Wall clock time and date at job start Tue Mar 31 2020 20:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46660 * 2 1 4 4 C 1.52997 * 109.46989 * 240.00625 * 2 1 3 5 5 C 1.52996 * 109.47816 * 64.99617 * 4 2 1 6 6 H 1.08998 * 109.82225 * 305.57025 * 5 4 2 7 7 C 1.54379 * 109.83427 * 184.58715 * 5 4 2 8 8 C 1.55301 * 102.25280 * 219.12993 * 7 5 4 9 9 C 1.54939 * 100.94293 * 34.13350 * 8 7 5 10 10 O 1.43239 * 109.82707 * 66.45189 * 5 4 2 11 11 C 1.50701 * 109.47325 * 120.00199 * 2 1 3 12 12 O 1.21278 * 119.99776 * 94.29159 * 11 2 1 13 13 N 1.34779 * 119.99819 * 274.29230 * 11 2 1 14 14 C 1.47126 * 121.05661 * 5.32395 * 13 11 2 15 15 C 1.53219 * 108.72725 * 127.77430 * 14 13 11 16 16 O 1.43105 * 109.34680 * 54.12538 * 15 14 13 17 17 C 1.42486 * 113.97844 * 300.04656 * 16 15 14 18 18 C 1.53459 * 113.76821 * 286.78976 * 17 16 15 19 19 N 1.47666 * 85.97362 * 268.72012 * 18 17 16 20 20 C 1.36933 * 134.45626 * 155.74540 * 19 18 17 21 21 H 1.08008 * 119.99661 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00388 * 359.95002 * 20 19 18 23 23 N 1.31616 * 119.99829 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99948 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47305 * 90.00164 * 24 22 20 26 26 H 1.48502 * 109.46856 * 209.99796 * 24 22 20 27 27 H 1.48491 * 109.47164 * 329.99596 * 24 22 20 28 28 C 1.47677 * 91.08492 * 335.70842 * 19 18 17 29 29 C 1.47336 * 121.05200 * 185.04355 * 13 11 2 30 30 H 1.09002 * 109.46862 * 174.66184 * 1 2 3 31 31 H 1.08997 * 109.47157 * 54.66652 * 1 2 3 32 32 H 1.08998 * 109.47103 * 294.65734 * 1 2 3 33 33 H 1.09005 * 109.47053 * 185.00163 * 4 2 1 34 34 H 1.09002 * 109.46976 * 304.98996 * 4 2 1 35 35 H 1.08999 * 110.84736 * 337.32458 * 7 5 4 36 36 H 1.09000 * 110.84905 * 100.94098 * 7 5 4 37 37 H 1.09002 * 111.12772 * 276.21245 * 8 7 5 38 38 H 1.09002 * 111.12391 * 152.05514 * 8 7 5 39 39 H 1.08998 * 110.31296 * 204.63813 * 9 8 7 40 40 H 1.09003 * 110.31142 * 82.47179 * 9 8 7 41 41 H 1.08998 * 109.59530 * 247.54858 * 14 13 11 42 42 H 1.09007 * 109.59488 * 8.00157 * 14 13 11 43 43 H 1.09003 * 109.48891 * 174.09049 * 15 14 13 44 44 H 1.09003 * 109.49460 * 294.13833 * 15 14 13 45 45 H 1.09008 * 113.79421 * 22.98254 * 18 17 16 46 46 H 1.09003 * 113.79462 * 154.45443 * 18 17 16 47 47 H 0.97000 * 120.00228 * 179.97438 * 23 22 20 48 48 H 1.08999 * 113.78923 * 270.03073 * 28 19 18 49 49 H 1.09006 * 113.89134 * 138.57638 * 28 19 18 50 50 H 1.08998 * 109.74758 * 348.03351 * 29 13 11 51 51 H 1.09003 * 109.74388 * 108.75796 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0690 -2.4954 6 1 0.5581 0.2358 -2.4936 7 6 2.0446 -0.7086 -3.7646 8 6 2.5383 0.4269 -4.7020 9 6 3.1677 1.4025 -3.6759 10 8 2.3215 1.3261 -2.5177 11 6 2.0324 -0.7104 1.2304 12 8 2.3086 -1.8902 1.1791 13 7 2.1747 -0.0347 2.3879 14 6 1.7383 1.3652 2.5080 15 6 0.8215 1.4916 3.7291 16 8 1.4934 0.9745 4.8820 17 6 1.8628 -0.3971 4.7703 18 6 0.6786 -1.3672 4.8772 19 7 0.9668 -1.3954 6.3252 20 6 0.2279 -1.6696 7.4449 21 1 0.6876 -1.6194 8.4210 22 6 -1.1122 -2.0117 7.3257 23 7 -1.6727 -2.0719 6.1364 24 14 -2.1203 -2.3850 8.8534 25 1 -2.7410 -1.1328 9.3551 26 1 -3.1844 -3.3647 8.5169 27 1 -1.2370 -2.9545 9.9024 28 6 2.3715 -1.0103 6.0816 29 6 2.7666 -0.6764 3.5747 30 1 -0.3633 -1.0232 -0.0956 31 1 -0.3633 0.5943 -0.8383 32 1 -0.3633 0.4287 0.9339 33 1 3.1263 -0.7994 -1.2057 34 1 1.6055 -1.7197 -1.2952 35 1 2.8502 -1.4098 -3.5469 36 1 1.1871 -1.2236 -4.1975 37 1 1.7047 0.8932 -5.2271 38 1 3.2863 0.0592 -5.4044 39 1 3.1741 2.4174 -4.0735 40 1 4.1806 1.0870 -3.4259 41 1 2.6081 2.0096 2.6356 42 1 1.1934 1.6566 1.6100 43 1 0.5750 2.5409 3.8918 44 1 -0.0940 0.9255 3.5568 45 1 -0.2826 -0.9170 4.6288 46 1 0.8452 -2.3213 4.3770 47 1 -2.6089 -2.3113 6.0530 48 1 3.0416 -1.8581 5.9397 49 1 2.7573 -0.2767 6.7896 50 1 2.8405 -1.7518 3.4136 51 1 3.7575 -0.2624 3.7615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053545362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:10 Heat of formation + Delta-G solvation = -63.889177 kcal Electronic energy + Delta-G solvation = -31130.030981 eV Core-core repulsion = 27031.609759 eV Total energy + Delta-G solvation = -4098.421223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57244 -39.79042 -38.71330 -36.17073 -34.83914 -34.34792 -32.45283 -32.21319 -30.31136 -29.68039 -27.85271 -26.42657 -26.14868 -25.03993 -23.54248 -23.24346 -22.12933 -21.62805 -20.64416 -18.97857 -18.50034 -17.42066 -17.12111 -16.77387 -16.24488 -16.09490 -15.45530 -15.22419 -14.86541 -14.70947 -14.61344 -14.17905 -14.06070 -13.89759 -13.71709 -13.49928 -13.25771 -12.97942 -12.74331 -12.39512 -12.35389 -12.13682 -12.08339 -11.87593 -11.69548 -11.61088 -11.30019 -11.15354 -11.07934 -10.94357 -10.85758 -10.82932 -10.76348 -10.59402 -10.18623 -9.92038 -9.77625 -9.55155 -9.37617 -9.17340 -8.78881 -8.16170 -6.83751 -5.71188 -3.03352 2.78919 3.05461 3.42928 3.47053 3.49286 3.54016 4.10286 4.15805 4.31691 4.48433 4.51911 4.58199 4.76573 4.83782 4.94299 4.97809 5.00272 5.09206 5.16995 5.24776 5.30796 5.33189 5.33343 5.38891 5.40196 5.45470 5.48370 5.51039 5.61942 5.68865 5.70005 5.76497 5.78912 5.88509 5.91182 6.03211 6.08594 6.11619 6.21494 6.34217 6.51384 6.53416 6.64472 6.76733 7.06090 7.23698 7.54092 7.54920 7.86546 8.02172 8.33601 9.08637 9.75344 10.62317 11.45881 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.002550 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.215725 B =10977.326170 C =11344.990246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.109 4.109 5 C 0.078 3.922 6 H 0.085 0.915 7 C -0.152 4.152 8 C -0.157 4.157 9 C 0.050 3.950 10 O -0.377 6.377 11 C 0.521 3.479 12 O -0.541 6.541 13 N -0.609 5.609 14 C 0.072 3.928 15 C 0.047 3.953 16 O -0.342 6.342 17 C 0.049 3.951 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.136 3.864 29 C 0.099 3.901 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.033 0.967 47 H 0.252 0.748 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.101 0.899 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 8.883 -21.839 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.116 0.884 4 C -0.147 4.147 5 C 0.021 3.979 6 H 0.103 0.897 7 C -0.190 4.190 8 C -0.195 4.195 9 C -0.027 4.027 10 O -0.297 6.297 11 C 0.310 3.690 12 O -0.418 6.418 13 N -0.343 5.343 14 C -0.051 4.051 15 C -0.031 4.031 16 O -0.260 6.260 17 C 0.008 3.992 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.345 4.345 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.010 3.990 29 C -0.025 4.025 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.119 0.881 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.360 8.414 -21.347 24.421 hybrid contribution -0.617 -0.529 0.421 0.916 sum 7.743 7.885 -20.926 23.665 Atomic orbital electron populations 1.21837 0.92587 1.03181 1.02747 1.21242 0.97780 1.01034 0.92616 0.88411 1.21815 1.01882 0.99002 0.91995 1.22868 0.97027 0.83700 0.94295 0.89691 1.23185 1.02382 0.98375 0.95045 1.23265 1.01333 0.96548 0.98362 1.23357 0.94145 0.99905 0.85285 1.88436 1.60168 1.36080 1.44996 1.20645 0.77235 0.87011 0.84126 1.90673 1.50888 1.15494 1.84789 1.48151 1.61735 1.12984 1.11431 1.22490 0.99653 0.82531 1.00447 1.22869 0.94857 0.99980 0.85384 1.87924 1.76646 1.23987 1.37396 1.23577 0.97554 0.83623 0.94479 1.22668 0.95877 0.93894 0.84856 1.45792 1.04105 1.80991 1.02113 1.18994 0.91211 1.39575 0.84705 0.90151 1.24774 0.96732 1.02178 0.96865 1.69820 1.11891 1.54366 1.20881 0.86105 0.79945 0.77689 0.81935 1.21569 1.21717 1.20689 1.22485 0.89567 0.95293 0.91697 1.22144 0.96160 1.00162 0.84000 0.91661 0.91323 0.91780 0.91221 0.89736 0.90195 0.89892 0.90401 0.90031 0.89869 0.92331 0.90768 0.88880 0.88164 0.92150 0.90668 0.94919 0.93760 0.93301 0.92633 0.88105 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.52 37.16 0.32 -1.25 16 2 C -0.11 -1.23 1.82 -91.77 -0.17 -1.40 16 3 H 0.10 1.06 6.40 -51.93 -0.33 0.72 16 4 C -0.11 -1.17 3.70 -26.73 -0.10 -1.27 16 5 C 0.08 0.68 3.38 -26.01 -0.09 0.60 16 6 H 0.09 0.70 6.46 -51.93 -0.34 0.36 16 7 C -0.15 -1.05 6.54 -24.79 -0.16 -1.21 16 8 C -0.16 -0.92 7.15 -24.49 -0.18 -1.09 16 9 C 0.05 0.36 7.78 38.18 0.30 0.65 16 10 O -0.38 -3.72 10.55 -35.23 -0.37 -4.09 16 11 C 0.52 8.16 6.81 -10.98 -0.07 8.08 16 12 O -0.54 -10.37 15.70 5.56 0.09 -10.28 16 13 N -0.61 -9.37 3.03 -172.70 -0.52 -9.90 16 14 C 0.07 0.90 6.12 -3.59 -0.02 0.88 16 15 C 0.05 0.71 6.88 37.27 0.26 0.97 16 16 O -0.34 -6.72 10.52 -35.23 -0.37 -7.09 16 17 C 0.05 0.99 1.21 -90.53 -0.11 0.88 16 18 C 0.15 3.80 6.64 -3.17 -0.02 3.78 16 19 N -0.60 -16.23 3.70 -180.33 -0.67 -16.90 16 20 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 21 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -28.15 11.39 55.49 0.63 -27.52 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.14 2.92 8.33 -3.18 -0.03 2.89 16 29 C 0.10 1.69 5.76 -3.86 -0.02 1.66 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.59 6.71 -51.93 -0.35 0.24 16 32 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 35 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.94 4.97 -51.93 -0.26 0.68 16 43 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.03 7.20 -51.93 -0.37 0.66 16 45 H 0.08 2.07 6.31 -51.92 -0.33 1.74 16 46 H 0.03 0.86 7.92 -51.93 -0.41 0.45 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.10 1.88 6.86 -51.93 -0.36 1.52 16 51 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -35.33 392.34 -9.24 -44.57 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.56 Total: 0.22 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.35 Total: 7.33 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.56 Total: -54.31 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.66 Total: -21.46 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.33 -9.24 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053545362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.319 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds