.09001 * 113.76462 * 221.15053 * 28 20 19 51 51 H 1.08994 * 113.86865 * 89.76796 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.1599 2.5156 -0.2434 5 6 0.3076 2.2693 -1.4616 6 8 0.4123 1.2280 -2.0745 7 7 -0.5709 3.2063 -1.8699 8 6 -1.3991 2.9671 -3.0545 9 1 -0.8293 2.3948 -3.7867 10 6 -2.6486 2.1807 -2.6529 11 6 -1.8080 4.2868 -3.6564 12 1 -1.4832 5.2112 -3.2021 13 6 -2.5969 4.3141 -4.7868 14 7 -2.9533 5.4658 -5.3123 15 14 -3.1581 2.7151 -5.5728 16 1 -4.4549 2.3006 -4.9799 17 1 -3.3235 2.9138 -7.0352 18 1 -2.1422 1.6601 -5.3284 19 6 3.3290 1.2901 -0.8765 20 7 3.9794 2.0238 0.2296 21 6 5.0313 2.8620 0.3164 22 8 5.3469 3.3314 1.3918 23 8 5.7323 3.1793 -0.7885 24 6 6.8528 4.0873 -0.6201 25 6 7.8663 3.4728 0.3474 26 6 7.5218 4.3285 -1.9748 27 6 6.3508 5.4177 -0.0556 28 6 3.0137 1.4722 1.1996 29 1 -0.5400 -0.9353 0.0045 30 1 -0.5400 0.9353 -0.0045 31 1 1.8500 -0.9353 0.0046 32 1 0.5180 2.6699 0.6240 33 1 1.7744 3.4015 -0.4030 34 1 -0.6549 4.0389 -1.3795 35 1 -2.3528 1.2261 -2.2176 36 1 -3.2183 2.7529 -1.9207 37 1 -3.2650 2.0031 -3.5342 38 1 -3.5080 5.4849 -6.1078 39 1 3.7370 0.2930 -1.0421 40 1 3.2345 1.8703 -1.7945 41 1 8.2239 2.5249 -0.0547 42 1 8.7073 4.1545 0.4742 43 1 7.3894 3.3013 1.3125 44 1 6.7995 4.7665 -2.6638 45 1 8.3632 5.0098 -1.8483 46 1 7.8793 3.3808 -2.3773 47 1 5.8739 5.2463 0.9094 48 1 7.1919 6.0995 0.0703 49 1 5.6288 5.8556 -0.7450 50 1 2.6680 2.1975 1.9362 51 1 3.3274 0.5288 1.6464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:47 Heat of formation + Delta-G solvation = -47.462622 kcal Electronic energy + Delta-G solvation = -30739.705931 eV Core-core repulsion = 26641.997017 eV Total energy + Delta-G solvation = -4097.708914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21699 -40.19110 -38.62017 -36.70374 -35.14905 -34.23012 -33.41176 -32.42829 -30.64345 -29.40086 -27.69625 -27.58973 -27.54963 -26.46776 -25.19524 -23.09016 -21.49764 -21.16106 -19.65970 -19.34987 -18.49026 -17.74525 -17.34235 -16.83709 -16.57737 -15.95684 -15.79372 -15.50445 -15.25229 -14.67075 -14.36955 -14.35411 -14.05197 -13.86096 -13.45844 -13.16477 -12.97507 -12.68334 -12.65487 -12.50631 -12.29606 -12.27605 -12.20194 -12.10302 -12.06375 -11.86154 -11.76186 -11.60010 -11.31167 -11.28982 -11.01362 -10.82948 -10.67882 -10.50152 -10.20273 -10.05379 -9.78233 -9.43917 -9.24334 -8.93382 -8.78682 -8.64331 -8.09682 -6.22323 -4.24900 1.87915 2.46047 2.77348 3.20348 3.23075 3.33962 3.37864 3.59425 3.85359 4.29951 4.42367 4.53191 4.56118 4.59708 4.70922 4.72910 4.92617 5.06794 5.12548 5.22938 5.27361 5.34753 5.35786 5.41706 5.48694 5.50385 5.53552 5.58184 5.60549 5.66436 5.66960 5.74767 5.81698 5.84130 6.08361 6.14652 6.18042 6.29230 6.36124 6.39287 6.54647 6.74276 6.83772 6.97359 7.18045 7.28891 7.51251 7.55018 8.13957 8.24333 8.52097 8.75060 8.93274 9.38616 10.89976 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002947 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.434234 B = 9500.452836 C =10915.186284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C -0.041 4.041 4 C -0.123 4.123 5 C 0.501 3.499 6 O -0.541 6.541 7 N -0.704 5.704 8 C 0.238 3.762 9 H 0.048 0.952 10 C -0.161 4.161 11 C -0.536 4.536 12 H 0.079 0.921 13 C 0.078 3.922 14 N -0.893 5.893 15 Si 0.886 3.114 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.262 1.262 19 C 0.126 3.874 20 N -0.634 5.634 21 C 0.674 3.326 22 O -0.573 6.573 23 O -0.360 6.360 24 C 0.135 3.865 25 C -0.182 4.182 26 C -0.141 4.141 27 C -0.184 4.184 28 C 0.145 3.855 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.394 0.606 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.267 0.733 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.087 0.913 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.572 -6.794 12.940 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.164 4.164 3 C -0.043 4.043 4 C -0.163 4.163 5 C 0.286 3.714 6 O -0.420 6.420 7 N -0.352 5.352 8 C 0.135 3.865 9 H 0.066 0.934 10 C -0.219 4.219 11 C -0.573 4.573 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.186 1.186 19 C 0.004 3.996 20 N -0.376 5.376 21 C 0.430 3.570 22 O -0.463 6.463 23 O -0.274 6.274 24 C 0.098 3.902 25 C -0.239 4.239 26 C -0.198 4.198 27 C -0.241 4.241 28 C 0.024 3.976 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.227 0.773 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.886 -7.084 12.636 22.249 hybrid contribution -0.411 -0.216 -0.373 0.595 sum 16.476 -7.300 12.263 21.797 Atomic orbital electron populations 1.23791 0.95983 1.01470 0.96821 1.22125 0.95528 0.95249 1.03511 1.21036 0.93355 0.94441 0.95421 1.21506 0.98340 0.98174 0.98324 1.20225 0.80828 0.84361 0.85956 1.90722 1.68522 1.25742 1.57019 1.46232 1.39259 1.19033 1.30687 1.19060 0.87456 0.96659 0.83327 0.93418 1.22448 0.99883 0.98975 1.00568 1.21061 1.32895 0.91548 1.11845 0.90284 1.24841 0.95167 0.96332 0.96251 1.69869 1.36284 1.24804 1.22024 0.86866 0.79675 0.84214 0.77643 1.20358 1.22214 1.18643 1.23355 0.87684 0.96563 0.91990 1.48795 1.28954 1.46009 1.13878 1.17518 0.78400 0.78743 0.82293 1.90879 1.69571 1.57256 1.28605 1.86346 1.43024 1.62666 1.35409 1.22074 0.83232 0.88028 0.96834 1.22506 0.98905 1.01082 1.01419 1.21863 1.00498 1.02743 0.94740 1.22523 1.02351 0.95573 1.03659 1.23296 0.83149 0.98284 0.92890 0.88850 0.88818 0.87189 0.88522 0.88829 0.77289 0.94484 0.92936 0.93562 0.92294 0.89149 0.89276 0.92300 0.91200 0.89488 0.91237 0.90181 0.91536 0.89426 0.91222 0.91947 0.89432 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 11.83 29.01 0.34 -1.47 16 2 C -0.15 -1.65 8.18 -36.03 -0.29 -1.94 16 3 C -0.04 -0.46 0.76 -154.73 -0.12 -0.58 16 4 C -0.12 -1.51 4.51 -27.88 -0.13 -1.64 16 5 C 0.50 8.38 5.82 -10.98 -0.06 8.32 16 6 O -0.54 -10.48 12.77 5.56 0.07 -10.41 16 7 N -0.70 -13.11 5.07 -54.93 -0.28 -13.38 16 8 C 0.24 5.47 2.15 -69.08 -0.15 5.32 16 9 H 0.05 1.22 6.64 -51.93 -0.34 0.87 16 10 C -0.16 -3.45 8.96 37.16 0.33 -3.12 16 11 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 12 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 13 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 14 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 15 Si 0.89 21.52 24.37 -169.99 -4.14 17.38 16 16 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 19 C 0.13 1.48 7.91 -2.84 -0.02 1.46 16 20 N -0.63 -7.75 3.47 -183.69 -0.64 -8.39 16 21 C 0.67 9.46 8.22 54.06 0.44 9.90 16 22 O -0.57 -8.85 12.61 -19.27 -0.24 -9.10 16 23 O -0.36 -4.83 9.87 -40.34 -0.40 -5.23 16 24 C 0.14 1.47 1.13 -90.62 -0.10 1.37 16 25 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 26 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 27 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 28 C 0.14 1.42 7.97 -2.97 -0.02 1.40 16 29 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.09 1.29 5.15 -52.49 -0.27 1.02 16 31 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.10 0.98 7.84 -51.93 -0.41 0.58 16 33 H 0.09 1.15 8.00 -51.93 -0.42 0.74 16 34 H 0.39 6.56 8.54 -40.82 -0.35 6.22 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.05 5.88 -51.92 -0.31 0.75 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 51 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -32.28 399.69 -6.58 -38.86 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.50 Total: 7.28 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 0.76 Total: 2.49 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.14 Total: -47.29 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.57 Total: -24.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.28 -6.58 -38.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.603 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds