Wall clock time and date at job start Tue Mar 31 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00158 * 2 1 4 4 H 1.09001 * 109.47009 * 29.99428 * 3 2 1 5 5 C 1.53002 * 109.47036 * 270.00024 * 3 2 1 6 6 C 1.50700 * 109.47291 * 149.99746 * 3 2 1 7 7 O 1.21277 * 120.00194 * 16.18348 * 6 3 2 8 8 N 1.34781 * 119.99743 * 196.18428 * 6 3 2 9 9 C 1.47529 * 125.55783 * 356.21040 * 8 6 3 10 10 C 1.54095 * 104.76402 * 203.75459 * 9 8 6 11 11 C 1.52140 * 110.64440 * 81.57520 * 10 9 8 12 12 C 1.53342 * 109.45246 * 64.35366 * 11 10 9 13 13 N 1.46929 * 108.69027 * 53.34736 * 12 11 10 14 14 C 1.36937 * 120.56804 * 125.64088 * 13 12 11 15 15 H 1.07997 * 119.99898 * 215.54485 * 14 13 12 16 16 C 1.38806 * 119.99544 * 35.54569 * 14 13 12 17 17 N 1.31618 * 120.00398 * 24.08149 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 204.08077 * 16 14 13 19 19 H 1.48496 * 109.47033 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46993 * 240.00329 * 18 16 14 21 21 H 1.48495 * 109.46875 * 120.00382 * 18 16 14 22 22 C 1.46934 * 118.86678 * 305.91326 * 13 12 11 23 23 C 1.52117 * 110.66605 * 205.74657 * 10 9 8 24 24 C 1.54378 * 102.65367 * 323.68078 * 10 9 8 25 25 H 1.09000 * 113.33961 * 157.29162 * 24 10 9 26 26 C 1.53814 * 108.71271 * 285.09684 * 24 10 9 27 27 O 1.42769 * 108.44275 * 123.17075 * 26 24 10 28 28 C 1.42901 * 110.69206 * 1.83552 * 27 26 24 29 29 C 1.46748 * 125.55600 * 176.18455 * 8 6 3 30 30 H 1.09004 * 111.71459 * 54.60598 * 29 8 6 31 31 H 1.09003 * 109.46837 * 60.00063 * 1 2 3 32 32 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47399 * 300.00268 * 1 2 3 34 34 H 1.08998 * 109.47065 * 186.69196 * 5 3 2 35 35 H 1.09003 * 109.46806 * 306.68292 * 5 3 2 36 36 H 1.08999 * 109.47432 * 66.68555 * 5 3 2 37 37 H 1.08998 * 110.38010 * 84.93952 * 9 8 6 38 38 H 1.08997 * 110.38444 * 322.57937 * 9 8 6 39 39 H 1.09006 * 109.47193 * 304.36119 * 11 10 9 40 40 H 1.09001 * 109.47728 * 184.35432 * 11 10 9 41 41 H 1.09002 * 109.60069 * 293.58381 * 12 11 10 42 42 H 1.09004 * 109.59770 * 173.10633 * 12 11 10 43 43 H 0.96998 * 119.99742 * 6.13760 * 17 16 14 44 44 H 1.09005 * 109.59668 * 173.83731 * 22 13 12 45 45 H 1.09006 * 109.59623 * 294.30509 * 22 13 12 46 46 H 1.09004 * 109.47158 * 55.64022 * 23 10 9 47 47 H 1.09004 * 109.47467 * 175.64290 * 23 10 9 48 48 H 1.09003 * 109.68517 * 3.40152 * 26 24 10 49 49 H 1.08995 * 109.62501 * 242.91081 * 26 24 10 50 50 H 1.09005 * 109.89666 * 222.68321 * 28 27 26 51 51 H 1.09006 * 109.89714 * 101.47646 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 8 3.8861 0.2005 0.9110 8 7 3.9182 2.4086 1.1230 9 6 3.4030 3.7687 0.8757 10 6 4.6406 4.6815 0.9751 11 6 5.4221 4.6697 -0.3302 12 6 4.5612 5.2736 -1.4463 13 7 4.0864 6.5946 -1.0122 14 6 4.3090 7.7031 -1.7848 15 1 4.5094 8.6557 -1.3172 16 6 4.2769 7.6021 -3.1688 17 7 3.5971 6.6320 -3.7424 18 14 5.1986 8.8433 -4.2173 19 1 5.8785 9.8271 -3.3370 20 1 4.2400 9.5519 -5.1030 21 1 6.2093 8.1380 -5.0456 22 6 3.3740 6.7068 0.2680 23 6 4.2359 6.0933 1.3713 24 6 5.4608 4.0176 2.1019 25 1 6.5222 4.2630 2.0655 26 6 4.7927 4.3340 3.4508 27 8 4.4902 3.1017 4.1050 28 6 4.9389 1.9921 3.3243 29 6 5.1644 2.5053 1.8919 30 1 5.9840 1.9822 1.3991 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.7677 2.7123 -1.4449 35 1 2.7844 1.0179 -1.9897 36 1 1.2488 1.9156 -1.9207 37 1 2.6692 4.0405 1.6344 38 1 2.9630 3.8329 -0.1194 39 1 5.6835 3.6433 -0.5879 40 1 6.3321 5.2583 -0.2143 41 1 3.7078 4.6243 -1.6418 42 1 5.1584 5.3792 -2.3520 43 1 3.0469 6.0415 -3.2043 44 1 3.1887 7.7573 0.4924 45 1 2.4268 6.1708 0.2075 46 1 3.6688 6.0612 2.3017 47 1 5.1294 6.7017 1.5113 48 1 3.8738 4.8958 3.2826 49 1 5.4736 4.9201 4.0680 50 1 4.1808 1.2088 3.3227 51 1 5.8735 1.6059 3.7314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079225905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:08 Heat of formation + Delta-G solvation = -89.878336 kcal Electronic energy + Delta-G solvation = -32817.567882 eV Core-core repulsion = 28718.019684 eV Total energy + Delta-G solvation = -4099.548197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65237 -39.38432 -37.94531 -37.46623 -35.59971 -33.65030 -32.17371 -31.11882 -30.58381 -29.86750 -28.37445 -26.97639 -26.53420 -24.80517 -24.22898 -23.38398 -22.14833 -21.74157 -20.49835 -19.50260 -18.46358 -17.68824 -17.25526 -16.74851 -16.49886 -16.08743 -15.59721 -15.44796 -15.07989 -14.79802 -14.64872 -14.20459 -13.98038 -13.94373 -13.58658 -13.42535 -13.37231 -13.17661 -12.86078 -12.65329 -12.33211 -12.27993 -12.05358 -11.90149 -11.84171 -11.62711 -11.47115 -11.38409 -11.21510 -11.07413 -10.76070 -10.54301 -10.41121 -10.16328 -10.12977 -9.99984 -9.86247 -9.56617 -9.43618 -9.31219 -8.70426 -8.43412 -6.93443 -6.13800 -3.41385 2.51781 2.60504 3.45441 3.46977 3.60792 3.71368 3.81019 4.04923 4.36733 4.50301 4.51221 4.73517 4.77820 4.84031 4.90792 4.91491 5.01142 5.14147 5.15851 5.19873 5.21304 5.28431 5.34108 5.42739 5.44162 5.50667 5.58867 5.63239 5.66043 5.71288 5.72512 5.75163 5.81084 5.88313 6.01359 6.10491 6.19684 6.20838 6.33734 6.37183 6.40484 6.60107 6.66713 6.87224 6.89177 6.96416 7.03156 7.41041 8.00226 8.10217 8.50794 9.02545 9.73489 10.20660 11.11050 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004379 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.268409 B = 6392.222608 C = 8018.849219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.076 3.924 4 H 0.083 0.917 5 C -0.175 4.175 6 C 0.535 3.465 7 O -0.524 6.524 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.045 4.045 11 C -0.123 4.123 12 C 0.156 3.844 13 N -0.594 5.594 14 C -0.355 4.355 15 H 0.052 0.948 16 C -0.016 4.016 17 N -0.910 5.910 18 Si 1.066 2.934 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.146 3.854 23 C -0.127 4.127 24 C -0.123 4.123 25 H 0.112 0.888 26 C 0.051 3.949 27 O -0.381 6.381 28 C 0.047 3.953 29 C 0.114 3.886 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.268 0.732 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 -7.313 11.159 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.015 3.985 4 H 0.100 0.900 5 C -0.232 4.232 6 C 0.323 3.677 7 O -0.399 6.399 8 N -0.341 5.341 9 C -0.024 4.024 10 C -0.045 4.045 11 C -0.162 4.162 12 C 0.030 3.970 13 N -0.318 5.318 14 C -0.484 4.484 15 H 0.070 0.930 16 C -0.219 4.219 17 N -0.549 5.549 18 Si 0.896 3.104 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.216 1.216 22 C 0.020 3.980 23 C -0.166 4.166 24 C -0.142 4.142 25 H 0.130 0.870 26 C -0.025 4.025 27 O -0.300 6.300 28 C -0.030 4.030 29 C 0.010 3.990 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.159 -7.749 9.848 12.585 hybrid contribution -0.515 -0.081 1.355 1.452 sum -1.674 -7.830 11.203 13.770 Atomic orbital electron populations 1.22883 0.80611 1.03107 1.00214 1.88021 1.19665 1.25285 1.95010 1.21875 0.92923 0.86519 0.97181 0.89955 1.22316 1.03778 1.02861 0.94263 1.20047 0.86613 0.82587 0.78496 1.90697 1.64373 1.29003 1.55797 1.48362 1.24662 1.06259 1.54788 1.22682 0.97053 0.80183 1.02443 1.20978 0.93654 0.94919 0.94997 1.21932 0.99393 1.00041 0.94855 1.20948 0.94641 0.86246 0.95159 1.44041 1.63292 1.04427 1.20050 1.19921 1.49044 0.89455 0.89975 0.93035 1.25930 0.98828 1.01962 0.95223 1.70735 1.25594 1.19994 1.38546 0.83517 0.76210 0.75211 0.75433 1.21733 1.22026 1.21628 1.20876 0.92336 0.98522 0.86310 1.21992 1.01501 0.94004 0.99074 1.23616 1.01490 0.93237 0.95878 0.87033 1.23314 1.00466 0.87028 0.91650 1.88148 1.82042 1.14022 1.45784 1.23360 1.00300 0.89918 0.89421 1.22753 0.87878 0.96357 0.92024 0.88106 0.93592 0.89187 0.93913 0.90091 0.90817 0.90947 0.91294 0.88962 0.92910 0.91628 0.96527 0.90867 0.92091 0.92337 0.96694 0.91881 0.91303 0.89827 0.91366 0.89788 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.36 -5.13 9.93 -54.60 -0.54 -5.68 16 3 C 0.08 1.03 2.48 -27.88 -0.07 0.96 16 4 H 0.08 0.96 7.52 -51.93 -0.39 0.56 16 5 C -0.17 -2.28 9.34 37.16 0.35 -1.93 16 6 C 0.53 8.35 6.70 -10.98 -0.07 8.27 16 7 O -0.52 -9.83 16.56 -13.81 -0.23 -10.06 16 8 N -0.61 -8.46 2.98 -162.42 -0.48 -8.94 16 9 C 0.10 1.33 3.94 -2.91 -0.01 1.32 16 10 C -0.04 -0.61 0.37 -154.10 -0.06 -0.67 16 11 C -0.12 -2.01 4.90 -26.99 -0.13 -2.14 16 12 C 0.16 3.21 4.51 -3.63 -0.02 3.19 16 13 N -0.59 -13.23 2.73 -172.42 -0.47 -13.70 16 14 C -0.35 -9.18 9.39 -15.06 -0.14 -9.32 16 15 H 0.05 1.37 7.94 -52.49 -0.42 0.95 16 16 C -0.02 -0.42 4.66 -17.43 -0.08 -0.51 16 17 N -0.91 -25.68 12.70 55.49 0.70 -24.98 16 18 Si 1.07 24.14 29.98 -169.99 -5.10 19.04 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.15 2.65 6.22 -3.88 -0.02 2.63 16 23 C -0.13 -1.80 4.40 -27.26 -0.12 -1.92 16 24 C -0.12 -1.47 3.44 -88.12 -0.30 -1.77 16 25 H 0.11 1.21 8.13 -51.93 -0.42 0.79 16 26 C 0.05 0.60 6.47 37.58 0.24 0.84 16 27 O -0.38 -5.18 11.27 -35.23 -0.40 -5.58 16 28 C 0.05 0.61 7.37 37.58 0.28 0.89 16 29 C 0.11 1.48 3.34 -66.02 -0.22 1.26 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.39 8.04 -51.93 -0.42 -0.02 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.08 1.13 5.05 -51.93 -0.26 0.87 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 37 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 38 H 0.09 1.34 3.69 -51.93 -0.19 1.15 16 39 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.35 5.56 -51.93 -0.29 0.06 16 42 H 0.07 1.76 6.81 -51.93 -0.35 1.40 16 43 H 0.27 7.57 7.05 -40.82 -0.29 7.28 16 44 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.02 0.27 7.64 -51.93 -0.40 -0.13 16 46 H 0.06 0.76 5.56 -51.93 -0.29 0.47 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.08 0.97 4.61 -51.93 -0.24 0.73 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.21 7.43 -51.93 -0.39 0.82 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -31.14 377.20 -8.26 -39.40 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.14 Total: 2.35 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.71 Total: 2.47 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.25 Total: -47.62 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.17 Total: -21.31 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.10 Total: 19.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.14 -8.26 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079225905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.482 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds