Wall clock time and date at job start Tue Mar 31 2020 20:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46660 * 2 1 4 4 C 1.52997 * 109.46989 * 240.00625 * 2 1 3 5 5 C 1.52996 * 109.47816 * 64.99617 * 4 2 1 6 6 H 1.08998 * 109.82225 * 305.57025 * 5 4 2 7 7 C 1.54379 * 109.83427 * 184.58715 * 5 4 2 8 8 C 1.55301 * 102.25280 * 219.12993 * 7 5 4 9 9 C 1.54939 * 100.94293 * 34.13350 * 8 7 5 10 10 O 1.43239 * 109.82707 * 66.45189 * 5 4 2 11 11 C 1.50701 * 109.47325 * 120.00199 * 2 1 3 12 12 O 1.21278 * 119.99776 * 94.29159 * 11 2 1 13 13 N 1.34779 * 119.99819 * 274.29230 * 11 2 1 14 14 C 1.47126 * 121.05661 * 5.32395 * 13 11 2 15 15 C 1.53219 * 108.72725 * 127.77430 * 14 13 11 16 16 O 1.43105 * 109.34680 * 54.12538 * 15 14 13 17 17 C 1.42486 * 113.97844 * 300.04656 * 16 15 14 18 18 C 1.53459 * 113.76821 * 286.78976 * 17 16 15 19 19 N 1.47666 * 85.97362 * 268.72012 * 18 17 16 20 20 C 1.36933 * 134.45626 * 155.74540 * 19 18 17 21 21 H 1.08008 * 119.99661 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00388 * 359.95002 * 20 19 18 23 23 N 1.31616 * 119.99829 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99948 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47305 * 90.00164 * 24 22 20 26 26 H 1.48502 * 109.46856 * 209.99796 * 24 22 20 27 27 H 1.48491 * 109.47164 * 329.99596 * 24 22 20 28 28 C 1.47677 * 91.08492 * 335.70842 * 19 18 17 29 29 C 1.47336 * 121.05200 * 185.04355 * 13 11 2 30 30 H 1.09002 * 109.46862 * 174.66184 * 1 2 3 31 31 H 1.08997 * 109.47157 * 54.66652 * 1 2 3 32 32 H 1.08998 * 109.47103 * 294.65734 * 1 2 3 33 33 H 1.09005 * 109.47053 * 185.00163 * 4 2 1 34 34 H 1.09002 * 109.46976 * 304.98996 * 4 2 1 35 35 H 1.08999 * 110.84736 * 337.32458 * 7 5 4 36 36 H 1.09000 * 110.84905 * 100.94098 * 7 5 4 37 37 H 1.09002 * 111.12772 * 276.21245 * 8 7 5 38 38 H 1.09002 * 111.12391 * 152.05514 * 8 7 5 39 39 H 1.08998 * 110.31296 * 204.63813 * 9 8 7 40 40 H 1.09003 * 110.31142 * 82.47179 * 9 8 7 41 41 H 1.08998 * 109.59530 * 247.54858 * 14 13 11 42 42 H 1.09007 * 109.59488 * 8.00157 * 14 13 11 43 43 H 1.09003 * 109.48891 * 174.09049 * 15 14 13 44 44 H 1.09003 * 109.49460 * 294.13833 * 15 14 13 45 45 H 1.09008 * 113.79421 * 22.98254 * 18 17 16 46 46 H 1.09003 * 113.79462 * 154.45443 * 18 17 16 47 47 H 0.97000 * 120.00228 * 179.97438 * 23 22 20 48 48 H 1.08999 * 113.78923 * 270.03073 * 28 19 18 49 49 H 1.09006 * 113.89134 * 138.57638 * 28 19 18 50 50 H 1.08998 * 109.74758 * 348.03351 * 29 13 11 51 51 H 1.09003 * 109.74388 * 108.75796 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0690 -2.4954 6 1 0.5581 0.2358 -2.4936 7 6 2.0446 -0.7086 -3.7646 8 6 2.5383 0.4269 -4.7020 9 6 3.1677 1.4025 -3.6759 10 8 2.3215 1.3261 -2.5177 11 6 2.0324 -0.7104 1.2304 12 8 2.3086 -1.8902 1.1791 13 7 2.1747 -0.0347 2.3879 14 6 1.7383 1.3652 2.5080 15 6 0.8215 1.4916 3.7291 16 8 1.4934 0.9745 4.8820 17 6 1.8628 -0.3971 4.7703 18 6 0.6786 -1.3672 4.8772 19 7 0.9668 -1.3954 6.3252 20 6 0.2279 -1.6696 7.4449 21 1 0.6876 -1.6194 8.4210 22 6 -1.1122 -2.0117 7.3257 23 7 -1.6727 -2.0719 6.1364 24 14 -2.1203 -2.3850 8.8534 25 1 -2.7410 -1.1328 9.3551 26 1 -3.1844 -3.3647 8.5169 27 1 -1.2370 -2.9545 9.9024 28 6 2.3715 -1.0103 6.0816 29 6 2.7666 -0.6764 3.5747 30 1 -0.3633 -1.0232 -0.0956 31 1 -0.3633 0.5943 -0.8383 32 1 -0.3633 0.4287 0.9339 33 1 3.1263 -0.7994 -1.2057 34 1 1.6055 -1.7197 -1.2952 35 1 2.8502 -1.4098 -3.5469 36 1 1.1871 -1.2236 -4.1975 37 1 1.7047 0.8932 -5.2271 38 1 3.2863 0.0592 -5.4044 39 1 3.1741 2.4174 -4.0735 40 1 4.1806 1.0870 -3.4259 41 1 2.6081 2.0096 2.6356 42 1 1.1934 1.6566 1.6100 43 1 0.5750 2.5409 3.8918 44 1 -0.0940 0.9255 3.5568 45 1 -0.2826 -0.9170 4.6288 46 1 0.8452 -2.3213 4.3770 47 1 -2.6089 -2.3113 6.0530 48 1 3.0416 -1.8581 5.9397 49 1 2.7573 -0.2767 6.7896 50 1 2.8405 -1.7518 3.4136 51 1 3.7575 -0.2624 3.7615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053545362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:09 Heat of formation + Delta-G solvation = -88.326163 kcal Electronic energy + Delta-G solvation = -31131.090649 eV Core-core repulsion = 27031.609759 eV Total energy + Delta-G solvation = -4099.480890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88292 -40.70700 -39.98541 -37.78211 -35.89007 -35.65666 -34.29409 -33.01427 -31.62805 -30.66183 -29.42592 -27.90397 -27.14897 -26.89040 -24.78522 -24.52812 -23.30252 -22.51855 -21.56391 -20.53871 -19.70061 -18.84513 -18.46296 -17.83288 -17.57733 -17.12788 -16.94141 -16.52996 -16.40050 -16.00933 -15.78420 -15.38808 -15.24680 -15.09645 -14.95308 -14.79665 -14.38589 -14.23365 -14.11640 -13.75104 -13.48277 -13.33924 -13.05023 -13.01127 -12.87435 -12.78589 -12.63886 -12.53273 -12.48714 -12.20099 -12.07630 -11.97128 -11.80674 -11.72955 -11.63970 -11.61185 -11.42937 -10.99085 -10.81826 -10.69444 -10.36117 -9.54281 -8.97294 -7.92775 -5.27673 1.42106 1.45540 1.53797 1.56093 1.86283 2.43989 2.63095 2.94813 3.24215 3.31083 3.37866 3.61473 3.64190 3.75757 3.77311 3.91037 3.96848 4.04260 4.11478 4.15875 4.30190 4.32124 4.35964 4.39378 4.49416 4.58348 4.59442 4.62436 4.68064 4.74253 4.79054 4.83601 4.83931 4.87915 4.91475 4.93627 4.96913 5.01127 5.09405 5.10152 5.18953 5.20985 5.25639 5.33855 5.38372 5.43837 5.86165 6.15268 6.30595 6.35895 6.86214 7.10223 7.56085 8.49423 9.23836 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.002550 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.215725 B =10977.326170 C =11344.990246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.116 0.884 4 C -0.105 4.105 5 C 0.081 3.919 6 H 0.094 0.906 7 C -0.154 4.154 8 C -0.150 4.150 9 C 0.041 3.959 10 O -0.395 6.395 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.614 5.614 14 C 0.078 3.922 15 C 0.040 3.960 16 O -0.361 6.361 17 C 0.079 3.921 18 C 0.154 3.846 19 N -0.635 5.635 20 C -0.233 4.233 21 H 0.087 0.913 22 C -0.072 4.072 23 N -0.956 5.956 24 Si 0.984 3.016 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.267 1.267 28 C 0.134 3.866 29 C 0.106 3.894 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.032 0.968 45 H 0.040 0.960 46 H 0.007 0.993 47 H 0.247 0.753 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 10.965 -22.952 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.134 0.866 4 C -0.143 4.143 5 C 0.024 3.976 6 H 0.112 0.888 7 C -0.191 4.191 8 C -0.188 4.188 9 C -0.035 4.035 10 O -0.315 6.315 11 C 0.304 3.696 12 O -0.465 6.465 13 N -0.347 5.347 14 C -0.044 4.044 15 C -0.037 4.037 16 O -0.279 6.279 17 C 0.037 3.963 18 C 0.028 3.972 19 N -0.362 5.362 20 C -0.361 4.361 21 H 0.105 0.895 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.812 3.188 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.191 1.191 28 C 0.009 3.991 29 C -0.018 4.018 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.153 0.847 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.259 10.537 -22.464 26.484 hybrid contribution -0.860 -1.151 0.763 1.627 sum 8.399 9.386 -21.701 25.092 Atomic orbital electron populations 1.21842 0.91785 1.02791 1.03627 1.21268 0.98185 1.01356 0.90829 0.86607 1.21772 1.00943 0.98811 0.92752 1.22846 0.97351 0.83553 0.93842 0.88839 1.23206 1.02766 0.98609 0.94565 1.23260 1.01860 0.95624 0.98039 1.23544 0.93845 1.01107 0.85007 1.88402 1.60614 1.36234 1.46293 1.21448 0.76298 0.86681 0.85155 1.90651 1.52716 1.17532 1.85553 1.48313 1.61420 1.14140 1.10780 1.22660 1.00397 0.81137 1.00218 1.23166 0.94075 1.01077 0.85352 1.87881 1.77051 1.23001 1.39982 1.23070 0.95043 0.83101 0.95119 1.22486 0.96462 0.93972 0.84286 1.46201 1.06677 1.81102 1.02196 1.19440 0.91910 1.38832 0.85895 0.89519 1.25708 0.97996 1.02671 1.00018 1.70039 1.11743 1.55654 1.23091 0.84999 0.78066 0.77340 0.78444 1.20998 1.22110 1.19138 1.22713 0.87497 0.96193 0.92691 1.21917 0.96772 0.99560 0.83538 0.93183 0.88440 0.92408 0.92432 0.90966 0.90708 0.88746 0.89569 0.88646 0.88571 0.92456 0.88024 0.86008 0.84744 0.94938 0.94161 0.97546 0.94392 0.91263 0.91394 0.90108 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 71.98 0.61 -2.31 16 2 C -0.10 -2.12 1.82 -11.54 -0.02 -2.14 16 3 H 0.12 2.17 6.40 -2.39 -0.02 2.16 16 4 C -0.10 -2.18 3.70 30.59 0.11 -2.07 16 5 C 0.08 1.28 3.38 31.06 0.10 1.38 16 6 H 0.09 1.31 6.46 -2.39 -0.02 1.29 16 7 C -0.15 -1.85 6.54 31.85 0.21 -1.64 16 8 C -0.15 -1.38 7.15 32.05 0.23 -1.15 16 9 C 0.04 0.50 7.78 72.65 0.56 1.07 16 10 O -0.40 -6.90 10.55 -148.98 -1.57 -8.47 16 11 C 0.51 16.04 6.81 87.66 0.60 16.63 16 12 O -0.58 -23.15 15.70 -3.02 -0.05 -23.19 16 13 N -0.61 -18.32 3.03 -818.70 -2.48 -20.81 16 14 C 0.08 1.75 6.12 86.33 0.53 2.28 16 15 C 0.04 1.17 6.88 72.06 0.50 1.67 16 16 O -0.36 -13.90 10.52 -148.98 -1.57 -15.47 16 17 C 0.08 3.17 1.21 -10.64 -0.01 3.16 16 18 C 0.15 8.03 6.64 86.30 0.57 8.60 16 19 N -0.64 -35.01 3.70 -729.31 -2.70 -37.71 16 20 C -0.23 -13.77 10.70 84.03 0.90 -12.88 16 21 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 22 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 23 N -0.96 -60.70 11.39 21.65 0.25 -60.45 16 24 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 28 C 0.13 5.73 8.33 86.30 0.72 6.45 16 29 C 0.11 3.57 5.76 86.04 0.50 4.07 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.44 6.71 -2.39 -0.02 1.42 16 32 H 0.06 1.25 7.22 -2.39 -0.02 1.24 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 35 H 0.07 0.97 7.85 -2.39 -0.02 0.95 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.12 2.06 4.97 -2.38 -0.01 2.05 16 43 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 45 H 0.04 2.36 6.31 -2.38 -0.02 2.34 16 46 H 0.01 0.38 7.92 -2.39 -0.02 0.36 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 49 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 50 H 0.08 3.08 6.86 -2.39 -0.02 3.06 16 51 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -80.25 392.34 1.39 -78.86 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.91 Total: 18.28 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.58 Total: 19.31 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -4.94 Total: -118.97 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -3.19 Total: -47.13 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -80.25 1.39 -78.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053545362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.469 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds