Wall clock time and date at job start Tue Mar 31 2020 21:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46806 * 2 1 4 4 C 1.50698 * 109.47000 * 240.00025 * 2 1 3 5 5 H 1.07996 * 120.00240 * 239.99278 * 4 2 1 6 6 C 1.37884 * 119.99821 * 60.00003 * 4 2 1 7 7 N 1.31512 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99887 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47729 * 119.99601 * 8 6 4 11 11 H 1.48502 * 109.46936 * 239.99791 * 8 6 4 12 12 N 1.46497 * 109.47610 * 120.00054 * 2 1 3 13 13 C 1.34776 * 119.99746 * 275.00053 * 12 2 1 14 14 O 1.21609 * 120.00460 * 0.02562 * 13 12 2 15 15 C 1.47108 * 120.00029 * 179.97438 * 13 12 2 16 16 C 1.32027 * 119.68048 * 180.14645 * 15 13 12 17 17 C 1.51165 * 120.34217 * 180.10329 * 16 15 13 18 18 C 1.53271 * 108.84613 * 71.43154 * 17 16 15 19 19 N 1.46114 * 109.62099 * 279.07064 * 18 17 16 20 20 C 1.34774 * 118.71681 * 243.81543 * 19 18 17 21 21 O 1.21507 * 120.00513 * 179.97438 * 20 19 18 22 22 O 1.34646 * 119.99660 * 359.97438 * 20 19 18 23 23 C 1.45197 * 116.99798 * 180.02562 * 22 20 19 24 24 C 1.53003 * 109.46794 * 60.00647 * 23 22 20 25 25 C 1.52999 * 109.46968 * 180.02562 * 23 22 20 26 26 C 1.52994 * 109.47534 * 300.00513 * 23 22 20 27 27 C 1.46105 * 122.57042 * 63.78918 * 19 18 17 28 28 C 1.51160 * 119.73804 * 359.97438 * 15 13 12 29 29 H 1.09005 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46936 * 299.99446 * 1 2 3 31 31 H 1.08998 * 109.47741 * 60.00323 * 1 2 3 32 32 H 0.96998 * 120.00145 * 180.02562 * 7 6 4 33 33 H 0.96994 * 119.99969 * 94.99968 * 12 2 1 34 34 H 1.07997 * 119.92225 * 359.89031 * 16 15 13 35 35 H 1.09002 * 109.59490 * 311.58341 * 17 16 15 36 36 H 1.09003 * 109.59702 * 191.27897 * 17 16 15 37 37 H 1.08996 * 109.44602 * 39.11219 * 18 17 16 38 38 H 1.08996 * 109.44754 * 159.02617 * 18 17 16 39 39 H 1.09001 * 109.47482 * 59.99929 * 24 23 22 40 40 H 1.09007 * 109.46714 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47043 * 299.99171 * 24 23 22 42 42 H 1.09006 * 109.47111 * 60.00165 * 25 23 22 43 43 H 1.09007 * 109.47337 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.47318 * 300.00077 * 25 23 22 45 45 H 1.09000 * 109.47522 * 60.00082 * 26 23 22 46 46 H 1.08999 * 109.47531 * 180.02562 * 26 23 22 47 47 H 1.09001 * 109.47485 * 300.00118 * 26 23 22 48 48 H 1.08997 * 109.45074 * 56.25833 * 27 19 18 49 49 H 1.09004 * 109.44841 * 176.16514 * 27 19 18 50 50 H 1.08997 * 109.59664 * 348.64828 * 28 15 13 51 51 H 1.09005 * 109.59707 * 228.18243 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1660 -1.5867 -4.8161 11 1 3.1464 -0.1873 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0182 2.3570 14 8 1.8575 1.1616 2.4118 15 6 2.6371 -0.7117 3.5583 16 6 2.7581 -0.0476 4.6930 17 6 3.2622 -0.7449 5.9359 18 6 4.7590 -1.0305 5.7707 19 7 4.9426 -2.2347 4.9637 20 6 5.5254 -3.3104 5.5290 21 8 5.6892 -4.3242 4.8795 22 8 5.9263 -3.2616 6.8135 23 6 6.5467 -4.4569 7.3562 24 6 7.8008 -4.7929 6.5467 25 6 6.9319 -4.2133 8.8167 26 6 5.5608 -5.6241 7.2771 27 6 4.5185 -2.3184 3.5681 28 6 2.9939 -2.1787 3.4840 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 0.7080 1.1609 -3.4844 33 1 2.2492 -1.6317 1.1525 34 1 2.4991 1.0000 4.7342 35 1 2.7240 -1.6828 6.0726 36 1 3.1059 -0.1039 6.8035 37 1 5.2372 -0.1855 5.2754 38 1 5.2106 -1.1787 6.7515 39 1 8.5033 -3.9613 6.6030 40 1 8.2669 -5.6900 6.9544 41 1 7.5260 -4.9666 5.5063 42 1 6.0382 -3.9741 9.3931 43 1 7.3982 -5.1105 9.2240 44 1 7.6342 -3.3816 8.8734 45 1 5.2860 -5.7979 6.2368 46 1 6.0264 -6.5213 7.6849 47 1 4.6673 -5.3848 7.8538 48 1 4.9884 -1.5176 2.9972 49 1 4.8178 -3.2817 3.1549 50 1 2.6399 -2.5937 2.5404 51 1 2.5316 -2.7100 4.3160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931157979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:32 Heat of formation + Delta-G solvation = -124.754542 kcal Electronic energy + Delta-G solvation = -30488.110306 eV Core-core repulsion = 26387.049763 eV Total energy + Delta-G solvation = -4101.060543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02695 -40.90983 -39.34382 -37.63457 -36.76018 -35.47493 -34.50732 -34.34263 -33.15832 -30.81121 -28.69537 -28.30732 -28.23416 -27.36033 -26.09138 -24.72031 -23.50503 -22.24775 -21.57038 -20.36509 -19.87744 -19.09320 -18.31431 -17.73281 -17.53443 -17.42680 -17.12184 -16.39468 -16.23379 -15.86219 -15.68222 -15.43010 -15.19541 -15.05853 -14.52034 -14.46396 -14.41179 -14.16990 -13.72327 -13.39384 -13.24728 -13.09450 -13.01631 -12.93259 -12.90817 -12.84187 -12.79913 -12.73957 -12.63302 -12.40830 -12.32069 -12.28162 -12.20874 -12.11368 -11.86453 -11.33573 -11.11179 -10.98221 -10.76103 -10.60123 -10.46349 -9.81285 -9.58411 -8.18705 -6.36053 0.44784 1.15315 1.43563 1.44695 1.56837 1.76364 2.33739 2.39830 2.61699 2.80679 3.11858 3.65034 3.75413 3.81363 3.85860 4.00859 4.04188 4.10882 4.17938 4.24814 4.32845 4.37722 4.56050 4.64996 4.66989 4.71366 4.75991 4.79171 4.82542 4.87671 4.90281 4.93053 4.94227 5.00785 5.05816 5.08506 5.18024 5.33985 5.34673 5.40156 5.41477 5.48348 5.51725 5.59699 5.64930 5.70685 5.91302 6.08485 6.28236 6.71694 6.95224 7.28696 7.31083 7.52552 8.87952 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.002495 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.667832 B =11217.651481 C =12392.359506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.532 3.468 14 O -0.606 6.606 15 C -0.185 4.185 16 C -0.064 4.064 17 C -0.100 4.100 18 C 0.116 3.884 19 N -0.589 5.589 20 C 0.645 3.355 21 O -0.591 6.591 22 O -0.362 6.362 23 C 0.125 3.875 24 C -0.181 4.181 25 C -0.135 4.135 26 C -0.180 4.180 27 C 0.133 3.867 28 C -0.085 4.085 29 H 0.040 0.960 30 H 0.011 0.989 31 H 0.068 0.932 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -11.950 25.053 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.322 3.678 14 O -0.490 6.490 15 C -0.188 4.188 16 C -0.084 4.084 17 C -0.138 4.138 18 C -0.006 4.006 19 N -0.329 5.329 20 C 0.400 3.600 21 O -0.482 6.482 22 O -0.276 6.276 23 C 0.089 3.911 24 C -0.238 4.238 25 C -0.192 4.192 26 C -0.237 4.237 27 C 0.012 3.988 28 C -0.123 4.123 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.104 0.896 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.565 -11.364 24.764 29.600 hybrid contribution -0.094 -0.186 -1.522 1.536 sum 11.471 -11.550 23.243 28.376 Atomic orbital electron populations 1.21897 0.98284 0.99455 0.99571 1.18364 0.91153 0.91922 0.81977 0.98386 1.21553 1.32519 1.13504 0.90740 0.90902 1.25804 0.94877 0.95590 1.02328 1.70056 1.36976 1.23956 1.24563 0.85292 0.78113 0.78535 0.78379 1.18371 1.20377 1.20941 1.46293 1.64623 1.14178 1.09764 1.19119 0.77594 0.86350 0.84754 1.90704 1.54113 1.18080 1.86127 1.21300 1.06763 0.97431 0.93275 1.23574 0.91377 0.99793 0.93617 1.21350 0.95412 1.01604 0.95440 1.21710 0.95783 0.86233 0.96842 1.46852 1.61009 1.12447 1.12556 1.18263 0.77237 0.83356 0.81100 1.90887 1.61366 1.31710 1.64270 1.86293 1.73080 1.43180 1.25061 1.22388 0.92165 0.81737 0.94821 1.22477 0.96670 1.03020 1.01607 1.21874 1.02819 1.04148 0.90334 1.22466 0.99451 0.98251 1.03516 1.21447 0.93567 1.04195 0.79639 1.21078 0.95854 0.91122 1.04262 0.94098 0.97004 0.91365 0.92526 0.76026 0.86657 0.89514 0.86449 0.90396 0.86457 0.92035 0.89316 0.92127 0.90970 0.88273 0.91147 0.92066 0.89385 0.91831 0.90843 0.88117 0.89556 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 14.29 2.56 44.25 0.11 14.40 16 3 H 0.00 -0.11 7.58 -2.38 -0.02 -0.13 16 4 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 8 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 9 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.70 -29.96 5.03 -449.71 -2.26 -32.22 16 13 C 0.53 21.97 7.71 86.57 0.67 22.64 16 14 O -0.61 -30.49 15.84 -4.06 -0.06 -30.55 16 15 C -0.18 -5.35 5.16 -18.31 -0.09 -5.44 16 16 C -0.06 -1.53 8.99 24.91 0.22 -1.31 16 17 C -0.10 -1.52 5.63 30.09 0.17 -1.35 16 18 C 0.12 1.80 6.10 86.54 0.53 2.33 16 19 N -0.59 -11.99 2.77 -952.99 -2.64 -14.63 16 20 C 0.65 14.63 7.65 129.79 0.99 15.62 16 21 O -0.59 -16.30 11.08 19.82 0.22 -16.08 16 22 O -0.36 -6.75 8.31 -55.56 -0.46 -7.21 16 23 C 0.13 1.88 1.13 -10.79 -0.01 1.87 16 24 C -0.18 -2.85 8.37 71.98 0.60 -2.25 16 25 C -0.13 -1.16 8.85 71.98 0.64 -0.52 16 26 C -0.18 -2.76 8.37 71.98 0.60 -2.16 16 27 C 0.13 3.01 6.08 86.56 0.53 3.54 16 28 C -0.08 -1.97 5.40 30.10 0.16 -1.80 16 29 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.40 14.68 6.31 -92.71 -0.58 14.09 16 34 H 0.12 3.15 7.44 -2.91 -0.02 3.12 16 35 H 0.09 1.33 7.05 -2.39 -0.02 1.31 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.24 7.95 -2.39 -0.02 1.22 16 38 H 0.12 1.44 6.68 -2.39 -0.02 1.42 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 42 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 46 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 1.76 7.94 -2.39 -0.02 1.74 16 49 H 0.10 2.40 6.77 -2.38 -0.02 2.39 16 50 H 0.09 2.02 5.97 -2.39 -0.01 2.01 16 51 H 0.09 1.96 7.05 -2.38 -0.02 1.95 16 Total: -1.00 -72.40 396.54 3.87 -68.53 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.35 Total: 29.02 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.46 Total: 11.52 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -4.66 Total: -99.71 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.31 Total: -53.84 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.40 3.87 -68.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.222 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds