Wall clock time and date at job start Tue Mar 31 2020 21:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99564 * 2 1 4 4 H 1.08999 * 109.47472 * 330.00177 * 3 2 1 5 5 C 1.53004 * 109.47003 * 90.00104 * 3 2 1 6 6 C 1.50700 * 109.47071 * 209.99528 * 3 2 1 7 7 O 1.21276 * 120.00099 * 0.02562 * 6 3 2 8 8 N 1.34781 * 120.00009 * 180.02562 * 6 3 2 9 9 C 1.47550 * 125.55119 * 0.02602 * 8 6 3 10 10 C 1.54093 * 104.75025 * 203.76596 * 9 8 6 11 11 C 1.52132 * 110.62168 * 81.52819 * 10 9 8 12 12 C 1.53332 * 109.45955 * 64.34523 * 11 10 9 13 13 N 1.46931 * 108.67992 * 53.35863 * 12 11 10 14 14 C 1.36937 * 120.56838 * 125.63901 * 13 12 11 15 15 H 1.08000 * 120.00024 * 208.05584 * 14 13 12 16 16 C 1.38815 * 119.99760 * 28.04413 * 14 13 12 17 17 N 1.31619 * 119.99966 * 25.49952 * 16 14 13 18 18 Si 1.86801 * 119.99835 * 205.49631 * 16 14 13 19 19 H 1.48497 * 109.47116 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47210 * 239.99966 * 18 16 14 21 21 H 1.48508 * 109.46797 * 120.00256 * 18 16 14 22 22 C 1.46939 * 118.87023 * 305.90639 * 13 12 11 23 23 C 1.52116 * 110.68071 * 205.69141 * 10 9 8 24 24 C 1.54385 * 102.64538 * 323.65529 * 10 9 8 25 25 H 1.09003 * 113.34087 * 157.34638 * 24 10 9 26 26 C 1.53816 * 108.68375 * 285.15250 * 24 10 9 27 27 O 1.42778 * 108.43681 * 123.18800 * 26 24 10 28 28 C 1.42908 * 110.69157 * 1.82721 * 27 26 24 29 29 C 1.46755 * 125.55446 * 180.02562 * 8 6 3 30 30 H 1.08996 * 111.72243 * 54.60219 * 29 8 6 31 31 H 1.08998 * 109.47840 * 299.99654 * 1 2 3 32 32 H 1.09001 * 109.47505 * 59.99996 * 1 2 3 33 33 H 1.09005 * 109.46580 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46863 * 299.99772 * 5 3 2 35 35 H 1.08992 * 109.47321 * 59.99672 * 5 3 2 36 36 H 1.08998 * 109.47105 * 179.97438 * 5 3 2 37 37 H 1.09004 * 110.37723 * 84.94691 * 9 8 6 38 38 H 1.09004 * 110.47875 * 322.63381 * 9 8 6 39 39 H 1.09001 * 109.47563 * 304.34656 * 11 10 9 40 40 H 1.09003 * 109.47395 * 184.33878 * 11 10 9 41 41 H 1.08999 * 109.59679 * 293.60406 * 12 11 10 42 42 H 1.09000 * 109.60323 * 173.11860 * 12 11 10 43 43 H 0.96999 * 120.00068 * 4.17679 * 17 16 14 44 44 H 1.08993 * 109.59793 * 173.83554 * 22 13 12 45 45 H 1.09002 * 109.59587 * 294.30276 * 22 13 12 46 46 H 1.09002 * 109.47037 * 55.65370 * 23 10 9 47 47 H 1.08992 * 109.47293 * 175.65401 * 23 10 9 48 48 H 1.08998 * 109.68905 * 3.42102 * 26 24 10 49 49 H 1.08992 * 109.62493 * 242.92034 * 26 24 10 50 50 H 1.09001 * 109.89075 * 222.66980 * 28 27 26 51 51 H 1.09000 * 109.89636 * 101.46485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9995 -0.5138 5 6 2.2175 1.7715 1.4425 6 6 3.3386 1.2641 -0.7103 7 8 3.7472 0.2195 -1.1715 8 7 4.0725 2.3878 -0.8330 9 6 3.6955 3.7190 -0.3203 10 6 4.4827 4.7137 -1.1951 11 6 3.7675 4.9468 -2.5175 12 6 2.4148 5.6193 -2.2550 13 7 2.6375 6.8232 -1.4426 14 6 2.1716 8.0412 -1.8602 15 1 2.6780 8.9458 -1.5575 16 6 1.0485 8.1132 -2.6729 17 7 0.1536 7.1483 -2.6457 18 14 0.8071 9.5794 -3.8048 19 1 1.9470 10.5183 -3.6486 20 1 -0.4580 10.2732 -3.4534 21 1 0.7407 9.1120 -5.2129 22 6 3.3740 6.6988 -0.1772 23 6 4.7156 6.0183 -0.4484 24 6 5.8191 3.9762 -1.4265 25 1 6.3518 4.3160 -2.3147 26 6 6.6506 4.0460 -0.1343 27 8 6.9645 2.7141 0.2731 28 6 6.4479 1.7649 -0.6621 29 6 5.3769 2.4867 -1.4982 30 1 5.3383 2.1094 -2.5200 31 1 -0.3635 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2566 1.8015 1.9563 35 1 2.8827 1.0776 1.9564 36 1 2.6612 2.7671 1.4426 37 1 3.9870 3.8196 0.7252 38 1 2.6234 3.8811 -0.4321 39 1 3.6075 3.9915 -3.0174 40 1 4.3767 5.5911 -3.1515 41 1 1.7625 4.9310 -1.7176 42 1 1.9549 5.8979 -3.2031 43 1 0.2475 6.4174 -2.0151 44 1 3.5466 7.6891 0.2442 45 1 2.7968 6.0961 0.5240 46 1 5.2172 5.8113 0.4970 47 1 5.3385 6.6771 -1.0534 48 1 6.0748 4.5427 0.6465 49 1 7.5708 4.5996 -0.3206 50 1 5.9999 0.9259 -0.1298 51 1 7.2485 1.4103 -1.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079225906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:11 Heat of formation + Delta-G solvation = -85.549754 kcal Electronic energy + Delta-G solvation = -32815.933136 eV Core-core repulsion = 28716.572640 eV Total energy + Delta-G solvation = -4099.360496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.66467 -39.37985 -37.95335 -37.44571 -35.64564 -33.70494 -32.25602 -31.10539 -30.57203 -29.79101 -28.35584 -26.99943 -26.56475 -24.85728 -24.13666 -23.43058 -22.17139 -21.80728 -20.45449 -19.43848 -18.49810 -17.75237 -17.37283 -16.62014 -16.40324 -16.15107 -15.82280 -15.22957 -15.02419 -14.91608 -14.63613 -14.23284 -13.95506 -13.91840 -13.56962 -13.45345 -13.31619 -13.13829 -12.86688 -12.73380 -12.41224 -12.20366 -12.06670 -11.99163 -11.85641 -11.64316 -11.48392 -11.34853 -11.26046 -10.99297 -10.76802 -10.54389 -10.40732 -10.15658 -10.12331 -9.99330 -9.87696 -9.55912 -9.43583 -9.33307 -8.70697 -8.44339 -6.98033 -6.18476 -3.32835 2.52801 2.61212 3.45301 3.47201 3.60701 3.71896 3.81685 4.05407 4.36529 4.49575 4.50569 4.75872 4.78128 4.83882 4.87195 4.91294 4.99625 5.13867 5.17733 5.19821 5.26283 5.27098 5.36264 5.40835 5.44973 5.54107 5.55418 5.60180 5.62377 5.67698 5.72063 5.74681 5.81426 5.87730 5.95100 6.01369 6.15009 6.20734 6.32759 6.36821 6.40035 6.57673 6.64662 6.88794 6.90657 6.97486 7.04459 7.40891 7.92575 8.10501 8.47964 9.00707 9.74491 10.17889 11.11787 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.004425 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.678579 B = 6326.801380 C = 7972.041949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.073 3.927 4 H 0.090 0.910 5 C -0.177 4.177 6 C 0.535 3.465 7 O -0.524 6.524 8 N -0.604 5.604 9 C 0.103 3.897 10 C -0.046 4.046 11 C -0.122 4.122 12 C 0.152 3.848 13 N -0.596 5.596 14 C -0.351 4.351 15 H 0.057 0.943 16 C -0.022 4.022 17 N -0.916 5.916 18 Si 1.068 2.932 19 H -0.292 1.292 20 H -0.294 1.294 21 H -0.290 1.290 22 C 0.147 3.853 23 C -0.127 4.127 24 C -0.123 4.123 25 H 0.111 0.889 26 C 0.051 3.949 27 O -0.380 6.380 28 C 0.047 3.953 29 C 0.114 3.886 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.015 0.985 42 H 0.081 0.919 43 H 0.268 0.732 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -8.673 5.817 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.012 3.988 4 H 0.108 0.892 5 C -0.234 4.234 6 C 0.322 3.678 7 O -0.399 6.399 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.047 4.047 11 C -0.161 4.161 12 C 0.026 3.974 13 N -0.320 5.320 14 C -0.480 4.480 15 H 0.075 0.925 16 C -0.224 4.224 17 N -0.556 5.556 18 Si 0.898 3.102 19 H -0.218 1.218 20 H -0.221 1.221 21 H -0.217 1.217 22 C 0.021 3.979 23 C -0.166 4.166 24 C -0.142 4.142 25 H 0.130 0.870 26 C -0.024 4.024 27 O -0.300 6.300 28 C -0.030 4.030 29 C 0.010 3.990 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.905 -8.867 4.596 12.142 hybrid contribution 0.634 -0.302 0.942 1.175 sum 7.539 -9.169 5.538 13.099 Atomic orbital electron populations 1.22892 0.80443 1.03105 1.00398 1.88001 1.19821 1.25145 1.94982 1.21847 0.93233 0.86842 0.96855 0.89211 1.22359 1.03538 1.02682 0.94835 1.20040 0.85558 0.82400 0.79764 1.90699 1.71507 1.29599 1.48143 1.48338 1.19813 1.08900 1.56908 1.22658 1.01164 0.80538 0.97517 1.21007 0.92396 0.94362 0.96964 1.21918 0.99831 0.99927 0.94466 1.20973 0.92042 0.87576 0.96791 1.44100 1.64758 1.05133 1.18035 1.19998 1.09964 0.84659 1.33396 0.92548 1.25827 0.91038 1.03816 1.01752 1.70756 1.32028 1.13705 1.39063 0.83486 0.75230 0.74947 0.76558 1.21792 1.22080 1.21684 1.20835 0.90211 0.98095 0.88785 1.21990 1.00503 0.95066 0.99013 1.23618 0.97405 0.93789 0.99408 0.87041 1.23310 0.98678 0.84621 0.95839 1.88153 1.78301 1.15034 1.48470 1.23367 0.95049 0.92664 0.91931 1.22762 0.83263 0.95588 0.97362 0.88142 0.93728 0.93566 0.89187 0.91086 0.91247 0.90249 0.90976 0.89390 0.92943 0.91629 0.96729 0.90081 0.92079 0.92343 0.96657 0.91832 0.91266 0.89845 0.91381 0.89626 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.36 -5.18 9.88 -55.14 -0.54 -5.73 16 3 C 0.07 0.99 2.49 -27.88 -0.07 0.92 16 4 H 0.09 1.14 7.49 -51.93 -0.39 0.75 16 5 C -0.18 -1.98 9.34 37.16 0.35 -1.63 16 6 C 0.53 8.31 6.92 -10.98 -0.08 8.24 16 7 O -0.52 -9.81 16.30 -14.35 -0.23 -10.05 16 8 N -0.60 -8.38 2.98 -162.38 -0.48 -8.86 16 9 C 0.10 1.38 2.66 -2.90 -0.01 1.37 16 10 C -0.05 -0.64 0.37 -154.10 -0.06 -0.69 16 11 C -0.12 -2.01 4.89 -27.00 -0.13 -2.14 16 12 C 0.15 3.16 4.38 -3.64 -0.02 3.15 16 13 N -0.60 -13.30 2.84 -172.42 -0.49 -13.79 16 14 C -0.35 -9.09 9.48 -15.06 -0.14 -9.23 16 15 H 0.06 1.48 7.95 -52.49 -0.42 1.07 16 16 C -0.02 -0.59 4.67 -17.43 -0.08 -0.67 16 17 N -0.92 -25.92 12.45 55.49 0.69 -25.23 16 18 Si 1.07 24.20 29.99 -169.99 -5.10 19.10 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.15 2.65 6.22 -3.88 -0.02 2.63 16 23 C -0.13 -1.79 4.40 -27.25 -0.12 -1.91 16 24 C -0.12 -1.46 3.44 -88.12 -0.30 -1.77 16 25 H 0.11 1.21 8.13 -51.93 -0.42 0.79 16 26 C 0.05 0.60 6.46 37.58 0.24 0.84 16 27 O -0.38 -5.16 11.27 -35.23 -0.40 -5.55 16 28 C 0.05 0.61 7.34 37.60 0.28 0.89 16 29 C 0.11 1.48 3.36 -66.00 -0.22 1.26 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.39 7.87 -51.93 -0.41 -0.01 16 32 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.86 4.98 -51.93 -0.26 0.60 16 37 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 38 H 0.09 1.27 5.43 -51.93 -0.28 0.99 16 39 H 0.05 0.83 7.83 -51.93 -0.41 0.43 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.01 0.31 6.33 -51.93 -0.33 -0.02 16 42 H 0.08 1.98 6.30 -51.93 -0.33 1.65 16 43 H 0.27 7.57 6.70 -40.82 -0.27 7.30 16 44 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.02 0.27 7.64 -51.93 -0.40 -0.12 16 46 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 0.96 4.61 -51.93 -0.24 0.72 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 1.24 7.30 -51.93 -0.38 0.86 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -31.27 375.61 -8.33 -39.59 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.14 Total: 2.25 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.71 Total: 2.61 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.28 Total: -47.88 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.18 Total: -21.33 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.10 Total: 19.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.27 -8.33 -39.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079225906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.955 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds