Wall clock time and date at job start Tue Mar 31 2020 21:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.53004 * 112.94366 * 350.05434 * 3 2 1 5 5 C 1.50705 * 109.46870 * 309.66761 * 4 3 2 6 6 O 1.21280 * 120.00256 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99329 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99417 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47350 * 325.00144 * 8 7 5 10 10 C 1.53002 * 109.46904 * 85.00381 * 8 7 5 11 11 C 1.50706 * 109.47189 * 204.99893 * 8 7 5 12 12 H 1.07996 * 119.99625 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00165 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00101 * 180.02562 * 13 11 8 15 15 Si 1.86801 * 119.99759 * 359.97438 * 13 11 8 16 16 H 1.48499 * 109.46967 * 90.00524 * 15 13 11 17 17 H 1.48507 * 109.47025 * 209.99990 * 15 13 11 18 18 H 1.48492 * 109.47374 * 330.00181 * 15 13 11 19 19 C 1.53946 * 113.73854 * 218.46268 * 3 2 1 20 20 N 1.47812 * 86.03249 * 222.08407 * 19 3 2 21 21 C 1.34778 * 134.45561 * 204.64583 * 20 19 3 22 22 O 1.21503 * 120.00285 * 179.86773 * 21 20 19 23 23 O 1.34646 * 119.99893 * 359.86595 * 21 20 19 24 24 C 1.45199 * 116.99983 * 180.02562 * 23 21 20 25 25 C 1.52996 * 109.47253 * 60.00172 * 24 23 21 26 26 C 1.53003 * 109.46964 * 180.02562 * 24 23 21 27 27 C 1.53001 * 109.46984 * 300.00124 * 24 23 21 28 28 C 1.47580 * 91.05302 * 24.55063 * 20 19 3 29 29 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 30 30 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 31 31 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 32 32 H 1.08997 * 109.46814 * 69.66553 * 4 3 2 33 33 H 1.08999 * 109.47096 * 189.67055 * 4 3 2 34 34 H 0.96996 * 120.00379 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.46893 * 299.99571 * 10 8 7 36 36 H 1.09001 * 109.47310 * 59.99739 * 10 8 7 37 37 H 1.09001 * 109.46962 * 179.97438 * 10 8 7 38 38 H 0.96996 * 119.99994 * 179.97438 * 14 13 11 39 39 H 1.08997 * 113.77152 * 336.34703 * 19 3 2 40 40 H 1.09002 * 113.77030 * 107.74644 * 19 3 2 41 41 H 1.08997 * 109.47194 * 59.99642 * 25 24 23 42 42 H 1.09002 * 109.47447 * 180.02562 * 25 24 23 43 43 H 1.09008 * 109.46828 * 299.99663 * 25 24 23 44 44 H 1.09002 * 109.47031 * 59.99754 * 26 24 23 45 45 H 1.09002 * 109.46628 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.46832 * 299.99959 * 26 24 23 47 47 H 1.08999 * 109.47535 * 59.99793 * 27 24 23 48 48 H 1.09001 * 109.46942 * 180.02562 * 27 24 23 49 49 H 1.09004 * 109.46956 * 299.99555 * 27 24 23 50 50 H 1.09001 * 113.76462 * 221.15053 * 28 20 19 51 51 H 1.08994 * 113.86865 * 89.76796 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.1599 2.5156 -0.2434 5 6 0.3076 2.2693 -1.4616 6 8 0.4123 1.2280 -2.0745 7 7 -0.5709 3.2063 -1.8699 8 6 -1.3991 2.9671 -3.0545 9 1 -0.8293 2.3948 -3.7867 10 6 -2.6486 2.1807 -2.6529 11 6 -1.8080 4.2868 -3.6564 12 1 -1.4832 5.2112 -3.2021 13 6 -2.5969 4.3141 -4.7868 14 7 -2.9533 5.4658 -5.3123 15 14 -3.1581 2.7151 -5.5728 16 1 -4.4549 2.3006 -4.9799 17 1 -3.3235 2.9138 -7.0352 18 1 -2.1422 1.6601 -5.3284 19 6 3.3290 1.2901 -0.8765 20 7 3.9794 2.0238 0.2296 21 6 5.0313 2.8620 0.3164 22 8 5.3469 3.3314 1.3918 23 8 5.7323 3.1793 -0.7885 24 6 6.8528 4.0873 -0.6201 25 6 7.8663 3.4728 0.3474 26 6 7.5218 4.3285 -1.9748 27 6 6.3508 5.4177 -0.0556 28 6 3.0137 1.4722 1.1996 29 1 -0.5400 -0.9353 0.0045 30 1 -0.5400 0.9353 -0.0045 31 1 1.8500 -0.9353 0.0046 32 1 0.5180 2.6699 0.6240 33 1 1.7744 3.4015 -0.4030 34 1 -0.6549 4.0389 -1.3795 35 1 -2.3528 1.2261 -2.2176 36 1 -3.2183 2.7529 -1.9207 37 1 -3.2650 2.0031 -3.5342 38 1 -3.5080 5.4849 -6.1078 39 1 3.7370 0.2930 -1.0421 40 1 3.2345 1.8703 -1.7945 41 1 8.2239 2.5249 -0.0547 42 1 8.7073 4.1545 0.4742 43 1 7.3894 3.3013 1.3125 44 1 6.7995 4.7665 -2.6638 45 1 8.3632 5.0098 -1.8483 46 1 7.8793 3.3808 -2.3773 47 1 5.8739 5.2463 0.9094 48 1 7.1919 6.0995 0.0703 49 1 5.6288 5.8556 -0.7450 50 1 2.6680 2.1975 1.9362 51 1 3.3274 0.5288 1.6464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931157439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:46 Heat of formation + Delta-G solvation = -69.046459 kcal Electronic energy + Delta-G solvation = -30740.641877 eV Core-core repulsion = 26641.997017 eV Total energy + Delta-G solvation = -4098.644859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.20831 -41.25589 -39.87520 -37.72174 -36.79665 -35.16827 -34.47185 -34.29178 -32.17699 -30.56317 -28.80505 -28.36811 -28.31773 -27.33565 -27.18777 -24.13861 -23.05680 -22.07944 -21.21014 -20.28737 -19.60814 -18.90269 -18.70507 -17.85059 -17.77158 -17.42772 -17.17622 -16.80069 -16.29438 -15.82739 -15.62430 -15.31641 -15.14549 -15.10708 -14.73614 -14.62357 -14.24838 -14.08633 -13.79414 -13.63900 -13.49154 -13.36378 -13.17575 -13.07151 -13.04183 -12.92257 -12.87765 -12.76074 -12.67616 -12.47223 -12.20084 -12.12002 -11.99195 -11.62840 -11.58724 -11.39747 -11.24473 -11.03678 -10.88539 -10.76288 -9.93682 -9.84996 -9.53651 -8.37314 -6.43109 0.99144 1.28213 1.36327 1.45755 1.54575 1.74571 1.87711 2.26883 2.47843 2.73283 2.99408 3.47122 3.61576 3.72196 3.76383 3.79298 3.93204 3.93855 4.22622 4.31124 4.47237 4.50194 4.52245 4.53666 4.59430 4.60778 4.63564 4.64121 4.65259 4.72912 4.75214 4.77366 4.81618 4.86034 4.90131 4.95603 5.05248 5.10470 5.26466 5.27348 5.31317 5.36730 5.48261 5.48495 5.71587 5.83640 6.06693 6.16102 6.57436 6.59573 6.95573 7.21090 7.23636 7.54088 8.78253 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002947 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.434234 B = 9500.452836 C =10915.186284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.040 4.040 4 C -0.114 4.114 5 C 0.504 3.496 6 O -0.565 6.565 7 N -0.709 5.709 8 C 0.246 3.754 9 H 0.023 0.977 10 C -0.153 4.153 11 C -0.534 4.534 12 H 0.052 0.948 13 C 0.026 3.974 14 N -0.937 5.937 15 Si 0.942 3.058 16 H -0.260 1.260 17 H -0.295 1.295 18 H -0.259 1.259 19 C 0.125 3.875 20 N -0.636 5.636 21 C 0.666 3.334 22 O -0.592 6.592 23 O -0.373 6.373 24 C 0.122 3.878 25 C -0.175 4.175 26 C -0.137 4.137 27 C -0.179 4.179 28 C 0.152 3.848 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.054 0.946 50 H 0.095 0.905 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.634 -8.408 14.066 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.041 4.041 4 C -0.153 4.153 5 C 0.291 3.709 6 O -0.445 6.445 7 N -0.358 5.358 8 C 0.141 3.859 9 H 0.041 0.959 10 C -0.212 4.212 11 C -0.572 4.572 12 H 0.070 0.930 13 C -0.173 4.173 14 N -0.576 5.576 15 Si 0.769 3.231 16 H -0.186 1.186 17 H -0.223 1.223 18 H -0.183 1.183 19 C 0.003 3.997 20 N -0.379 5.379 21 C 0.423 3.577 22 O -0.484 6.484 23 O -0.288 6.288 24 C 0.086 3.914 25 C -0.232 4.232 26 C -0.194 4.194 27 C -0.237 4.237 28 C 0.032 3.968 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.238 0.762 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.114 0.886 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.953 -8.707 13.791 24.256 hybrid contribution -0.653 0.347 -0.701 1.019 sum 17.300 -8.360 13.090 23.249 Atomic orbital electron populations 1.23803 0.96547 1.01201 0.98520 1.22303 0.95230 0.95915 1.01855 1.20996 0.92956 0.93941 0.96199 1.21479 0.98118 0.98878 0.96873 1.20873 0.80132 0.83306 0.86601 1.90706 1.69031 1.26672 1.58063 1.46105 1.39691 1.20197 1.29822 1.18673 0.88394 0.94360 0.84463 0.95889 1.22325 0.98830 0.99557 1.00442 1.21328 1.31921 0.92343 1.11630 0.92960 1.25600 0.95578 0.99168 0.96982 1.69989 1.37746 1.26934 1.22926 0.85960 0.79910 0.80545 0.76656 1.18610 1.22283 1.18341 1.23415 0.88150 0.96979 0.91141 1.48960 1.28564 1.45577 1.14770 1.17726 0.78791 0.78973 0.82212 1.90867 1.70251 1.58071 1.29237 1.86350 1.43784 1.63208 1.35480 1.22436 0.82927 0.87653 0.98412 1.22436 0.99118 1.01825 0.99835 1.21892 1.00876 1.03477 0.93164 1.22476 1.02944 0.96148 1.02093 1.23451 0.81667 0.99546 0.92150 0.88196 0.90236 0.85100 0.85882 0.88770 0.76249 0.92962 0.91986 0.94448 0.92143 0.87323 0.91462 0.91987 0.88890 0.91795 0.91995 0.87639 0.91238 0.91690 0.88845 0.92717 0.88641 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 11.83 67.78 0.80 -2.99 16 2 C -0.13 -2.69 8.18 25.64 0.21 -2.48 16 3 C -0.04 -0.79 0.76 -52.27 -0.04 -0.83 16 4 C -0.11 -2.60 4.51 29.85 0.13 -2.47 16 5 C 0.50 16.34 5.82 87.66 0.51 16.85 16 6 O -0.56 -21.30 12.77 -3.03 -0.04 -21.34 16 7 N -0.71 -26.08 5.07 -446.07 -2.26 -28.34 16 8 C 0.25 11.24 2.15 44.25 0.10 11.33 16 9 H 0.02 1.18 6.64 -2.39 -0.02 1.16 16 10 C -0.15 -6.37 8.96 71.98 0.65 -5.73 16 11 C -0.53 -28.85 9.31 25.60 0.24 -28.61 16 12 H 0.05 3.03 7.98 -2.91 -0.02 3.01 16 13 C 0.03 1.47 5.45 84.65 0.46 1.93 16 14 N -0.94 -56.25 13.96 21.45 0.30 -55.95 16 15 Si 0.94 44.33 24.37 68.60 1.67 46.00 16 16 H -0.26 -11.50 6.87 99.48 0.68 -10.82 16 17 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 18 H -0.26 -11.97 6.53 99.48 0.65 -11.32 16 19 C 0.13 2.75 7.91 86.44 0.68 3.43 16 20 N -0.64 -14.63 3.47 -965.48 -3.35 -17.98 16 21 C 0.67 18.32 8.22 129.79 1.07 19.39 16 22 O -0.59 -18.13 12.61 19.83 0.25 -17.88 16 23 O -0.37 -9.90 9.87 -55.55 -0.55 -10.45 16 24 C 0.12 2.54 1.13 -10.79 -0.01 2.52 16 25 C -0.18 -3.26 8.37 71.98 0.60 -2.66 16 26 C -0.14 -2.12 8.85 71.98 0.64 -1.48 16 27 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 28 C 0.15 2.57 7.97 86.48 0.69 3.26 16 29 H 0.10 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.08 2.05 5.15 -2.91 -0.01 2.03 16 31 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.12 2.20 7.84 -2.39 -0.02 2.18 16 33 H 0.09 2.21 8.00 -2.39 -0.02 2.19 16 34 H 0.40 13.32 8.54 -92.71 -0.79 12.52 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.04 1.61 3.27 -2.39 -0.01 1.60 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.11 1.99 8.09 -2.39 -0.02 1.97 16 40 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.52 5.88 -2.38 -0.01 1.50 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.67 5.88 -2.39 -0.01 1.65 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 50 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 51 H 0.12 1.46 8.09 -2.39 -0.02 1.44 16 Total: -1.00 -70.79 399.69 3.40 -67.39 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.05 Total: 30.21 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.33 Total: 8.34 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -5.31 Total: -102.27 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.34 Total: -49.67 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.67 Total: 46.00 kcal Total: -70.79 3.40 -67.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.653 kcal (2) G-P(sol) polarization free energy of solvation -70.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds