Wall clock time and date at job start Tue Mar 31 2020 21:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00158 * 2 1 4 4 H 1.09001 * 109.47009 * 29.99428 * 3 2 1 5 5 C 1.53002 * 109.47036 * 270.00024 * 3 2 1 6 6 C 1.50700 * 109.47291 * 149.99746 * 3 2 1 7 7 O 1.21277 * 120.00194 * 16.18348 * 6 3 2 8 8 N 1.34781 * 119.99743 * 196.18428 * 6 3 2 9 9 C 1.47529 * 125.55783 * 356.21040 * 8 6 3 10 10 C 1.54095 * 104.76402 * 203.75459 * 9 8 6 11 11 C 1.52140 * 110.64440 * 81.57520 * 10 9 8 12 12 C 1.53342 * 109.45246 * 64.35366 * 11 10 9 13 13 N 1.46929 * 108.69027 * 53.34736 * 12 11 10 14 14 C 1.36937 * 120.56804 * 125.64088 * 13 12 11 15 15 H 1.07997 * 119.99898 * 215.54485 * 14 13 12 16 16 C 1.38806 * 119.99544 * 35.54569 * 14 13 12 17 17 N 1.31618 * 120.00398 * 24.08149 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 204.08077 * 16 14 13 19 19 H 1.48496 * 109.47033 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46993 * 240.00329 * 18 16 14 21 21 H 1.48495 * 109.46875 * 120.00382 * 18 16 14 22 22 C 1.46934 * 118.86678 * 305.91326 * 13 12 11 23 23 C 1.52117 * 110.66605 * 205.74657 * 10 9 8 24 24 C 1.54378 * 102.65367 * 323.68078 * 10 9 8 25 25 H 1.09000 * 113.33961 * 157.29162 * 24 10 9 26 26 C 1.53814 * 108.71271 * 285.09684 * 24 10 9 27 27 O 1.42769 * 108.44275 * 123.17075 * 26 24 10 28 28 C 1.42901 * 110.69206 * 1.83552 * 27 26 24 29 29 C 1.46748 * 125.55600 * 176.18455 * 8 6 3 30 30 H 1.09004 * 111.71459 * 54.60598 * 29 8 6 31 31 H 1.09003 * 109.46837 * 60.00063 * 1 2 3 32 32 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47399 * 300.00268 * 1 2 3 34 34 H 1.08998 * 109.47065 * 186.69196 * 5 3 2 35 35 H 1.09003 * 109.46806 * 306.68292 * 5 3 2 36 36 H 1.08999 * 109.47432 * 66.68555 * 5 3 2 37 37 H 1.08998 * 110.38010 * 84.93952 * 9 8 6 38 38 H 1.08997 * 110.38444 * 322.57937 * 9 8 6 39 39 H 1.09006 * 109.47193 * 304.36119 * 11 10 9 40 40 H 1.09001 * 109.47728 * 184.35432 * 11 10 9 41 41 H 1.09002 * 109.60069 * 293.58381 * 12 11 10 42 42 H 1.09004 * 109.59770 * 173.10633 * 12 11 10 43 43 H 0.96998 * 119.99742 * 6.13760 * 17 16 14 44 44 H 1.09005 * 109.59668 * 173.83731 * 22 13 12 45 45 H 1.09006 * 109.59623 * 294.30509 * 22 13 12 46 46 H 1.09004 * 109.47158 * 55.64022 * 23 10 9 47 47 H 1.09004 * 109.47467 * 175.64290 * 23 10 9 48 48 H 1.09003 * 109.68517 * 3.40152 * 26 24 10 49 49 H 1.08995 * 109.62501 * 242.91081 * 26 24 10 50 50 H 1.09005 * 109.89666 * 222.68321 * 28 27 26 51 51 H 1.09006 * 109.89714 * 101.47646 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 8 3.8861 0.2005 0.9110 8 7 3.9182 2.4086 1.1230 9 6 3.4030 3.7687 0.8757 10 6 4.6406 4.6815 0.9751 11 6 5.4221 4.6697 -0.3302 12 6 4.5612 5.2736 -1.4463 13 7 4.0864 6.5946 -1.0122 14 6 4.3090 7.7031 -1.7848 15 1 4.5094 8.6557 -1.3172 16 6 4.2769 7.6021 -3.1688 17 7 3.5971 6.6320 -3.7424 18 14 5.1986 8.8433 -4.2173 19 1 5.8785 9.8271 -3.3370 20 1 4.2400 9.5519 -5.1030 21 1 6.2093 8.1380 -5.0456 22 6 3.3740 6.7068 0.2680 23 6 4.2359 6.0933 1.3713 24 6 5.4608 4.0176 2.1019 25 1 6.5222 4.2630 2.0655 26 6 4.7927 4.3340 3.4508 27 8 4.4902 3.1017 4.1050 28 6 4.9389 1.9921 3.3243 29 6 5.1644 2.5053 1.8919 30 1 5.9840 1.9822 1.3991 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.7677 2.7123 -1.4449 35 1 2.7844 1.0179 -1.9897 36 1 1.2488 1.9156 -1.9207 37 1 2.6692 4.0405 1.6344 38 1 2.9630 3.8329 -0.1194 39 1 5.6835 3.6433 -0.5879 40 1 6.3321 5.2583 -0.2143 41 1 3.7078 4.6243 -1.6418 42 1 5.1584 5.3792 -2.3520 43 1 3.0469 6.0415 -3.2043 44 1 3.1887 7.7573 0.4924 45 1 2.4268 6.1708 0.2075 46 1 3.6688 6.0612 2.3017 47 1 5.1294 6.7017 1.5113 48 1 3.8738 4.8958 3.2826 49 1 5.4736 4.9201 4.0680 50 1 4.1808 1.2088 3.3227 51 1 5.8735 1.6059 3.7314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079225905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:07 Heat of formation + Delta-G solvation = -109.377930 kcal Electronic energy + Delta-G solvation = -32818.413447 eV Core-core repulsion = 28718.019684 eV Total energy + Delta-G solvation = -4100.393763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.76546 -40.52196 -39.23587 -38.52477 -36.98658 -35.11925 -33.40196 -32.55198 -32.02434 -31.00652 -29.60742 -27.93416 -27.68914 -26.38352 -25.34230 -24.70799 -23.55259 -22.91649 -21.79636 -20.64387 -19.90096 -19.10069 -18.59546 -17.75435 -17.60488 -17.20819 -16.65124 -16.53259 -16.21850 -16.04556 -15.98641 -15.67484 -15.45697 -15.19514 -15.10171 -14.77136 -14.55519 -14.35813 -14.02655 -13.77245 -13.57631 -13.39895 -13.26802 -13.06524 -12.94233 -12.86676 -12.73568 -12.64301 -12.49973 -12.41845 -12.18381 -11.98753 -11.88381 -11.66960 -11.60920 -11.23277 -11.14834 -11.01485 -10.65003 -10.44438 -10.38054 -9.84511 -8.83034 -8.14729 -5.43315 1.34013 1.52550 1.60690 1.66417 1.82505 2.66538 2.72645 2.83707 3.02739 3.20613 3.30835 3.43089 3.57687 3.67844 3.75878 3.79972 3.87843 3.94620 3.96376 4.09049 4.18645 4.24732 4.36744 4.39317 4.42242 4.47080 4.55311 4.56688 4.59147 4.62342 4.64936 4.66365 4.76740 4.78686 4.82590 4.88013 4.98515 5.00936 5.10118 5.11454 5.18381 5.21231 5.25224 5.29825 5.52381 5.94354 5.96783 6.01048 6.27451 6.46773 6.92620 7.14943 7.81425 8.29215 9.04226 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004379 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.268409 B = 6392.222608 C = 8018.849219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.080 3.920 4 H 0.103 0.897 5 C -0.168 4.168 6 C 0.529 3.471 7 O -0.562 6.562 8 N -0.601 5.601 9 C 0.101 3.899 10 C -0.040 4.040 11 C -0.108 4.108 12 C 0.165 3.835 13 N -0.611 5.611 14 C -0.353 4.353 15 H 0.044 0.956 16 C -0.065 4.065 17 N -0.939 5.939 18 Si 1.109 2.891 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.291 1.291 22 C 0.141 3.859 23 C -0.113 4.113 24 C -0.108 4.108 25 H 0.130 0.870 26 C 0.051 3.949 27 O -0.393 6.393 28 C 0.054 3.946 29 C 0.106 3.894 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.012 0.988 42 H 0.030 0.970 43 H 0.256 0.744 44 H 0.050 0.950 45 H 0.021 0.979 46 H 0.096 0.904 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.065 0.935 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -6.680 13.150 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.019 3.981 4 H 0.121 0.879 5 C -0.226 4.226 6 C 0.318 3.682 7 O -0.440 6.440 8 N -0.335 5.335 9 C -0.021 4.021 10 C -0.041 4.041 11 C -0.147 4.147 12 C 0.039 3.961 13 N -0.335 5.335 14 C -0.484 4.484 15 H 0.062 0.938 16 C -0.263 4.263 17 N -0.580 5.580 18 Si 0.935 3.065 19 H -0.199 1.199 20 H -0.220 1.220 21 H -0.218 1.218 22 C 0.016 3.984 23 C -0.151 4.151 24 C -0.127 4.127 25 H 0.148 0.852 26 C -0.024 4.024 27 O -0.313 6.313 28 C -0.024 4.024 29 C 0.002 3.998 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.083 0.917 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.066 -7.093 11.882 13.879 hybrid contribution -0.603 -0.281 0.770 1.018 sum -1.669 -7.374 12.652 14.739 Atomic orbital electron populations 1.23132 0.78487 1.04501 1.01384 1.87989 1.22070 1.25650 1.95143 1.21878 0.92295 0.86967 0.96997 0.87917 1.22246 1.04287 1.01687 0.94341 1.20494 0.87219 0.82350 0.78149 1.90668 1.65525 1.30354 1.57496 1.48390 1.24857 1.06058 1.54217 1.22683 0.97204 0.79819 1.02409 1.20856 0.93840 0.95116 0.94307 1.21712 0.98656 0.99621 0.94743 1.20754 0.94424 0.85881 0.95036 1.44228 1.64323 1.03967 1.21028 1.20115 1.47492 0.90305 0.90439 0.93830 1.27045 0.99421 1.03013 0.96838 1.70844 1.27352 1.21352 1.38466 0.82928 0.75250 0.73836 0.74448 1.19851 1.21998 1.21786 1.21027 0.93098 0.98683 0.85595 1.21852 1.01104 0.93486 0.98687 1.23588 1.02210 0.91721 0.95192 0.85247 1.23413 1.01067 0.86527 0.91394 1.88140 1.82407 1.14637 1.46087 1.23281 1.00432 0.89462 0.89207 1.22908 0.87451 0.97315 0.92107 0.88241 0.92437 0.87822 0.92650 0.91282 0.92081 0.89312 0.89563 0.90143 0.92509 0.91896 0.97051 0.95115 0.93416 0.93122 0.96124 0.88582 0.91299 0.89458 0.89201 0.91658 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.39 -10.83 9.93 -130.46 -1.30 -12.12 16 3 C 0.08 2.09 2.48 29.85 0.07 2.17 16 4 H 0.10 2.21 7.52 -2.39 -0.02 2.20 16 5 C -0.17 -4.38 9.34 71.98 0.67 -3.70 16 6 C 0.53 16.31 6.70 87.66 0.59 16.90 16 7 O -0.56 -21.30 16.56 15.50 0.26 -21.04 16 8 N -0.60 -16.03 2.98 -786.17 -2.35 -18.37 16 9 C 0.10 2.52 3.94 86.55 0.34 2.86 16 10 C -0.04 -1.01 0.37 -51.92 -0.02 -1.03 16 11 C -0.11 -3.43 4.90 30.43 0.15 -3.28 16 12 C 0.16 6.88 4.51 86.41 0.39 7.27 16 13 N -0.61 -27.18 2.73 -699.41 -1.91 -29.09 16 14 C -0.35 -18.40 9.39 84.03 0.79 -17.61 16 15 H 0.04 2.31 7.94 -2.91 -0.02 2.29 16 16 C -0.07 -3.51 4.66 84.86 0.40 -3.12 16 17 N -0.94 -54.40 12.70 21.65 0.28 -54.13 16 18 Si 1.11 49.09 29.98 68.60 2.06 51.15 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 C 0.14 4.92 6.22 86.25 0.54 5.46 16 23 C -0.11 -2.87 4.40 30.25 0.13 -2.73 16 24 C -0.11 -2.22 3.44 -9.18 -0.03 -2.25 16 25 H 0.13 2.29 8.13 -2.39 -0.02 2.27 16 26 C 0.05 0.99 6.47 72.26 0.47 1.46 16 27 O -0.39 -9.46 11.27 -148.98 -1.68 -11.13 16 28 C 0.05 1.27 7.37 72.26 0.53 1.80 16 29 C 0.11 2.54 3.34 46.09 0.15 2.69 16 30 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.06 0.89 8.04 -2.39 -0.02 0.87 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 34 H 0.07 1.96 5.05 -2.39 -0.01 1.95 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.97 8.04 -2.39 -0.02 1.95 16 37 H 0.09 1.91 7.45 -2.39 -0.02 1.90 16 38 H 0.08 2.27 3.69 -2.39 -0.01 2.26 16 39 H 0.06 1.75 7.84 -2.38 -0.02 1.74 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.01 0.49 5.56 -2.39 -0.01 0.48 16 42 H 0.03 1.52 6.81 -2.38 -0.02 1.51 16 43 H 0.26 14.95 7.05 -92.71 -0.65 14.29 16 44 H 0.05 1.83 7.93 -2.38 -0.02 1.81 16 45 H 0.02 0.71 7.64 -2.38 -0.02 0.69 16 46 H 0.10 1.88 5.56 -2.39 -0.01 1.87 16 47 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 48 H 0.09 1.61 4.61 -2.39 -0.01 1.60 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.81 7.43 -2.38 -0.02 1.80 16 51 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -68.98 377.20 2.81 -66.17 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.05 Total: 20.08 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.40 Total: 8.48 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -3.98 Total: -101.59 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.72 Total: -44.30 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.06 Total: 51.15 kcal Total: -68.98 2.81 -66.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079225905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.205 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds