Wall clock time and date at job start Tue Mar 31 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00094 * 2 1 4 4 O 1.42895 * 109.47019 * 135.00115 * 3 2 1 5 5 C 1.42904 * 113.99818 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47319 * 29.99702 * 5 4 3 7 7 C 1.53007 * 109.46679 * 270.00022 * 5 4 3 8 8 C 1.50696 * 109.47034 * 150.00410 * 5 4 3 9 9 O 1.21285 * 120.00397 * 4.99403 * 8 5 4 10 10 N 1.34774 * 120.00031 * 184.99726 * 8 5 4 11 11 C 1.46924 * 120.63414 * 179.97438 * 10 8 5 12 12 C 1.53186 * 108.77928 * 233.58746 * 11 10 8 13 13 C 1.53043 * 109.31566 * 305.36857 * 12 11 10 14 14 O 1.42898 * 109.45974 * 181.38490 * 13 12 11 15 15 C 1.42898 * 114.00084 * 149.99873 * 14 13 12 16 16 C 1.53495 * 114.20802 * 209.99948 * 15 14 13 17 17 N 1.47066 * 87.98658 * 220.14499 * 16 15 14 18 18 C 1.36937 * 136.06113 * 206.85859 * 17 16 15 19 19 H 1.07995 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99557 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47001 * 120.00359 * 22 20 18 25 25 H 1.48499 * 109.47209 * 240.00202 * 22 20 18 26 26 C 1.47067 * 87.88528 * 27.11900 * 17 16 15 27 27 C 1.53038 * 109.53640 * 61.36211 * 13 12 11 28 28 C 1.46935 * 120.62989 * 359.97438 * 10 8 5 29 29 H 1.07999 * 119.99777 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99799 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00113 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46596 * 15.00175 * 3 2 1 33 33 H 1.08991 * 109.47245 * 255.00672 * 3 2 1 34 34 H 1.08998 * 109.46695 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.46983 * 299.99885 * 7 5 4 36 36 H 1.09000 * 109.46998 * 60.00299 * 7 5 4 37 37 H 1.09001 * 109.58519 * 113.79950 * 11 10 8 38 38 H 1.09002 * 109.58747 * 353.38309 * 11 10 8 39 39 H 1.09003 * 109.50061 * 185.41682 * 12 11 10 40 40 H 1.08999 * 109.49663 * 65.31873 * 12 11 10 41 41 H 1.09003 * 109.45562 * 301.35654 * 13 12 11 42 42 H 1.09006 * 113.28061 * 343.06477 * 15 14 13 43 43 H 1.09005 * 113.46950 * 105.37065 * 16 15 14 44 44 H 1.08994 * 113.52293 * 334.93549 * 16 15 14 45 45 H 0.96999 * 119.99537 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.46858 * 87.65629 * 26 17 16 47 47 H 1.08993 * 113.47208 * 218.09965 * 26 17 16 48 48 H 1.08998 * 109.49599 * 58.59280 * 27 13 12 49 49 H 1.09005 * 109.49168 * 178.68786 * 27 13 12 50 50 H 1.09006 * 109.58220 * 246.19859 * 28 10 8 51 51 H 1.09000 * 109.58458 * 6.47415 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9078 2.4353 1.0328 6 1 3.2834 3.2949 0.7893 7 6 5.0700 2.3519 0.0412 8 6 4.4500 2.5879 2.4305 9 8 4.2694 1.7123 3.2501 10 7 5.1356 3.6975 2.7699 11 6 5.6699 3.8610 4.1288 12 6 5.1781 5.1969 4.6946 13 6 5.5553 6.3244 3.7310 14 8 5.1263 7.5758 4.2713 15 6 5.9418 8.6847 3.8876 16 6 5.9995 9.8129 4.9268 17 7 5.9307 10.7715 3.8137 18 6 6.3436 12.0585 3.5937 19 1 6.8625 12.5995 4.3712 20 6 6.0961 12.6675 2.3710 21 7 5.4642 12.0080 1.4234 22 14 6.6600 14.4229 2.0708 23 1 7.3422 14.9382 3.2850 24 1 7.6034 14.4505 0.9243 25 1 5.4833 15.2752 1.7643 26 6 5.2174 9.7420 3.0429 27 6 4.8748 6.0922 2.3801 28 6 5.3630 4.7667 1.7880 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3855 2.1160 0.2660 33 1 2.4754 1.4869 -0.9926 34 1 5.6660 3.2625 0.1027 35 1 5.6944 1.4923 0.2846 36 1 4.6778 2.2415 -0.9698 37 1 6.7594 3.8571 4.0959 38 1 5.3185 3.0450 4.7603 39 1 5.6443 5.3753 5.6636 40 1 4.0949 5.1656 4.8117 41 1 6.6367 6.3392 3.5949 42 1 6.9146 8.3886 3.4949 43 1 6.9412 9.8508 5.4746 44 1 5.1292 9.8456 5.5822 45 1 5.2909 12.4337 0.5692 46 1 4.1382 9.7550 3.1959 47 1 5.4939 9.7194 1.9888 48 1 3.7944 6.0525 2.5190 49 1 5.1252 6.9078 1.7017 50 1 6.4275 4.8367 1.5641 51 1 4.8111 4.5469 0.8742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105735813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:09 Heat of formation + Delta-G solvation = -35.690257 kcal Electronic energy + Delta-G solvation = -29745.452393 eV Core-core repulsion = 25648.253967 eV Total energy + Delta-G solvation = -4097.198426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71478 -39.03676 -38.27332 -37.28331 -35.57005 -34.46531 -32.75863 -32.06953 -31.27132 -30.57997 -27.57217 -26.68447 -25.58383 -24.62857 -23.79611 -23.46074 -22.79159 -21.03378 -20.45900 -19.72069 -19.17890 -17.84401 -17.06041 -16.84375 -16.50700 -16.20263 -16.07865 -15.29226 -15.05970 -15.00536 -14.70243 -14.41144 -14.19613 -13.91496 -13.87170 -13.68525 -13.27535 -13.04726 -12.93963 -12.65609 -12.63532 -12.31127 -12.06576 -11.98040 -11.83796 -11.74350 -11.40364 -11.29651 -11.20564 -11.12042 -10.94966 -10.68428 -10.50202 -10.40414 -10.32088 -10.05750 -9.94437 -9.56170 -9.52330 -8.92618 -8.86732 -8.66290 -6.94994 -5.83206 -3.16102 1.74604 2.37360 2.50987 3.34992 3.40169 3.43049 3.49476 3.89492 4.12416 4.42011 4.44125 4.53751 4.55626 4.70131 4.74970 4.75156 4.85636 4.91986 5.04149 5.08421 5.11245 5.18437 5.25313 5.29046 5.29634 5.35958 5.39493 5.44856 5.47766 5.59538 5.61458 5.68595 5.72655 5.75664 5.87741 6.07147 6.16358 6.17973 6.24052 6.31794 6.42109 6.55655 6.62271 6.71544 7.04846 7.12321 7.16814 7.47097 7.83034 7.92471 7.94764 8.97784 9.63683 10.57187 11.34524 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002064 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.651808 B =13559.693530 C =14499.440663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.071 3.929 6 H 0.088 0.912 7 C -0.179 4.179 8 C 0.519 3.481 9 O -0.522 6.522 10 N -0.610 5.610 11 C 0.116 3.884 12 C -0.132 4.132 13 C 0.093 3.907 14 O -0.369 6.369 15 C 0.029 3.971 16 C 0.117 3.883 17 N -0.606 5.606 18 C -0.215 4.215 19 H 0.084 0.916 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.915 3.085 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.143 3.857 27 C -0.160 4.160 28 C 0.102 3.898 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.254 0.746 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -22.422 -3.813 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.009 3.991 4 O -0.272 6.272 5 C 0.009 3.991 6 H 0.106 0.894 7 C -0.237 4.237 8 C 0.306 3.694 9 O -0.397 6.397 10 N -0.345 5.345 11 C -0.006 4.006 12 C -0.170 4.170 13 C 0.035 3.965 14 O -0.286 6.286 15 C -0.029 4.029 16 C -0.009 4.009 17 N -0.334 5.334 18 C -0.342 4.342 19 H 0.102 0.898 20 C -0.206 4.206 21 N -0.566 5.566 22 Si 0.746 3.254 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.017 3.983 27 C -0.198 4.198 28 C -0.020 4.020 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.094 0.906 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.102 -22.740 -3.319 23.190 hybrid contribution 0.237 1.362 -0.630 1.519 sum -2.865 -21.378 -3.949 21.928 Atomic orbital electron populations 1.23858 0.95537 1.02399 0.99787 1.22687 0.95613 0.98047 1.00459 1.21684 0.88664 0.96326 0.92475 1.88066 1.44216 1.34482 1.60404 1.21879 0.94168 0.89682 0.93348 0.89416 1.22435 0.98102 1.04123 0.99026 1.20322 0.78101 0.81659 0.89345 1.90710 1.57038 1.40345 1.51592 1.48101 1.55124 1.18455 1.12867 1.21611 0.98295 0.98145 0.82514 1.22007 1.02981 0.92704 0.99298 1.21989 0.97449 0.85003 0.92084 1.87933 1.54034 1.14647 1.72025 1.24780 0.94173 0.84609 0.99379 1.22601 0.98679 0.87391 0.92253 1.45262 1.65168 1.11414 1.11561 1.18965 1.30468 0.86433 0.98383 0.89847 1.24832 1.00733 0.98722 0.96288 1.69847 1.45489 1.36391 1.04918 0.85991 0.77829 0.83806 0.77820 1.20348 1.21634 1.21657 1.22523 0.94638 0.83745 0.97367 1.22504 1.02240 0.96740 0.98321 1.22006 1.01828 0.86648 0.91567 0.87692 0.88335 0.86479 0.92484 0.92017 0.90064 0.90970 0.91028 0.91113 0.88507 0.89821 0.90701 0.92178 0.89686 0.94017 0.94143 0.93646 0.95116 0.91137 0.90607 0.89409 0.90592 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 14.31 29.01 0.42 -0.78 16 2 C -0.15 -1.19 9.89 -36.02 -0.36 -1.55 16 3 C 0.08 0.69 6.16 36.01 0.22 0.91 16 4 O -0.35 -4.01 9.51 -55.09 -0.52 -4.53 16 5 C 0.07 0.67 2.30 -27.88 -0.06 0.60 16 6 H 0.09 0.67 7.08 -51.93 -0.37 0.30 16 7 C -0.18 -1.27 9.10 37.16 0.34 -0.93 16 8 C 0.52 6.33 7.12 -10.99 -0.08 6.25 16 9 O -0.52 -8.49 15.92 -14.31 -0.23 -8.71 16 10 N -0.61 -6.29 2.97 -172.78 -0.51 -6.81 16 11 C 0.12 1.18 6.43 -3.72 -0.02 1.15 16 12 C -0.13 -1.44 5.73 -26.61 -0.15 -1.60 16 13 C 0.09 1.16 2.56 -26.69 -0.07 1.10 16 14 O -0.37 -6.12 10.05 -35.23 -0.35 -6.47 16 15 C 0.03 0.55 4.61 -26.22 -0.12 0.43 16 16 C 0.12 2.47 8.52 -8.51 -0.07 2.40 16 17 N -0.61 -15.70 3.78 -184.80 -0.70 -16.40 16 18 C -0.22 -6.03 10.75 -15.06 -0.16 -6.19 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -26.95 11.51 55.49 0.64 -26.31 16 22 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 C 0.14 3.37 7.25 -8.51 -0.06 3.30 16 27 C -0.16 -1.77 5.69 -26.63 -0.15 -1.92 16 28 C 0.10 0.87 4.97 -3.72 -0.02 0.85 16 29 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 31 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.06 0.42 7.80 -51.93 -0.41 0.02 16 33 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.08 0.47 5.41 -51.93 -0.28 0.19 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.08 7.01 -51.93 -0.36 0.72 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.70 7.44 -51.93 -0.39 0.32 16 42 H 0.09 1.50 7.47 -51.93 -0.39 1.12 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.09 0.60 4.66 -51.93 -0.24 0.36 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -34.48 406.81 -9.68 -44.16 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.65 Total: -1.55 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.45 Total: 3.68 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.57 Total: -49.52 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.11 Total: -19.72 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.48 -9.68 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105735813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.468 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds