Wall clock time and date at job start Tue Mar 31 2020 21:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46806 * 2 1 4 4 C 1.50698 * 109.47000 * 240.00025 * 2 1 3 5 5 H 1.07996 * 120.00240 * 239.99278 * 4 2 1 6 6 C 1.37884 * 119.99821 * 60.00003 * 4 2 1 7 7 N 1.31512 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99887 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47729 * 119.99601 * 8 6 4 11 11 H 1.48502 * 109.46936 * 239.99791 * 8 6 4 12 12 N 1.46497 * 109.47610 * 120.00054 * 2 1 3 13 13 C 1.34776 * 119.99746 * 275.00053 * 12 2 1 14 14 O 1.21609 * 120.00460 * 0.02562 * 13 12 2 15 15 C 1.47108 * 120.00029 * 179.97438 * 13 12 2 16 16 C 1.32027 * 119.68048 * 180.14645 * 15 13 12 17 17 C 1.51165 * 120.34217 * 180.10329 * 16 15 13 18 18 C 1.53271 * 108.84613 * 71.43154 * 17 16 15 19 19 N 1.46114 * 109.62099 * 279.07064 * 18 17 16 20 20 C 1.34774 * 118.71681 * 243.81543 * 19 18 17 21 21 O 1.21507 * 120.00513 * 179.97438 * 20 19 18 22 22 O 1.34646 * 119.99660 * 359.97438 * 20 19 18 23 23 C 1.45197 * 116.99798 * 180.02562 * 22 20 19 24 24 C 1.53003 * 109.46794 * 60.00647 * 23 22 20 25 25 C 1.52999 * 109.46968 * 180.02562 * 23 22 20 26 26 C 1.52994 * 109.47534 * 300.00513 * 23 22 20 27 27 C 1.46105 * 122.57042 * 63.78918 * 19 18 17 28 28 C 1.51160 * 119.73804 * 359.97438 * 15 13 12 29 29 H 1.09005 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46936 * 299.99446 * 1 2 3 31 31 H 1.08998 * 109.47741 * 60.00323 * 1 2 3 32 32 H 0.96998 * 120.00145 * 180.02562 * 7 6 4 33 33 H 0.96994 * 119.99969 * 94.99968 * 12 2 1 34 34 H 1.07997 * 119.92225 * 359.89031 * 16 15 13 35 35 H 1.09002 * 109.59490 * 311.58341 * 17 16 15 36 36 H 1.09003 * 109.59702 * 191.27897 * 17 16 15 37 37 H 1.08996 * 109.44602 * 39.11219 * 18 17 16 38 38 H 1.08996 * 109.44754 * 159.02617 * 18 17 16 39 39 H 1.09001 * 109.47482 * 59.99929 * 24 23 22 40 40 H 1.09007 * 109.46714 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47043 * 299.99171 * 24 23 22 42 42 H 1.09006 * 109.47111 * 60.00165 * 25 23 22 43 43 H 1.09007 * 109.47337 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.47318 * 300.00077 * 25 23 22 45 45 H 1.09000 * 109.47522 * 60.00082 * 26 23 22 46 46 H 1.08999 * 109.47531 * 180.02562 * 26 23 22 47 47 H 1.09001 * 109.47485 * 300.00118 * 26 23 22 48 48 H 1.08997 * 109.45074 * 56.25833 * 27 19 18 49 49 H 1.09004 * 109.44841 * 176.16514 * 27 19 18 50 50 H 1.08997 * 109.59664 * 348.64828 * 28 15 13 51 51 H 1.09005 * 109.59707 * 228.18243 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1660 -1.5867 -4.8161 11 1 3.1464 -0.1873 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0182 2.3570 14 8 1.8575 1.1616 2.4118 15 6 2.6371 -0.7117 3.5583 16 6 2.7581 -0.0476 4.6930 17 6 3.2622 -0.7449 5.9359 18 6 4.7590 -1.0305 5.7707 19 7 4.9426 -2.2347 4.9637 20 6 5.5254 -3.3104 5.5290 21 8 5.6892 -4.3242 4.8795 22 8 5.9263 -3.2616 6.8135 23 6 6.5467 -4.4569 7.3562 24 6 7.8008 -4.7929 6.5467 25 6 6.9319 -4.2133 8.8167 26 6 5.5608 -5.6241 7.2771 27 6 4.5185 -2.3184 3.5681 28 6 2.9939 -2.1787 3.4840 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 0.7080 1.1609 -3.4844 33 1 2.2492 -1.6317 1.1525 34 1 2.4991 1.0000 4.7342 35 1 2.7240 -1.6828 6.0726 36 1 3.1059 -0.1039 6.8035 37 1 5.2372 -0.1855 5.2754 38 1 5.2106 -1.1787 6.7515 39 1 8.5033 -3.9613 6.6030 40 1 8.2669 -5.6900 6.9544 41 1 7.5260 -4.9666 5.5063 42 1 6.0382 -3.9741 9.3931 43 1 7.3982 -5.1105 9.2240 44 1 7.6342 -3.3816 8.8734 45 1 5.2860 -5.7979 6.2368 46 1 6.0264 -6.5213 7.6849 47 1 4.6673 -5.3848 7.8538 48 1 4.9884 -1.5176 2.9972 49 1 4.8178 -3.2817 3.1549 50 1 2.6399 -2.5937 2.5404 51 1 2.5316 -2.7100 4.3160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:33 Heat of formation + Delta-G solvation = -105.130285 kcal Electronic energy + Delta-G solvation = -30487.259334 eV Core-core repulsion = 26387.049763 eV Total energy + Delta-G solvation = -4100.209571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17032 -39.53034 -38.25064 -36.68144 -34.89668 -34.55359 -33.54197 -32.73310 -31.93992 -28.94150 -27.72749 -27.65819 -27.63890 -25.28492 -25.03523 -23.78566 -21.91088 -21.43512 -19.85173 -19.49349 -18.46771 -18.12445 -17.03716 -16.76593 -16.52972 -15.84864 -15.55508 -15.44526 -14.89986 -14.73593 -14.58636 -14.20280 -14.09781 -13.77446 -13.68125 -13.46146 -13.02992 -12.77655 -12.47745 -12.46504 -12.29533 -12.23601 -12.18686 -11.90776 -11.80922 -11.73243 -11.64456 -11.55796 -11.42622 -11.07647 -10.96857 -10.86468 -10.73300 -10.62111 -10.29541 -10.23763 -10.11863 -9.41721 -9.08848 -9.01232 -8.68012 -8.55127 -7.89472 -6.12153 -4.21320 1.66591 1.95914 2.65363 3.24212 3.32165 3.35002 3.54224 3.91483 4.06583 4.36998 4.41532 4.46035 4.60162 4.63617 4.77872 4.92655 5.02376 5.10029 5.15345 5.17007 5.19260 5.20366 5.23361 5.30792 5.38259 5.43611 5.46887 5.53054 5.56711 5.67320 5.71525 5.72761 5.84458 6.00738 6.01702 6.06247 6.24441 6.29829 6.54121 6.71048 6.84348 6.97392 7.13555 7.15761 7.45834 7.57391 7.70444 7.92071 8.15240 8.15530 8.67114 8.78612 9.12504 9.46381 10.93884 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.002495 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.667832 B =11217.651481 C =12392.359506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.702 5.702 13 C 0.536 3.464 14 O -0.558 6.558 15 C -0.166 4.166 16 C -0.093 4.093 17 C -0.110 4.110 18 C 0.116 3.884 19 N -0.589 5.589 20 C 0.647 3.353 21 O -0.568 6.568 22 O -0.363 6.363 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.183 4.183 27 C 0.128 3.872 28 C -0.099 4.099 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.088 0.912 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.524 -10.087 22.853 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.323 3.677 14 O -0.439 6.439 15 C -0.169 4.169 16 C -0.112 4.112 17 C -0.148 4.148 18 C -0.006 4.006 19 N -0.329 5.329 20 C 0.402 3.598 21 O -0.457 6.457 22 O -0.278 6.278 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.240 4.240 27 C 0.007 3.993 28 C -0.137 4.137 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.147 0.853 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.124 0.876 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.310 -9.471 22.526 26.522 hybrid contribution 0.268 -0.832 -0.942 1.285 sum 10.578 -10.302 21.584 26.152 Atomic orbital electron populations 1.22075 0.98433 0.99116 1.00910 1.18765 0.91058 0.94012 0.80028 0.93339 1.21250 1.32358 1.13192 0.90294 0.92009 1.24893 0.94816 0.94956 0.99080 1.69912 1.35900 1.22506 1.23763 0.86398 0.78611 0.79557 0.82571 1.19680 1.20883 1.20891 1.46543 1.64392 1.13556 1.10535 1.18301 0.78875 0.86800 0.83758 1.90736 1.52019 1.15826 1.85282 1.21580 1.04025 0.96120 0.95161 1.23271 0.94743 1.00403 0.92823 1.21292 0.95645 1.01218 0.96634 1.21582 0.95887 0.87004 0.96161 1.46799 1.61297 1.12011 1.12785 1.18133 0.77386 0.83572 0.80672 1.90887 1.60522 1.30718 1.63577 1.86287 1.73190 1.42202 1.26147 1.22057 0.92480 0.82220 0.93395 1.22517 0.96379 1.02011 1.03161 1.21858 1.02387 1.02991 0.92511 1.22511 0.99028 0.97307 1.05199 1.21584 0.93919 1.04766 0.79003 1.21175 0.95647 0.93081 1.03796 0.95482 0.96663 0.89115 0.92638 0.77778 0.85332 0.90138 0.89531 0.90467 0.88430 0.92221 0.91234 0.89294 0.91477 0.90217 0.91501 0.89286 0.91243 0.92216 0.90141 0.87630 0.89360 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.70 -14.70 5.03 -56.12 -0.28 -14.98 16 13 C 0.54 10.80 7.71 -12.66 -0.10 10.70 16 14 O -0.56 -13.45 15.84 5.27 0.08 -13.36 16 15 C -0.17 -2.45 5.16 -102.72 -0.53 -2.98 16 16 C -0.09 -1.18 8.99 -36.00 -0.32 -1.51 16 17 C -0.11 -1.01 5.63 -27.52 -0.16 -1.16 16 18 C 0.12 1.06 6.10 -4.11 -0.03 1.04 16 19 N -0.59 -6.50 2.77 -179.74 -0.50 -7.00 16 20 C 0.65 7.79 7.65 54.05 0.41 8.20 16 21 O -0.57 -7.93 11.08 -19.28 -0.21 -8.15 16 22 O -0.36 -3.78 8.31 -40.34 -0.34 -4.12 16 23 C 0.14 1.16 1.13 -90.62 -0.10 1.06 16 24 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 25 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 26 C -0.18 -1.57 8.37 37.15 0.31 -1.26 16 27 C 0.13 1.51 6.08 -4.09 -0.02 1.48 16 28 C -0.10 -1.20 5.40 -27.49 -0.15 -1.35 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 7.05 6.31 -40.82 -0.26 6.79 16 34 H 0.13 1.80 7.44 -52.49 -0.39 1.41 16 35 H 0.08 0.77 7.05 -51.93 -0.37 0.40 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.71 7.95 -51.93 -0.41 0.29 16 38 H 0.10 0.77 6.68 -51.93 -0.35 0.43 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 49 H 0.11 1.28 6.77 -51.93 -0.35 0.93 16 50 H 0.09 1.07 5.97 -51.93 -0.31 0.76 16 51 H 0.08 0.93 7.05 -51.93 -0.37 0.57 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -32.04 396.54 -8.23 -40.27 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.30 Total: 7.07 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.27 Total: 2.93 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.15 Total: -46.29 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.47 Total: -25.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.04 -8.23 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.860 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds