Wall clock time and date at job start Tue Mar 31 2020 21:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47418 * 2 1 4 4 C 1.53005 * 109.47022 * 239.99900 * 2 1 3 5 5 C 1.50697 * 109.47159 * 65.00000 * 4 2 1 6 6 O 1.21281 * 119.99743 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00170 * 179.97438 * 5 4 2 8 8 C 1.47133 * 121.06172 * 359.97438 * 7 5 4 9 9 C 1.53218 * 108.73326 * 127.72371 * 8 7 5 10 10 O 1.43121 * 109.35461 * 54.19415 * 9 8 7 11 11 C 1.42354 * 113.98995 * 300.22826 * 10 9 8 12 12 C 1.52925 * 114.29529 * 285.04254 * 11 10 9 13 13 N 1.47160 * 87.84673 * 271.72247 * 12 11 10 14 14 C 1.36943 * 135.99667 * 153.32361 * 13 12 11 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27694 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99811 * 18 16 14 22 22 C 1.47173 * 88.00082 * 333.58089 * 13 12 11 23 23 C 1.47363 * 121.06208 * 179.97438 * 7 5 4 24 24 C 1.52998 * 109.47187 * 119.99894 * 2 1 3 25 25 H 1.09008 * 109.86957 * 179.29748 * 24 2 1 26 26 C 1.54099 * 109.88223 * 300.30486 * 24 2 1 27 27 C 1.54807 * 104.18796 * 121.45169 * 26 24 2 28 28 C 1.54999 * 102.09098 * 20.88618 * 27 26 24 29 29 O 1.43745 * 109.88081 * 58.29140 * 24 2 1 30 30 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47175 * 299.99676 * 1 2 3 32 32 H 1.08998 * 109.47379 * 59.99869 * 1 2 3 33 33 H 1.09001 * 109.46895 * 304.99708 * 4 2 1 34 34 H 1.08996 * 109.46584 * 185.00029 * 4 2 1 35 35 H 1.09003 * 109.59435 * 247.50187 * 8 7 5 36 36 H 1.09005 * 109.59520 * 7.79587 * 8 7 5 37 37 H 1.08995 * 109.49561 * 174.16111 * 9 8 7 38 38 H 1.08998 * 109.49161 * 294.21175 * 9 8 7 39 39 H 1.09003 * 113.48916 * 156.97825 * 12 11 10 40 40 H 1.08994 * 113.54511 * 26.48067 * 12 11 10 41 41 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.48906 * 141.17185 * 22 13 12 43 43 H 1.09002 * 113.49064 * 271.67217 * 22 13 12 44 44 H 1.09004 * 109.74248 * 108.59112 * 23 7 5 45 45 H 1.08996 * 109.74582 * 347.87147 * 23 7 5 46 46 H 1.08996 * 110.49065 * 240.13264 * 26 24 2 47 47 H 1.09004 * 110.48276 * 2.77554 * 26 24 2 48 48 H 1.08998 * 110.90363 * 139.07770 * 27 26 24 49 49 H 1.08992 * 110.90935 * 262.65040 * 27 26 24 50 50 H 1.09001 * 110.62038 * 81.47718 * 28 27 26 51 51 H 1.09004 * 110.61386 * 204.46889 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0868 -2.3633 7 7 1.9853 -0.3914 -3.7001 8 6 2.7502 -1.6375 -3.8646 9 6 2.0123 -2.5403 -4.8585 10 8 1.7802 -1.8190 -6.0727 11 6 0.9985 -0.6411 -5.9057 12 6 -0.4925 -0.9012 -5.6872 13 7 -0.6543 -0.8774 -7.1497 14 6 -1.5242 -1.4265 -8.0536 15 1 -2.3343 -2.0535 -7.7112 16 6 -1.3612 -1.1823 -9.4103 17 7 -0.3737 -0.4187 -9.8275 18 14 -2.5432 -1.9376 -10.6438 19 1 -3.6831 -1.0125 -10.8675 20 1 -1.8357 -2.1711 -11.9284 21 1 -3.0505 -3.2297 -10.1162 22 6 0.5328 -0.0099 -7.2152 23 6 1.6072 0.3506 -4.9159 24 6 2.0400 -0.7212 1.2492 25 1 3.1300 -0.7359 1.2495 26 6 1.5253 -0.0066 2.5138 27 6 0.7286 -1.0983 3.2688 28 6 1.3136 -2.4016 2.6674 29 8 1.5331 -2.0660 1.2785 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6054 -1.7199 -1.2951 34 1 3.1262 -0.7995 -1.2055 35 1 3.7446 -1.4081 -4.2477 36 1 2.8368 -2.1430 -2.9028 37 1 2.6186 -3.4213 -5.0692 38 1 1.0586 -2.8491 -4.4307 39 1 -1.0063 -0.0846 -5.1799 40 1 -0.7043 -1.8735 -5.2424 41 1 -0.2601 -0.2478 -10.7755 42 1 1.1864 -0.2311 -8.0590 43 1 0.3007 1.0515 -7.1276 44 1 2.4912 0.8131 -5.3548 45 1 0.8748 1.1181 -4.6660 46 1 2.3602 0.3445 3.1201 47 1 0.8729 0.8238 2.2438 48 1 0.9171 -1.0458 4.3410 49 1 -0.3378 -1.0169 3.0588 50 1 2.2557 -2.6586 3.1517 51 1 0.5992 -3.2200 2.7568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053517617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:06 Heat of formation + Delta-G solvation = -80.792214 kcal Electronic energy + Delta-G solvation = -30960.274571 eV Core-core repulsion = 26861.120378 eV Total energy + Delta-G solvation = -4099.154193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86112 -40.81953 -39.96824 -37.87655 -35.82443 -35.49757 -34.32085 -32.93969 -31.68450 -30.01171 -29.27520 -28.64863 -27.23428 -26.72668 -24.72570 -24.47790 -23.52444 -22.43341 -21.05027 -20.55583 -19.86524 -18.83272 -18.32409 -17.56561 -17.22219 -17.10300 -16.91174 -16.63717 -16.36893 -16.20955 -15.91928 -15.72777 -15.22334 -15.11353 -14.97142 -14.68741 -14.33304 -14.18238 -14.07681 -13.84060 -13.40202 -13.33607 -13.03530 -12.89103 -12.77271 -12.69363 -12.51158 -12.46406 -12.26509 -12.15120 -12.12140 -11.95406 -11.71412 -11.70103 -11.60638 -11.43108 -11.34052 -11.01527 -10.73772 -10.66373 -10.45465 -9.52862 -8.98025 -7.93734 -5.28196 1.43135 1.46590 1.55108 1.63702 1.88941 2.43868 2.67665 3.01834 3.26763 3.31853 3.42576 3.54110 3.71505 3.80844 3.83145 3.98926 4.07115 4.10121 4.13230 4.16009 4.27806 4.33884 4.42679 4.46711 4.53785 4.54412 4.65409 4.66283 4.70011 4.72846 4.77003 4.83433 4.85918 4.89995 4.94463 4.98375 5.01813 5.07466 5.11151 5.16730 5.20424 5.28552 5.34487 5.35332 5.42048 5.51540 5.85907 6.07315 6.36482 6.42117 6.85532 7.17196 7.54254 8.52862 9.24104 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002403 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.235194 B =11649.571517 C =11858.802098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.512 3.488 6 O -0.575 6.575 7 N -0.615 5.615 8 C 0.078 3.922 9 C 0.036 3.964 10 O -0.364 6.364 11 C 0.080 3.920 12 C 0.104 3.896 13 N -0.632 5.632 14 C -0.234 4.234 15 H 0.082 0.918 16 C -0.065 4.065 17 N -0.951 5.951 18 Si 0.985 3.015 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.268 1.268 22 C 0.169 3.831 23 C 0.113 3.887 24 C 0.083 3.917 25 H 0.083 0.917 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.041 3.959 29 O -0.390 6.390 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.251 0.749 42 H 0.048 0.952 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.727 -3.364 28.533 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 H 0.100 0.900 4 C -0.162 4.162 5 C 0.303 3.697 6 O -0.455 6.455 7 N -0.348 5.348 8 C -0.044 4.044 9 C -0.041 4.041 10 O -0.282 6.282 11 C 0.038 3.962 12 C -0.022 4.022 13 N -0.357 5.357 14 C -0.361 4.361 15 H 0.100 0.900 16 C -0.259 4.259 17 N -0.600 5.600 18 Si 0.812 3.188 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.193 1.193 22 C 0.043 3.957 23 C -0.011 4.011 24 C 0.025 3.975 25 H 0.100 0.900 26 C -0.192 4.192 27 C -0.190 4.190 28 C -0.035 4.035 29 O -0.310 6.310 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.113 0.887 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.283 -3.118 27.923 29.919 hybrid contribution -1.022 0.155 -0.897 1.369 sum 9.261 -2.962 27.027 28.722 Atomic orbital electron populations 1.21816 0.95403 1.01308 1.01605 1.21058 0.96415 0.98964 0.92453 0.90012 1.21729 1.04274 1.00096 0.90137 1.21387 0.78064 0.85377 0.84916 1.90648 1.41566 1.26754 1.86555 1.48358 1.55653 1.25481 1.05348 1.22627 0.95415 0.84056 1.02333 1.23248 1.00203 0.95431 0.85233 1.87971 1.70766 1.37441 1.32064 1.22697 0.89789 0.87076 0.96660 1.22953 0.94394 0.98700 0.86169 1.45709 1.32555 1.55986 1.01485 1.19276 1.06211 1.23677 0.86977 0.90000 1.25695 1.00711 1.01002 0.98453 1.70006 1.33417 1.42482 1.14060 0.84991 0.77630 0.78189 0.77954 1.21080 1.21625 1.19305 1.21883 0.87624 0.92679 0.93536 1.21793 1.00978 0.94070 0.84252 1.22821 0.98056 0.82243 0.94349 0.89956 1.23056 1.01074 0.99170 0.95911 1.23115 1.00308 0.94373 1.01228 1.23719 1.00613 0.97804 0.81413 1.88900 1.86078 1.29797 1.26204 0.93138 0.92206 0.93672 0.87630 0.86180 0.88763 0.85254 0.85102 0.93644 0.94029 0.93959 0.94035 0.93384 0.94327 0.89660 0.89465 0.89184 0.90556 0.88696 0.91323 0.90987 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 71.98 0.61 -2.56 16 2 C -0.07 -1.26 1.83 -10.79 -0.02 -1.28 16 3 H 0.08 1.57 7.96 -2.39 -0.02 1.56 16 4 C -0.12 -2.17 3.35 29.85 0.10 -2.07 16 5 C 0.51 13.47 7.43 87.66 0.65 14.12 16 6 O -0.58 -19.53 13.46 -3.03 -0.04 -19.57 16 7 N -0.61 -16.23 3.03 -818.04 -2.48 -18.71 16 8 C 0.08 1.50 6.50 86.33 0.56 2.06 16 9 C 0.04 0.92 6.90 72.05 0.50 1.42 16 10 O -0.36 -14.19 10.53 -148.98 -1.57 -15.75 16 11 C 0.08 3.22 1.27 -11.02 -0.01 3.21 16 12 C 0.10 4.69 7.91 83.31 0.66 5.35 16 13 N -0.63 -35.15 3.79 -740.00 -2.80 -37.95 16 14 C -0.23 -13.97 10.74 84.03 0.90 -13.07 16 15 H 0.08 4.70 7.83 -2.91 -0.02 4.67 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 17 N -0.95 -59.67 11.52 21.65 0.25 -59.42 16 18 Si 0.99 47.44 29.55 68.60 2.03 49.47 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 C 0.17 8.60 6.79 83.22 0.57 9.16 16 23 C 0.11 3.73 5.84 86.13 0.50 4.24 16 24 C 0.08 1.12 3.15 30.97 0.10 1.22 16 25 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 26 C -0.15 -1.68 6.15 31.58 0.19 -1.49 16 27 C -0.15 -1.48 7.16 31.89 0.23 -1.25 16 28 C 0.04 0.44 7.72 72.67 0.56 1.01 16 29 O -0.39 -6.31 10.00 -148.98 -1.49 -7.80 16 30 H 0.05 1.14 7.66 -2.38 -0.02 1.12 16 31 H 0.06 1.15 6.39 -2.39 -0.02 1.14 16 32 H 0.04 1.28 5.95 -2.39 -0.01 1.27 16 33 H 0.11 1.81 7.45 -2.39 -0.02 1.79 16 34 H 0.12 1.42 7.98 -2.39 -0.02 1.40 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.13 1.55 6.03 -2.38 -0.01 1.53 16 37 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.25 7.30 -2.39 -0.02 1.23 16 39 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 40 H 0.04 1.86 7.36 -2.39 -0.02 1.85 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.05 2.75 7.16 -2.39 -0.02 2.73 16 43 H 0.04 1.96 8.09 -2.39 -0.02 1.94 16 44 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 45 H 0.09 3.15 6.89 -2.39 -0.02 3.13 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.95 6.22 -2.39 -0.01 0.94 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -78.24 389.74 1.38 -76.87 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.91 Total: 16.24 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.57 Total: 16.64 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -5.03 Total: -116.08 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -3.10 Total: -43.13 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -78.24 1.38 -76.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053517617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.924 kcal (2) G-P(sol) polarization free energy of solvation -78.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds