Wall clock time and date at job start Tue Mar 31 2020 21:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99564 * 2 1 4 4 H 1.08999 * 109.47472 * 330.00177 * 3 2 1 5 5 C 1.53004 * 109.47003 * 90.00104 * 3 2 1 6 6 C 1.50700 * 109.47071 * 209.99528 * 3 2 1 7 7 O 1.21276 * 120.00099 * 0.02562 * 6 3 2 8 8 N 1.34781 * 120.00009 * 180.02562 * 6 3 2 9 9 C 1.47550 * 125.55119 * 0.02602 * 8 6 3 10 10 C 1.54093 * 104.75025 * 203.76596 * 9 8 6 11 11 C 1.52132 * 110.62168 * 81.52819 * 10 9 8 12 12 C 1.53332 * 109.45955 * 64.34523 * 11 10 9 13 13 N 1.46931 * 108.67992 * 53.35863 * 12 11 10 14 14 C 1.36937 * 120.56838 * 125.63901 * 13 12 11 15 15 H 1.08000 * 120.00024 * 208.05584 * 14 13 12 16 16 C 1.38815 * 119.99760 * 28.04413 * 14 13 12 17 17 N 1.31619 * 119.99966 * 25.49952 * 16 14 13 18 18 Si 1.86801 * 119.99835 * 205.49631 * 16 14 13 19 19 H 1.48497 * 109.47116 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47210 * 239.99966 * 18 16 14 21 21 H 1.48508 * 109.46797 * 120.00256 * 18 16 14 22 22 C 1.46939 * 118.87023 * 305.90639 * 13 12 11 23 23 C 1.52116 * 110.68071 * 205.69141 * 10 9 8 24 24 C 1.54385 * 102.64538 * 323.65529 * 10 9 8 25 25 H 1.09003 * 113.34087 * 157.34638 * 24 10 9 26 26 C 1.53816 * 108.68375 * 285.15250 * 24 10 9 27 27 O 1.42778 * 108.43681 * 123.18800 * 26 24 10 28 28 C 1.42908 * 110.69157 * 1.82721 * 27 26 24 29 29 C 1.46755 * 125.55446 * 180.02562 * 8 6 3 30 30 H 1.08996 * 111.72243 * 54.60219 * 29 8 6 31 31 H 1.08998 * 109.47840 * 299.99654 * 1 2 3 32 32 H 1.09001 * 109.47505 * 59.99996 * 1 2 3 33 33 H 1.09005 * 109.46580 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46863 * 299.99772 * 5 3 2 35 35 H 1.08992 * 109.47321 * 59.99672 * 5 3 2 36 36 H 1.08998 * 109.47105 * 179.97438 * 5 3 2 37 37 H 1.09004 * 110.37723 * 84.94691 * 9 8 6 38 38 H 1.09004 * 110.47875 * 322.63381 * 9 8 6 39 39 H 1.09001 * 109.47563 * 304.34656 * 11 10 9 40 40 H 1.09003 * 109.47395 * 184.33878 * 11 10 9 41 41 H 1.08999 * 109.59679 * 293.60406 * 12 11 10 42 42 H 1.09000 * 109.60323 * 173.11860 * 12 11 10 43 43 H 0.96999 * 120.00068 * 4.17679 * 17 16 14 44 44 H 1.08993 * 109.59793 * 173.83554 * 22 13 12 45 45 H 1.09002 * 109.59587 * 294.30276 * 22 13 12 46 46 H 1.09002 * 109.47037 * 55.65370 * 23 10 9 47 47 H 1.08992 * 109.47293 * 175.65401 * 23 10 9 48 48 H 1.08998 * 109.68905 * 3.42102 * 26 24 10 49 49 H 1.08992 * 109.62493 * 242.92034 * 26 24 10 50 50 H 1.09001 * 109.89075 * 222.66980 * 28 27 26 51 51 H 1.09000 * 109.89636 * 101.46485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9995 -0.5138 5 6 2.2175 1.7715 1.4425 6 6 3.3386 1.2641 -0.7103 7 8 3.7472 0.2195 -1.1715 8 7 4.0725 2.3878 -0.8330 9 6 3.6955 3.7190 -0.3203 10 6 4.4827 4.7137 -1.1951 11 6 3.7675 4.9468 -2.5175 12 6 2.4148 5.6193 -2.2550 13 7 2.6375 6.8232 -1.4426 14 6 2.1716 8.0412 -1.8602 15 1 2.6780 8.9458 -1.5575 16 6 1.0485 8.1132 -2.6729 17 7 0.1536 7.1483 -2.6457 18 14 0.8071 9.5794 -3.8048 19 1 1.9470 10.5183 -3.6486 20 1 -0.4580 10.2732 -3.4534 21 1 0.7407 9.1120 -5.2129 22 6 3.3740 6.6988 -0.1772 23 6 4.7156 6.0183 -0.4484 24 6 5.8191 3.9762 -1.4265 25 1 6.3518 4.3160 -2.3147 26 6 6.6506 4.0460 -0.1343 27 8 6.9645 2.7141 0.2731 28 6 6.4479 1.7649 -0.6621 29 6 5.3769 2.4867 -1.4982 30 1 5.3383 2.1094 -2.5200 31 1 -0.3635 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2566 1.8015 1.9563 35 1 2.8827 1.0776 1.9564 36 1 2.6612 2.7671 1.4426 37 1 3.9870 3.8196 0.7252 38 1 2.6234 3.8811 -0.4321 39 1 3.6075 3.9915 -3.0174 40 1 4.3767 5.5911 -3.1515 41 1 1.7625 4.9310 -1.7176 42 1 1.9549 5.8979 -3.2031 43 1 0.2475 6.4174 -2.0151 44 1 3.5466 7.6891 0.2442 45 1 2.7968 6.0961 0.5240 46 1 5.2172 5.8113 0.4970 47 1 5.3385 6.6771 -1.0534 48 1 6.0748 4.5427 0.6465 49 1 7.5708 4.5996 -0.3206 50 1 5.9999 0.9259 -0.1298 51 1 7.2485 1.4103 -1.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079225906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:10 Heat of formation + Delta-G solvation = -105.239497 kcal Electronic energy + Delta-G solvation = -32816.786947 eV Core-core repulsion = 28716.572640 eV Total energy + Delta-G solvation = -4100.214307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.77558 -40.51778 -39.24651 -38.51533 -37.02974 -35.16169 -33.44872 -32.52646 -32.01210 -30.91233 -29.58673 -28.01695 -27.67752 -26.43757 -25.21576 -24.73137 -23.56405 -22.99625 -21.74867 -20.57596 -19.93538 -19.16383 -18.71985 -17.60895 -17.49193 -17.29264 -16.91457 -16.24942 -16.19752 -16.13537 -15.99091 -15.69069 -15.46541 -15.17667 -15.07248 -14.79780 -14.53074 -14.31522 -13.92802 -13.80459 -13.55802 -13.40082 -13.25135 -13.06431 -12.97776 -12.85196 -12.75317 -12.63436 -12.46781 -12.38581 -12.20942 -11.98114 -11.88109 -11.66633 -11.61612 -11.24451 -11.16172 -11.01914 -10.63928 -10.42796 -10.37917 -9.84478 -8.85598 -8.21832 -5.34314 1.35736 1.52762 1.60637 1.66643 1.82400 2.66915 2.72453 2.84086 3.03531 3.20216 3.31668 3.43413 3.56494 3.68393 3.77706 3.80364 3.88382 3.94030 3.95764 4.09167 4.20441 4.31078 4.38886 4.39396 4.44088 4.45407 4.49107 4.55964 4.61914 4.62784 4.65285 4.68942 4.76993 4.77193 4.83212 4.88149 4.97962 5.02063 5.07679 5.12034 5.18937 5.21845 5.23881 5.29771 5.52301 5.91189 5.93549 6.01753 6.27416 6.44789 6.93028 7.11561 7.82883 8.26952 9.05295 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.004425 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.678579 B = 6326.801380 C = 7972.041949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.072 3.928 4 H 0.093 0.907 5 C -0.169 4.169 6 C 0.528 3.472 7 O -0.563 6.563 8 N -0.600 5.600 9 C 0.107 3.893 10 C -0.042 4.042 11 C -0.108 4.108 12 C 0.161 3.839 13 N -0.613 5.613 14 C -0.349 4.349 15 H 0.051 0.949 16 C -0.073 4.073 17 N -0.946 5.946 18 Si 1.111 2.889 19 H -0.273 1.273 20 H -0.294 1.294 21 H -0.292 1.292 22 C 0.141 3.859 23 C -0.113 4.113 24 C -0.108 4.108 25 H 0.129 0.871 26 C 0.051 3.949 27 O -0.393 6.393 28 C 0.054 3.946 29 C 0.106 3.894 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.008 0.992 42 H 0.038 0.962 43 H 0.256 0.744 44 H 0.052 0.948 45 H 0.023 0.977 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.066 0.934 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.279 -8.145 6.752 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.307 6.307 3 C 0.011 3.989 4 H 0.110 0.890 5 C -0.226 4.226 6 C 0.317 3.683 7 O -0.441 6.441 8 N -0.334 5.334 9 C -0.015 4.015 10 C -0.043 4.043 11 C -0.147 4.147 12 C 0.035 3.965 13 N -0.338 5.338 14 C -0.479 4.479 15 H 0.068 0.932 16 C -0.270 4.270 17 N -0.588 5.588 18 Si 0.937 3.063 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.219 1.219 22 C 0.016 3.984 23 C -0.152 4.152 24 C -0.127 4.127 25 H 0.147 0.853 26 C -0.024 4.024 27 O -0.312 6.312 28 C -0.024 4.024 29 C 0.003 3.997 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.106 0.894 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.683 -8.320 5.559 13.248 hybrid contribution 0.081 -0.478 0.696 0.848 sum 8.763 -8.798 6.255 13.904 Atomic orbital electron populations 1.23099 0.78669 1.04444 1.01160 1.87964 1.21841 1.25719 1.95176 1.21925 0.92153 0.86808 0.97970 0.88974 1.22315 1.04452 1.02549 0.93315 1.20494 0.86222 0.82170 0.79376 1.90669 1.72557 1.30987 1.49937 1.48361 1.19998 1.08656 1.56387 1.22656 1.00428 0.80055 0.98365 1.20888 0.93427 0.94664 0.95331 1.21698 0.97407 0.99350 0.96206 1.20771 0.94025 0.87245 0.94461 1.44297 1.65090 1.04419 1.19970 1.20212 1.09147 0.85961 1.32546 0.93171 1.26947 0.91225 1.05446 1.03371 1.70861 1.33446 1.14536 1.39951 0.82893 0.75654 0.72895 0.74836 1.19817 1.22149 1.21867 1.21015 0.91749 0.98529 0.87059 1.21855 0.98118 0.94463 1.00716 1.23587 0.96235 0.92197 1.00684 0.85295 1.23416 0.99664 0.84001 0.95323 1.88146 1.78349 1.15826 1.48902 1.23279 0.95330 0.92055 0.91715 1.22916 0.82905 0.96583 0.97342 0.88258 0.92031 0.93692 0.87672 0.89396 0.91702 0.89753 0.89151 0.90655 0.92572 0.91974 0.97421 0.94341 0.93395 0.92969 0.95911 0.88448 0.91297 0.89390 0.89218 0.91608 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.67 16 2 O -0.39 -11.06 9.88 -129.94 -1.28 -12.34 16 3 C 0.07 1.92 2.49 29.85 0.07 1.99 16 4 H 0.09 2.34 7.49 -2.39 -0.02 2.33 16 5 C -0.17 -3.56 9.34 71.98 0.67 -2.88 16 6 C 0.53 16.32 6.92 87.66 0.61 16.93 16 7 O -0.56 -21.35 16.30 16.02 0.26 -21.09 16 8 N -0.60 -15.92 2.98 -786.04 -2.34 -18.26 16 9 C 0.11 2.63 2.66 86.55 0.23 2.86 16 10 C -0.04 -1.05 0.37 -51.92 -0.02 -1.07 16 11 C -0.11 -3.43 4.89 30.42 0.15 -3.28 16 12 C 0.16 6.77 4.38 86.41 0.38 7.15 16 13 N -0.61 -27.23 2.84 -699.43 -1.99 -29.22 16 14 C -0.35 -18.11 9.48 84.03 0.80 -17.31 16 15 H 0.05 2.63 7.95 -2.91 -0.02 2.60 16 16 C -0.07 -3.96 4.67 84.86 0.40 -3.56 16 17 N -0.95 -54.97 12.45 21.65 0.27 -54.70 16 18 Si 1.11 49.17 29.99 68.60 2.06 51.23 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 C 0.14 4.86 6.22 86.25 0.54 5.40 16 23 C -0.11 -2.83 4.40 30.26 0.13 -2.70 16 24 C -0.11 -2.21 3.44 -9.17 -0.03 -2.24 16 25 H 0.13 2.28 8.13 -2.39 -0.02 2.26 16 26 C 0.05 0.98 6.46 72.26 0.47 1.45 16 27 O -0.39 -9.44 11.27 -148.98 -1.68 -11.12 16 28 C 0.05 1.28 7.34 72.27 0.53 1.81 16 29 C 0.11 2.55 3.36 46.10 0.15 2.70 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 32 H 0.04 0.90 8.09 -2.39 -0.02 0.88 16 33 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 1.54 7.87 -2.39 -0.02 1.52 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.66 4.98 -2.39 -0.01 1.65 16 37 H 0.09 1.95 6.35 -2.38 -0.02 1.94 16 38 H 0.08 2.10 5.43 -2.39 -0.01 2.09 16 39 H 0.06 1.75 7.83 -2.39 -0.02 1.73 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.01 0.34 6.33 -2.39 -0.02 0.33 16 42 H 0.04 1.94 6.30 -2.39 -0.02 1.92 16 43 H 0.26 14.98 6.70 -92.71 -0.62 14.35 16 44 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 45 H 0.02 0.76 7.64 -2.39 -0.02 0.74 16 46 H 0.10 1.86 5.57 -2.39 -0.01 1.84 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.09 1.59 4.61 -2.39 -0.01 1.58 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 1.85 7.30 -2.39 -0.02 1.84 16 51 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.29 375.61 2.68 -66.61 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.08 Total: 19.98 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.30 Total: 8.91 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.06 Total: -102.17 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.70 Total: -44.55 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.06 Total: 51.23 kcal Total: -69.29 2.68 -66.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079225906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.632 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds