Wall clock time and date at job start Tue Mar 31 2020 21:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00094 * 2 1 4 4 O 1.42895 * 109.47019 * 135.00115 * 3 2 1 5 5 C 1.42904 * 113.99818 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47319 * 29.99702 * 5 4 3 7 7 C 1.53007 * 109.46679 * 270.00022 * 5 4 3 8 8 C 1.50696 * 109.47034 * 150.00410 * 5 4 3 9 9 O 1.21285 * 120.00397 * 4.99403 * 8 5 4 10 10 N 1.34774 * 120.00031 * 184.99726 * 8 5 4 11 11 C 1.46924 * 120.63414 * 179.97438 * 10 8 5 12 12 C 1.53186 * 108.77928 * 233.58746 * 11 10 8 13 13 C 1.53043 * 109.31566 * 305.36857 * 12 11 10 14 14 O 1.42898 * 109.45974 * 181.38490 * 13 12 11 15 15 C 1.42898 * 114.00084 * 149.99873 * 14 13 12 16 16 C 1.53495 * 114.20802 * 209.99948 * 15 14 13 17 17 N 1.47066 * 87.98658 * 220.14499 * 16 15 14 18 18 C 1.36937 * 136.06113 * 206.85859 * 17 16 15 19 19 H 1.07995 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99557 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47001 * 120.00359 * 22 20 18 25 25 H 1.48499 * 109.47209 * 240.00202 * 22 20 18 26 26 C 1.47067 * 87.88528 * 27.11900 * 17 16 15 27 27 C 1.53038 * 109.53640 * 61.36211 * 13 12 11 28 28 C 1.46935 * 120.62989 * 359.97438 * 10 8 5 29 29 H 1.07999 * 119.99777 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99799 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00113 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46596 * 15.00175 * 3 2 1 33 33 H 1.08991 * 109.47245 * 255.00672 * 3 2 1 34 34 H 1.08998 * 109.46695 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.46983 * 299.99885 * 7 5 4 36 36 H 1.09000 * 109.46998 * 60.00299 * 7 5 4 37 37 H 1.09001 * 109.58519 * 113.79950 * 11 10 8 38 38 H 1.09002 * 109.58747 * 353.38309 * 11 10 8 39 39 H 1.09003 * 109.50061 * 185.41682 * 12 11 10 40 40 H 1.08999 * 109.49663 * 65.31873 * 12 11 10 41 41 H 1.09003 * 109.45562 * 301.35654 * 13 12 11 42 42 H 1.09006 * 113.28061 * 343.06477 * 15 14 13 43 43 H 1.09005 * 113.46950 * 105.37065 * 16 15 14 44 44 H 1.08994 * 113.52293 * 334.93549 * 16 15 14 45 45 H 0.96999 * 119.99537 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.46858 * 87.65629 * 26 17 16 47 47 H 1.08993 * 113.47208 * 218.09965 * 26 17 16 48 48 H 1.08998 * 109.49599 * 58.59280 * 27 13 12 49 49 H 1.09005 * 109.49168 * 178.68786 * 27 13 12 50 50 H 1.09006 * 109.58220 * 246.19859 * 28 10 8 51 51 H 1.09000 * 109.58458 * 6.47415 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9078 2.4353 1.0328 6 1 3.2834 3.2949 0.7893 7 6 5.0700 2.3519 0.0412 8 6 4.4500 2.5879 2.4305 9 8 4.2694 1.7123 3.2501 10 7 5.1356 3.6975 2.7699 11 6 5.6699 3.8610 4.1288 12 6 5.1781 5.1969 4.6946 13 6 5.5553 6.3244 3.7310 14 8 5.1263 7.5758 4.2713 15 6 5.9418 8.6847 3.8876 16 6 5.9995 9.8129 4.9268 17 7 5.9307 10.7715 3.8137 18 6 6.3436 12.0585 3.5937 19 1 6.8625 12.5995 4.3712 20 6 6.0961 12.6675 2.3710 21 7 5.4642 12.0080 1.4234 22 14 6.6600 14.4229 2.0708 23 1 7.3422 14.9382 3.2850 24 1 7.6034 14.4505 0.9243 25 1 5.4833 15.2752 1.7643 26 6 5.2174 9.7420 3.0429 27 6 4.8748 6.0922 2.3801 28 6 5.3630 4.7667 1.7880 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3855 2.1160 0.2660 33 1 2.4754 1.4869 -0.9926 34 1 5.6660 3.2625 0.1027 35 1 5.6944 1.4923 0.2846 36 1 4.6778 2.2415 -0.9698 37 1 6.7594 3.8571 4.0959 38 1 5.3185 3.0450 4.7603 39 1 5.6443 5.3753 5.6636 40 1 4.0949 5.1656 4.8117 41 1 6.6367 6.3392 3.5949 42 1 6.9146 8.3886 3.4949 43 1 6.9412 9.8508 5.4746 44 1 5.1292 9.8456 5.5822 45 1 5.2909 12.4337 0.5692 46 1 4.1382 9.7550 3.1959 47 1 5.4939 9.7194 1.9888 48 1 3.7944 6.0525 2.5190 49 1 5.1252 6.9078 1.7017 50 1 6.4275 4.8367 1.5641 51 1 4.8111 4.5469 0.8742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105735813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:08 Heat of formation + Delta-G solvation = -57.173831 kcal Electronic energy + Delta-G solvation = -29746.383990 eV Core-core repulsion = 25648.253967 eV Total energy + Delta-G solvation = -4098.130024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59336 -40.39070 -39.23908 -38.42698 -36.84780 -35.07578 -34.22764 -33.43672 -32.24176 -31.34306 -29.49431 -27.30328 -26.49944 -26.37974 -25.02683 -24.54827 -23.94861 -21.95066 -21.35044 -21.00798 -20.14841 -18.80702 -18.61841 -17.90786 -17.71763 -17.10000 -16.97101 -16.78386 -16.11514 -15.93535 -15.78479 -15.74254 -15.29425 -15.07117 -14.92383 -14.58337 -14.48419 -14.04460 -13.87912 -13.59394 -13.49918 -13.35783 -13.30301 -13.16806 -12.92237 -12.89061 -12.82068 -12.74828 -12.46776 -12.25453 -12.18314 -11.93406 -11.86015 -11.80656 -11.47000 -11.32497 -11.07116 -10.90853 -10.74496 -10.22202 -10.14581 -9.78702 -8.98303 -7.93810 -5.28916 1.17842 1.46681 1.47351 1.48099 1.58513 1.74388 2.40501 2.70868 2.84260 3.28245 3.37161 3.53029 3.69037 3.77316 3.85089 3.93136 3.93626 4.02236 4.10109 4.10781 4.17755 4.18997 4.31183 4.37071 4.39030 4.51043 4.56411 4.59479 4.68212 4.73698 4.77944 4.80064 4.85572 4.86160 4.91230 4.96507 4.99092 5.17133 5.18212 5.20753 5.23814 5.36196 5.45923 5.47937 5.64222 5.69490 5.87570 6.05149 6.30660 6.47919 6.87818 7.06145 7.55545 8.55726 9.24054 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002064 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.651808 B =13559.693530 C =14499.440663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.172 4.172 3 C 0.081 3.919 4 O -0.384 6.384 5 C 0.069 3.931 6 H 0.108 0.892 7 C -0.173 4.173 8 C 0.513 3.487 9 O -0.572 6.572 10 N -0.606 5.606 11 C 0.118 3.882 12 C -0.122 4.122 13 C 0.084 3.916 14 O -0.380 6.380 15 C 0.070 3.930 16 C 0.114 3.886 17 N -0.637 5.637 18 C -0.231 4.231 19 H 0.089 0.911 20 C -0.067 4.067 21 N -0.952 5.952 22 Si 0.984 3.016 23 H -0.264 1.264 24 H -0.288 1.288 25 H -0.293 1.293 26 C 0.141 3.859 27 C -0.156 4.156 28 C 0.105 3.895 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.250 0.750 46 H 0.009 0.991 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -22.536 -4.409 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.005 3.995 4 O -0.303 6.303 5 C 0.008 3.992 6 H 0.125 0.875 7 C -0.230 4.230 8 C 0.301 3.699 9 O -0.451 6.451 10 N -0.340 5.340 11 C -0.004 4.004 12 C -0.160 4.160 13 C 0.027 3.973 14 O -0.297 6.297 15 C 0.011 3.989 16 C -0.011 4.011 17 N -0.365 5.365 18 C -0.358 4.358 19 H 0.106 0.894 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.812 3.188 23 H -0.188 1.188 24 H -0.214 1.214 25 H -0.221 1.221 26 C 0.015 3.985 27 C -0.195 4.195 28 C -0.017 4.017 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.117 0.883 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.955 -22.856 -3.900 23.268 hybrid contribution -0.199 1.339 -0.382 1.406 sum -2.154 -21.517 -4.282 22.044 Atomic orbital electron populations 1.24061 0.95234 1.03382 0.98123 1.22781 0.96188 0.98038 1.02051 1.21850 0.88245 0.96564 0.92824 1.88031 1.45197 1.35535 1.61575 1.22031 0.95162 0.89961 0.92055 0.87457 1.22425 0.97129 1.04365 0.99127 1.20926 0.77525 0.81320 0.90125 1.90681 1.59048 1.42190 1.53207 1.48189 1.54233 1.18319 1.13240 1.21617 0.99505 0.96905 0.82402 1.21917 1.02017 0.92554 0.99530 1.22316 0.98720 0.83363 0.92948 1.87921 1.54065 1.15558 1.72206 1.24161 0.93978 0.84439 0.96356 1.22728 0.99470 0.87027 0.91924 1.45624 1.65388 1.11611 1.13875 1.19370 1.30140 0.87729 0.98608 0.89366 1.25717 1.01313 1.02818 0.96182 1.70026 1.46890 1.37937 1.05153 0.84925 0.77094 0.78793 0.77985 1.18800 1.21427 1.22057 1.22475 0.93677 0.85700 0.96674 1.22439 1.01451 0.98051 0.97554 1.22161 1.03554 0.84405 0.91539 0.86513 0.87573 0.86926 0.91978 0.90105 0.88435 0.92226 0.89211 0.88830 0.89812 0.88918 0.92361 0.90326 0.87770 0.92028 0.94260 0.94075 0.97358 0.93547 0.91870 0.90137 0.88251 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 14.31 67.78 0.97 -1.14 16 2 C -0.17 -2.65 9.89 25.65 0.25 -2.40 16 3 C 0.08 1.24 6.16 71.24 0.44 1.68 16 4 O -0.38 -8.52 9.51 -129.99 -1.24 -9.76 16 5 C 0.07 1.20 2.30 29.85 0.07 1.27 16 6 H 0.11 1.40 7.08 -2.39 -0.02 1.38 16 7 C -0.17 -2.03 9.10 71.98 0.66 -1.38 16 8 C 0.51 12.13 7.12 87.66 0.62 12.76 16 9 O -0.57 -18.95 15.92 15.94 0.25 -18.70 16 10 N -0.61 -11.46 2.97 -818.95 -2.43 -13.89 16 11 C 0.12 2.20 6.43 86.36 0.56 2.75 16 12 C -0.12 -2.49 5.73 30.67 0.18 -2.31 16 13 C 0.08 1.92 2.56 30.62 0.08 2.00 16 14 O -0.38 -12.07 10.05 -148.98 -1.50 -13.56 16 15 C 0.07 2.52 4.61 30.93 0.14 2.66 16 16 C 0.11 4.67 8.52 83.18 0.71 5.38 16 17 N -0.64 -33.01 3.78 -739.05 -2.80 -35.80 16 18 C -0.23 -12.91 10.75 84.03 0.90 -12.01 16 19 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 20 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 21 N -0.95 -56.65 11.51 21.65 0.25 -56.40 16 22 Si 0.98 44.89 29.55 68.60 2.03 46.92 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 C 0.14 6.70 7.25 83.18 0.60 7.31 16 27 C -0.16 -3.20 5.69 30.66 0.17 -3.02 16 28 C 0.11 1.49 4.97 86.35 0.43 1.92 16 29 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.11 1.12 7.90 -2.91 -0.02 1.10 16 31 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.06 0.85 7.80 -2.39 -0.02 0.83 16 33 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 34 H 0.10 0.79 5.41 -2.39 -0.01 0.78 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.74 7.87 -2.39 -0.02 0.72 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.84 7.01 -2.39 -0.02 1.83 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.56 7.44 -2.39 -0.02 1.55 16 42 H 0.10 3.41 7.47 -2.38 -0.02 3.39 16 43 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.05 2.40 7.12 -2.39 -0.02 2.39 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.10 1.04 8.14 -2.38 -0.02 1.03 16 51 H 0.11 1.12 4.66 -2.39 -0.01 1.11 16 Total: -1.00 -76.49 406.81 2.71 -73.78 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.90 Total: 15.28 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 7.25 Total: 12.14 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.98 Total: -106.10 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -2.48 Total: -42.02 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -76.49 2.71 -73.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105735813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.603 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds