Wall clock time and date at job start Tue Mar 31 2020 21:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47487 * 2 1 4 4 C 1.53005 * 109.46881 * 119.99925 * 2 1 3 5 5 C 1.50697 * 109.47159 * 295.00008 * 4 2 1 6 6 O 1.21281 * 119.99743 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00170 * 179.97438 * 5 4 2 8 8 C 1.47133 * 121.06172 * 359.97438 * 7 5 4 9 9 C 1.53218 * 108.73326 * 127.72371 * 8 7 5 10 10 O 1.43121 * 109.35461 * 54.19415 * 9 8 7 11 11 C 1.42354 * 113.98995 * 300.22826 * 10 9 8 12 12 C 1.52925 * 114.29529 * 285.04254 * 11 10 9 13 13 N 1.47160 * 87.84673 * 271.72247 * 12 11 10 14 14 C 1.36943 * 135.99667 * 153.32361 * 13 12 11 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27694 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48496 * 109.47031 * 59.99836 * 18 16 14 20 20 H 1.48497 * 109.47267 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47169 * 300.00118 * 18 16 14 22 22 C 1.47173 * 88.00082 * 333.58089 * 13 12 11 23 23 C 1.47363 * 121.06208 * 179.97438 * 7 5 4 24 24 C 1.53000 * 109.47114 * 239.99488 * 2 1 3 25 25 H 1.09000 * 110.27876 * 300.64393 * 24 2 1 26 26 C 1.54956 * 110.30710 * 62.83975 * 24 2 1 27 27 C 1.55304 * 100.94110 * 155.35666 * 26 24 2 28 28 C 1.54384 * 102.25422 * 325.86840 * 27 26 24 29 29 O 1.43236 * 107.58811 * 21.35262 * 28 27 26 30 30 H 1.08997 * 109.47427 * 300.00349 * 1 2 3 31 31 H 1.09008 * 109.47159 * 60.00260 * 1 2 3 32 32 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46895 * 174.99715 * 4 2 1 34 34 H 1.08996 * 109.46584 * 55.00036 * 4 2 1 35 35 H 1.09003 * 109.59435 * 247.50187 * 8 7 5 36 36 H 1.09005 * 109.59520 * 7.79587 * 8 7 5 37 37 H 1.08995 * 109.49561 * 174.16111 * 9 8 7 38 38 H 1.08998 * 109.49161 * 294.21175 * 9 8 7 39 39 H 1.09003 * 113.48916 * 156.97825 * 12 11 10 40 40 H 1.08994 * 113.54511 * 26.48067 * 12 11 10 41 41 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.48906 * 141.17185 * 22 13 12 43 43 H 1.09002 * 113.49064 * 271.67217 * 22 13 12 44 44 H 1.09004 * 109.74248 * 108.59112 * 23 7 5 45 45 H 1.08997 * 109.78683 * 347.89458 * 23 7 5 46 46 H 1.09002 * 111.11920 * 273.27414 * 26 24 2 47 47 H 1.08993 * 111.12307 * 37.43788 * 26 24 2 48 48 H 1.08992 * 110.84652 * 207.67409 * 27 26 24 49 49 H 1.08999 * 111.02128 * 84.13449 * 27 26 24 50 50 H 1.09005 * 109.82938 * 261.84213 * 28 27 26 51 51 H 1.08998 * 109.83208 * 140.87403 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9843 -0.3919 3.7002 8 6 2.7473 -1.6391 3.8649 9 6 3.9701 -1.3555 4.7434 10 8 3.5439 -0.7516 5.9689 11 6 2.8486 0.4786 5.7968 12 6 3.7459 1.6637 5.4377 13 7 3.9250 1.8938 6.8801 14 6 4.8883 2.4540 7.6761 15 1 5.7857 2.8602 7.2332 16 6 4.7141 2.4941 9.0526 17 7 3.6207 1.9987 9.5924 18 14 6.0316 3.2513 10.1391 19 1 6.2280 4.6737 9.7606 20 1 5.6075 3.1717 11.5600 21 1 7.3064 2.5110 9.9602 22 6 2.6178 1.2520 7.0924 23 6 1.6071 0.3507 4.9159 24 6 2.0400 -0.7214 -1.2492 25 1 1.6746 -1.7481 -1.2682 26 6 1.5938 0.0342 -2.5263 27 6 2.6825 -0.4232 -3.5350 28 6 3.9301 -0.5517 -2.6346 29 8 3.4759 -0.7023 -1.2846 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 3.1263 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2951 35 1 2.1198 -2.3910 4.3434 36 1 3.0714 -2.0009 2.8890 37 1 4.4876 -2.2902 4.9593 38 1 4.6451 -0.6787 4.2196 39 1 3.2172 2.4712 4.9312 40 1 4.6643 1.3752 4.9264 41 1 3.4988 2.0271 10.5542 42 1 2.5848 0.6154 7.9767 43 1 1.7792 1.9464 7.0405 44 1 0.8292 -0.1923 5.4526 45 1 1.2440 1.3421 4.6449 46 1 0.6023 -0.2864 -2.8462 47 1 1.6262 1.1132 -2.3759 48 1 2.8372 0.3304 -4.3070 49 1 2.4245 -1.3844 -3.9796 50 1 4.5423 0.3461 -2.7208 51 1 4.5104 -1.4260 -2.9294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053517616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:04 Heat of formation + Delta-G solvation = -59.960175 kcal Electronic energy + Delta-G solvation = -30818.806367 eV Core-core repulsion = 26720.555518 eV Total energy + Delta-G solvation = -4098.250848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58957 -39.87552 -38.79977 -36.34254 -35.03593 -34.39580 -32.46088 -32.22970 -30.22703 -29.17458 -28.12531 -27.40073 -25.76763 -24.87810 -23.52713 -23.27206 -22.09050 -21.70122 -20.48557 -19.15568 -18.70645 -17.33561 -17.06066 -16.77766 -16.13233 -16.09573 -15.64756 -15.46715 -15.11826 -14.81102 -14.39947 -14.34984 -14.22015 -13.71221 -13.65065 -13.52864 -13.36797 -13.19158 -12.70198 -12.60165 -12.35585 -12.18960 -11.98466 -11.94146 -11.68246 -11.47836 -11.36437 -11.11560 -11.07411 -10.97649 -10.88614 -10.79832 -10.78728 -10.71732 -10.14336 -10.00105 -9.78149 -9.60997 -9.44648 -9.08123 -8.79090 -8.25408 -6.84514 -5.71791 -3.03633 2.71325 2.98754 3.44050 3.46870 3.47233 3.48937 4.09935 4.11834 4.27317 4.48369 4.51028 4.54793 4.70843 4.80332 4.90141 4.93672 4.98326 5.04942 5.12999 5.15217 5.25690 5.31065 5.32551 5.36133 5.38040 5.42973 5.45946 5.48242 5.55724 5.62509 5.65847 5.75378 5.77268 5.81140 5.88222 5.92440 6.08925 6.15092 6.23241 6.36187 6.43219 6.54469 6.62067 6.75689 6.98143 7.20296 7.47398 7.53476 7.86449 8.02151 8.25749 9.07561 9.74541 10.65950 11.46203 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.002403 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.807680 B =11648.828802 C =11974.163083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 H 0.085 0.915 4 C -0.133 4.133 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.612 5.612 8 C 0.073 3.927 9 C 0.044 3.956 10 O -0.332 6.332 11 C 0.047 3.953 12 C 0.102 3.898 13 N -0.600 5.600 14 C -0.215 4.215 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.175 3.825 23 C 0.103 3.897 24 C 0.085 3.915 25 H 0.071 0.929 26 C -0.150 4.150 27 C -0.158 4.158 28 C 0.051 3.949 29 O -0.379 6.379 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -10.757 -25.219 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.305 3.695 6 O -0.418 6.418 7 N -0.346 5.346 8 C -0.050 4.050 9 C -0.034 4.034 10 O -0.250 6.250 11 C 0.004 3.996 12 C -0.025 4.025 13 N -0.326 5.326 14 C -0.342 4.342 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.048 3.952 23 C -0.020 4.020 24 C 0.027 3.973 25 H 0.088 0.912 26 C -0.187 4.187 27 C -0.195 4.195 28 C -0.026 4.026 29 O -0.298 6.298 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.365 -10.186 -24.579 27.141 hybrid contribution 0.638 0.421 0.091 0.770 sum -4.726 -9.765 -24.487 26.783 Atomic orbital electron populations 1.21939 0.93779 1.01607 1.03585 1.21024 0.96375 1.00246 0.91423 0.89625 1.21697 1.03548 0.99730 0.92284 1.20645 0.79058 0.85586 0.84179 1.90650 1.40444 1.24612 1.86054 1.48262 1.55339 1.24779 1.06245 1.22445 0.94557 0.86490 1.01532 1.22873 0.94633 0.98805 0.87055 1.88033 1.74564 1.35302 1.27082 1.23284 0.91132 0.85069 1.00066 1.22870 0.96647 0.93866 0.89113 1.45339 1.17684 1.69717 0.99836 1.18838 0.96211 1.31686 0.87480 0.90206 1.24775 0.97825 1.01435 0.96331 1.69796 1.26233 1.50157 1.10516 0.86168 0.80823 0.78897 0.79670 1.21205 1.21521 1.21085 1.21936 0.88619 0.91485 0.93141 1.22141 0.97283 0.98458 0.84123 1.23075 0.80877 0.98521 0.94795 0.91152 1.23300 0.99346 1.01611 0.94489 1.23129 0.95288 1.02405 0.98714 1.23098 0.96296 1.01298 0.81907 1.88422 1.20510 1.94713 1.26192 0.89905 0.92705 0.93235 0.88176 0.89229 0.90542 0.89121 0.88083 0.92825 0.94177 0.94223 0.93561 0.89915 0.93959 0.90936 0.88043 0.89836 0.90021 0.90095 0.90625 0.91358 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.74 37.16 0.32 -1.10 16 2 C -0.07 -0.71 1.81 -90.62 -0.16 -0.88 16 3 H 0.09 1.04 7.95 -51.93 -0.41 0.62 16 4 C -0.13 -1.37 3.48 -27.88 -0.10 -1.47 16 5 C 0.52 7.23 7.43 -10.99 -0.08 7.15 16 6 O -0.54 -9.20 13.46 5.56 0.07 -9.13 16 7 N -0.61 -8.67 3.03 -172.49 -0.52 -9.19 16 8 C 0.07 0.83 6.50 -3.58 -0.02 0.81 16 9 C 0.04 0.63 6.90 37.27 0.26 0.88 16 10 O -0.33 -6.56 10.53 -35.23 -0.37 -6.93 16 11 C 0.05 0.93 1.27 -90.97 -0.12 0.81 16 12 C 0.10 2.26 7.91 -8.22 -0.06 2.20 16 13 N -0.60 -16.21 3.79 -184.97 -0.70 -16.92 16 14 C -0.21 -6.28 10.74 -15.06 -0.16 -6.44 16 15 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -27.96 11.52 55.49 0.64 -27.32 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.17 4.25 6.79 -8.36 -0.06 4.20 16 23 C 0.10 1.71 5.83 -3.69 -0.02 1.69 16 24 C 0.08 0.71 2.96 -25.70 -0.08 0.63 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 C -0.15 -1.00 5.55 -24.48 -0.14 -1.14 16 27 C -0.16 -0.90 7.02 -24.78 -0.17 -1.08 16 28 C 0.05 0.37 7.79 37.88 0.30 0.67 16 29 O -0.38 -3.81 10.39 -35.23 -0.37 -4.17 16 30 H 0.08 1.01 5.95 -51.93 -0.31 0.70 16 31 H 0.05 0.44 7.28 -51.92 -0.38 0.07 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 1.03 7.17 -51.93 -0.37 0.66 16 34 H 0.09 0.74 7.98 -51.93 -0.41 0.33 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.77 6.03 -51.93 -0.31 0.46 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.79 7.30 -51.93 -0.38 0.41 16 39 H 0.04 0.89 7.93 -51.93 -0.41 0.48 16 40 H 0.04 0.87 7.36 -51.93 -0.38 0.49 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 2.25 7.16 -51.93 -0.37 1.88 16 43 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 46 H 0.08 0.45 8.05 -51.93 -0.42 0.04 16 47 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -34.70 392.47 -9.46 -44.16 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.71 Total: -0.74 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.39 Total: 6.63 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.58 Total: -53.43 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.66 Total: -20.23 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.70 -9.46 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053517616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.801 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds