Wall clock time and date at job start Tue Mar 31 2020 21:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47418 * 2 1 4 4 C 1.53005 * 109.47022 * 239.99900 * 2 1 3 5 5 C 1.50697 * 109.47159 * 65.00000 * 4 2 1 6 6 O 1.21281 * 119.99743 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00170 * 179.97438 * 5 4 2 8 8 C 1.47133 * 121.06172 * 359.97438 * 7 5 4 9 9 C 1.53218 * 108.73326 * 127.72371 * 8 7 5 10 10 O 1.43121 * 109.35461 * 54.19415 * 9 8 7 11 11 C 1.42354 * 113.98995 * 300.22826 * 10 9 8 12 12 C 1.52925 * 114.29529 * 285.04254 * 11 10 9 13 13 N 1.47160 * 87.84673 * 271.72247 * 12 11 10 14 14 C 1.36943 * 135.99667 * 153.32361 * 13 12 11 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27694 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99811 * 18 16 14 22 22 C 1.47173 * 88.00082 * 333.58089 * 13 12 11 23 23 C 1.47363 * 121.06208 * 179.97438 * 7 5 4 24 24 C 1.52998 * 109.47187 * 119.99894 * 2 1 3 25 25 H 1.09008 * 109.86957 * 179.29748 * 24 2 1 26 26 C 1.54099 * 109.88223 * 300.30486 * 24 2 1 27 27 C 1.54807 * 104.18796 * 121.45169 * 26 24 2 28 28 C 1.54999 * 102.09098 * 20.88618 * 27 26 24 29 29 O 1.43745 * 109.88081 * 58.29140 * 24 2 1 30 30 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47175 * 299.99676 * 1 2 3 32 32 H 1.08998 * 109.47379 * 59.99869 * 1 2 3 33 33 H 1.09001 * 109.46895 * 304.99708 * 4 2 1 34 34 H 1.08996 * 109.46584 * 185.00029 * 4 2 1 35 35 H 1.09003 * 109.59435 * 247.50187 * 8 7 5 36 36 H 1.09005 * 109.59520 * 7.79587 * 8 7 5 37 37 H 1.08995 * 109.49561 * 174.16111 * 9 8 7 38 38 H 1.08998 * 109.49161 * 294.21175 * 9 8 7 39 39 H 1.09003 * 113.48916 * 156.97825 * 12 11 10 40 40 H 1.08994 * 113.54511 * 26.48067 * 12 11 10 41 41 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.48906 * 141.17185 * 22 13 12 43 43 H 1.09002 * 113.49064 * 271.67217 * 22 13 12 44 44 H 1.09004 * 109.74248 * 108.59112 * 23 7 5 45 45 H 1.08996 * 109.74582 * 347.87147 * 23 7 5 46 46 H 1.08996 * 110.49065 * 240.13264 * 26 24 2 47 47 H 1.09004 * 110.48276 * 2.77554 * 26 24 2 48 48 H 1.08998 * 110.90363 * 139.07770 * 27 26 24 49 49 H 1.08992 * 110.90935 * 262.65040 * 27 26 24 50 50 H 1.09001 * 110.62038 * 81.47718 * 28 27 26 51 51 H 1.09004 * 110.61386 * 204.46889 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0868 -2.3633 7 7 1.9853 -0.3914 -3.7001 8 6 2.7502 -1.6375 -3.8646 9 6 2.0123 -2.5403 -4.8585 10 8 1.7802 -1.8190 -6.0727 11 6 0.9985 -0.6411 -5.9057 12 6 -0.4925 -0.9012 -5.6872 13 7 -0.6543 -0.8774 -7.1497 14 6 -1.5242 -1.4265 -8.0536 15 1 -2.3343 -2.0535 -7.7112 16 6 -1.3612 -1.1823 -9.4103 17 7 -0.3737 -0.4187 -9.8275 18 14 -2.5432 -1.9376 -10.6438 19 1 -3.6831 -1.0125 -10.8675 20 1 -1.8357 -2.1711 -11.9284 21 1 -3.0505 -3.2297 -10.1162 22 6 0.5328 -0.0099 -7.2152 23 6 1.6072 0.3506 -4.9159 24 6 2.0400 -0.7212 1.2492 25 1 3.1300 -0.7359 1.2495 26 6 1.5253 -0.0066 2.5138 27 6 0.7286 -1.0983 3.2688 28 6 1.3136 -2.4016 2.6674 29 8 1.5331 -2.0660 1.2785 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6054 -1.7199 -1.2951 34 1 3.1262 -0.7995 -1.2055 35 1 3.7446 -1.4081 -4.2477 36 1 2.8368 -2.1430 -2.9028 37 1 2.6186 -3.4213 -5.0692 38 1 1.0586 -2.8491 -4.4307 39 1 -1.0063 -0.0846 -5.1799 40 1 -0.7043 -1.8735 -5.2424 41 1 -0.2601 -0.2478 -10.7755 42 1 1.1864 -0.2311 -8.0590 43 1 0.3007 1.0515 -7.1276 44 1 2.4912 0.8131 -5.3548 45 1 0.8748 1.1181 -4.6660 46 1 2.3602 0.3445 3.1201 47 1 0.8729 0.8238 2.2438 48 1 0.9171 -1.0458 4.3410 49 1 -0.3378 -1.0169 3.0588 50 1 2.2557 -2.6586 3.1517 51 1 0.5992 -3.2200 2.7568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053517617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:07 Heat of formation + Delta-G solvation = -57.269888 kcal Electronic energy + Delta-G solvation = -30959.254566 eV Core-core repulsion = 26861.120378 eV Total energy + Delta-G solvation = -4098.134189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.62066 -39.93503 -38.77968 -36.33949 -34.82294 -34.38457 -32.41767 -32.22848 -30.21325 -29.12759 -28.10398 -27.38372 -25.78894 -24.88301 -23.80634 -23.27609 -22.15966 -21.61507 -20.21878 -19.11579 -18.72577 -17.31598 -16.81356 -16.68020 -16.14241 -16.01412 -15.87918 -15.43709 -15.24057 -14.91022 -14.43888 -14.29384 -14.20077 -13.89202 -13.73526 -13.43629 -13.36571 -13.06400 -12.73218 -12.45039 -12.25951 -12.11676 -11.94279 -11.81768 -11.63067 -11.50789 -11.35344 -11.07655 -10.98847 -10.89233 -10.84338 -10.80942 -10.79418 -10.70972 -10.12160 -9.98582 -9.88891 -9.62034 -9.49610 -9.08260 -8.79782 -8.25324 -6.84950 -5.72389 -3.04203 2.71078 2.98664 3.43011 3.47096 3.49616 3.56280 4.09572 4.20641 4.30577 4.47862 4.54181 4.57348 4.69861 4.79278 4.90134 4.94787 4.96558 5.05495 5.12949 5.18286 5.25506 5.30876 5.33060 5.35903 5.40887 5.45054 5.46445 5.58148 5.63102 5.65806 5.71074 5.74513 5.79990 5.80830 5.91296 6.00067 6.09499 6.15520 6.33430 6.40612 6.45539 6.53929 6.61446 6.62895 6.97703 7.19969 7.47229 7.53238 7.86024 8.01661 8.25609 9.07068 9.74035 10.65345 11.45662 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002403 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.235194 B =11649.571517 C =11858.802098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 H 0.087 0.913 4 C -0.132 4.132 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.612 5.612 8 C 0.073 3.927 9 C 0.044 3.956 10 O -0.332 6.332 11 C 0.047 3.953 12 C 0.102 3.898 13 N -0.601 5.601 14 C -0.214 4.214 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.174 3.826 23 C 0.103 3.897 24 C 0.080 3.920 25 H 0.067 0.933 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.046 3.954 29 O -0.368 6.368 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.058 0.942 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -1.921 26.085 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.305 3.695 6 O -0.417 6.417 7 N -0.346 5.346 8 C -0.050 4.050 9 C -0.034 4.034 10 O -0.250 6.250 11 C 0.005 3.995 12 C -0.025 4.025 13 N -0.326 5.326 14 C -0.341 4.341 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.048 3.952 23 C -0.020 4.020 24 C 0.022 3.978 25 H 0.085 0.915 26 C -0.191 4.191 27 C -0.192 4.192 28 C -0.031 4.031 29 O -0.288 6.288 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.076 0.924 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.881 -1.649 25.422 26.979 hybrid contribution -0.577 -0.263 -0.205 0.666 sum 8.304 -1.912 25.217 26.618 Atomic orbital electron populations 1.21915 0.93964 1.02153 1.02728 1.21072 0.97688 0.98824 0.91401 0.89473 1.21691 1.02378 1.00792 0.92310 1.20664 0.79044 0.85616 0.84226 1.90653 1.40089 1.24911 1.86064 1.48266 1.55411 1.24744 1.06218 1.22446 0.95761 0.85705 1.01122 1.22872 0.99545 0.94414 0.86522 1.88033 1.71160 1.37319 1.28469 1.23282 0.90719 0.86447 0.99093 1.22868 0.92393 0.98664 0.88554 1.45350 1.32152 1.55535 0.99546 1.18884 1.05769 1.23541 0.85946 0.90153 1.24777 0.98806 1.00194 0.96622 1.69807 1.31705 1.41092 1.14069 0.86089 0.79943 0.78645 0.80896 1.21622 1.21586 1.20649 1.21938 0.88382 0.92753 0.92127 1.22143 1.01010 0.95226 0.83630 1.22822 0.97342 0.82617 0.94999 0.91545 1.23036 1.00536 0.99396 0.96166 1.23116 1.00969 0.94920 1.00229 1.23554 0.99702 0.97419 0.82413 1.88934 1.85829 1.29398 1.24596 0.92559 0.93129 0.90523 0.88257 0.89289 0.90547 0.89111 0.88087 0.92841 0.94183 0.94229 0.93612 0.89914 0.93956 0.90938 0.88047 0.90843 0.89753 0.90461 0.90420 0.92374 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.51 37.16 0.32 -1.37 16 2 C -0.07 -0.70 1.83 -90.62 -0.17 -0.87 16 3 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 4 C -0.13 -1.35 3.35 -27.88 -0.09 -1.45 16 5 C 0.52 7.18 7.43 -10.99 -0.08 7.10 16 6 O -0.54 -9.17 13.46 5.56 0.07 -9.10 16 7 N -0.61 -8.65 3.03 -172.49 -0.52 -9.17 16 8 C 0.07 0.83 6.50 -3.58 -0.02 0.81 16 9 C 0.04 0.63 6.90 37.27 0.26 0.88 16 10 O -0.33 -6.54 10.53 -35.23 -0.37 -6.91 16 11 C 0.05 0.93 1.27 -90.97 -0.12 0.81 16 12 C 0.10 2.25 7.91 -8.22 -0.06 2.19 16 13 N -0.60 -16.17 3.79 -184.97 -0.70 -16.87 16 14 C -0.21 -6.24 10.74 -15.06 -0.16 -6.40 16 15 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -27.92 11.52 55.49 0.64 -27.28 16 18 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 C 0.17 4.24 6.79 -8.36 -0.06 4.18 16 23 C 0.10 1.71 5.84 -3.69 -0.02 1.69 16 24 C 0.08 0.65 3.15 -26.16 -0.08 0.57 16 25 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 26 C -0.15 -1.03 6.15 -25.20 -0.15 -1.18 16 27 C -0.15 -0.93 7.16 -24.72 -0.18 -1.11 16 28 C 0.05 0.31 7.72 38.21 0.29 0.60 16 29 O -0.37 -3.47 10.00 -35.23 -0.35 -3.82 16 30 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 31 H 0.05 0.50 6.39 -51.93 -0.33 0.16 16 32 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16 33 H 0.10 1.02 7.45 -51.93 -0.39 0.63 16 34 H 0.09 0.73 7.98 -51.93 -0.41 0.32 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.77 6.03 -51.93 -0.31 0.46 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 39 H 0.04 0.88 7.93 -51.93 -0.41 0.47 16 40 H 0.04 0.86 7.36 -51.93 -0.38 0.48 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 2.25 7.16 -51.93 -0.37 1.88 16 43 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.10 1.79 6.89 -51.93 -0.36 1.43 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.60 6.22 -51.93 -0.32 0.27 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -34.55 389.74 -9.37 -43.93 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.56 Total: -0.47 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.43 Total: 6.15 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.58 Total: -53.32 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.65 Total: -19.83 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.55 -9.37 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053517617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.344 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds