Wall clock time and date at job start Tue Mar 31 2020 21:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00049 * 2 1 4 4 O 1.42898 * 109.46936 * 134.99817 * 3 2 1 5 5 C 1.42897 * 113.99955 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47500 * 330.00143 * 5 4 3 7 7 C 1.53005 * 109.46966 * 90.00172 * 5 4 3 8 8 C 1.50705 * 109.47217 * 210.00201 * 5 4 3 9 9 O 1.21276 * 120.00187 * 351.53633 * 8 5 4 10 10 N 1.34777 * 119.99825 * 171.54326 * 8 5 4 11 11 C 1.46925 * 120.63456 * 5.05208 * 10 8 5 12 12 C 1.53192 * 108.77861 * 233.59216 * 11 10 8 13 13 C 1.53037 * 109.31032 * 305.36250 * 12 11 10 14 14 O 1.42899 * 109.45911 * 181.38541 * 13 12 11 15 15 C 1.42895 * 114.00172 * 150.00369 * 14 13 12 16 16 C 1.53498 * 114.20838 * 210.00332 * 15 14 13 17 17 N 1.47074 * 87.98472 * 220.14520 * 16 15 14 18 18 C 1.36929 * 136.05714 * 206.85978 * 17 16 15 19 19 H 1.08006 * 120.00237 * 358.24986 * 18 17 16 20 20 C 1.38807 * 120.00464 * 178.25418 * 18 17 16 21 21 N 1.31623 * 119.99767 * 8.90723 * 20 18 17 22 22 Si 1.86794 * 120.00442 * 188.91535 * 20 18 17 23 23 H 1.48497 * 109.47342 * 94.94459 * 22 20 18 24 24 H 1.48507 * 109.47186 * 214.94613 * 22 20 18 25 25 H 1.48497 * 109.47132 * 334.94381 * 22 20 18 26 26 C 1.47065 * 87.88342 * 27.11756 * 17 16 15 27 27 C 1.53044 * 109.53574 * 61.36655 * 13 12 11 28 28 C 1.46924 * 120.62826 * 185.03875 * 10 8 5 29 29 H 1.08005 * 120.00064 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99849 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47057 * 15.00332 * 3 2 1 33 33 H 1.08998 * 109.47028 * 254.99885 * 3 2 1 34 34 H 1.09003 * 109.46719 * 187.20681 * 7 5 4 35 35 H 1.08997 * 109.47132 * 307.20544 * 7 5 4 36 36 H 1.08995 * 109.47273 * 67.20890 * 7 5 4 37 37 H 1.09002 * 109.58475 * 113.79729 * 11 10 8 38 38 H 1.08999 * 109.70224 * 353.45039 * 11 10 8 39 39 H 1.08999 * 109.49186 * 185.41339 * 12 11 10 40 40 H 1.08999 * 109.49480 * 65.31665 * 12 11 10 41 41 H 1.08995 * 109.46446 * 301.36037 * 13 12 11 42 42 H 1.09002 * 113.28523 * 343.06558 * 15 14 13 43 43 H 1.08997 * 113.47018 * 105.36560 * 16 15 14 44 44 H 1.09003 * 113.51734 * 334.92746 * 16 15 14 45 45 H 0.96999 * 120.00017 * 180.02562 * 21 20 18 46 46 H 1.09006 * 113.46631 * 87.66026 * 26 17 16 47 47 H 1.09002 * 113.46788 * 218.10095 * 26 17 16 48 48 H 1.09002 * 109.49521 * 58.58583 * 27 13 12 49 49 H 1.09008 * 109.49465 * 178.67965 * 27 13 12 50 50 H 1.09004 * 109.58522 * 246.19520 * 28 10 8 51 51 H 1.09001 * 109.59054 * 6.47314 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0329 6 1 3.9128 2.9320 0.0627 7 6 3.3029 3.3707 2.0817 8 6 5.3201 2.0861 1.4259 9 8 5.5926 0.9547 1.7671 10 7 6.2804 3.0314 1.3983 11 6 5.9462 4.4295 1.0946 12 6 6.8330 4.9093 -0.0587 13 6 8.3021 4.6785 0.3028 14 8 9.1336 5.1546 -0.7574 15 6 10.4134 5.6224 -0.3270 16 6 11.0029 6.7373 -1.2020 17 7 12.3135 6.0856 -1.0587 18 6 13.6226 6.4858 -1.0922 19 1 13.8664 7.5195 -1.2884 20 6 14.6363 5.5631 -0.8739 21 7 14.3547 4.2790 -0.8095 22 14 16.4002 6.1437 -0.6714 23 1 16.7088 6.2949 0.7732 24 1 17.3217 5.1464 -1.2728 25 1 16.5723 7.4513 -1.3539 26 6 11.5995 4.8138 -0.8703 27 6 8.5488 3.1827 0.5119 28 6 7.6814 2.6834 1.6716 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4755 1.4867 -0.9926 34 1 3.8192 4.3303 2.0535 35 1 2.2448 3.5210 1.8675 36 1 3.4139 2.9274 3.0712 37 1 6.1250 5.0474 1.9746 38 1 4.8981 4.5021 0.8042 39 1 6.6632 5.9722 -0.2303 40 1 6.5885 4.3507 -0.9622 41 1 8.5393 5.2172 1.2202 42 1 10.4615 5.8219 0.7435 43 1 10.9554 7.7231 -0.7394 44 1 10.6255 6.7331 -2.2246 45 1 15.0631 3.6342 -0.6566 46 1 11.3805 4.2964 -1.8044 47 1 12.0593 4.1640 -0.1257 48 1 8.2882 2.6404 -0.3970 49 1 9.6004 3.0167 0.7464 50 1 8.0018 3.1589 2.5987 51 1 7.7780 1.6015 1.7636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105735814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:12 Heat of formation + Delta-G solvation = -34.716773 kcal Electronic energy + Delta-G solvation = -29641.659309 eV Core-core repulsion = 25544.503097 eV Total energy + Delta-G solvation = -4097.156212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72118 -39.04641 -38.28899 -37.29838 -35.57313 -34.49379 -32.69549 -32.09514 -31.38302 -30.55486 -27.55764 -26.70481 -25.61059 -24.60739 -23.97776 -23.21282 -22.89615 -21.03715 -20.49112 -19.70995 -19.18395 -17.92232 -17.05431 -16.86636 -16.52279 -16.30042 -15.74437 -15.58764 -15.05878 -14.93338 -14.69492 -14.44160 -14.31144 -13.84992 -13.77663 -13.69228 -13.42026 -13.28305 -12.87823 -12.68184 -12.60503 -12.24332 -12.07342 -11.92016 -11.88121 -11.77677 -11.41074 -11.33232 -11.21196 -11.05044 -10.94791 -10.66957 -10.58387 -10.48113 -10.30692 -10.07347 -9.81873 -9.67292 -9.51814 -8.92143 -8.79838 -8.64594 -6.94634 -5.81786 -3.13013 1.69866 2.36331 2.50507 3.37409 3.41882 3.44858 3.46329 3.86281 4.08769 4.36046 4.45399 4.50065 4.52606 4.60068 4.71793 4.75907 4.83526 4.91032 5.01425 5.04432 5.09167 5.11829 5.22445 5.24562 5.29945 5.34935 5.38621 5.44576 5.45723 5.59982 5.63941 5.66590 5.70274 5.77747 5.88669 6.00207 6.14694 6.19314 6.23608 6.34002 6.42039 6.56372 6.62781 6.68650 7.06925 7.12523 7.18223 7.48688 7.83425 7.93852 7.94658 8.99448 9.65967 10.59556 11.36527 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.001854 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.215323 B =15098.348275 C =15374.897834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.071 3.929 6 H 0.087 0.913 7 C -0.178 4.178 8 C 0.518 3.482 9 O -0.519 6.519 10 N -0.610 5.610 11 C 0.102 3.898 12 C -0.134 4.134 13 C 0.093 3.907 14 O -0.369 6.369 15 C 0.030 3.970 16 C 0.118 3.882 17 N -0.606 5.606 18 C -0.219 4.219 19 H 0.084 0.916 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.144 3.856 27 C -0.157 4.157 28 C 0.116 3.884 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.255 0.745 46 H 0.033 0.967 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.002 -1.321 4.657 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.010 3.990 6 H 0.105 0.895 7 C -0.236 4.236 8 C 0.304 3.696 9 O -0.393 6.393 10 N -0.346 5.346 11 C -0.021 4.021 12 C -0.172 4.172 13 C 0.034 3.966 14 O -0.287 6.287 15 C -0.029 4.029 16 C -0.009 4.009 17 N -0.334 5.334 18 C -0.346 4.346 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.018 3.982 27 C -0.195 4.195 28 C -0.006 4.006 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.088 0.912 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.513 -2.155 4.775 28.007 hybrid contribution 1.069 0.471 -0.065 1.170 sum -26.444 -1.684 4.711 26.913 Atomic orbital electron populations 1.23838 0.95471 1.02314 1.00143 1.22726 0.95591 0.98224 1.00110 1.21685 0.88921 0.96213 0.92329 1.88081 1.43933 1.34977 1.60111 1.21891 0.89630 0.87394 1.00131 0.89536 1.22430 1.01988 0.99174 0.99973 1.20319 0.86287 0.85003 0.77966 1.90721 1.82093 1.20523 1.45974 1.48091 1.07914 1.08270 1.70330 1.22002 0.99869 0.81699 0.98490 1.22025 0.93984 1.02610 0.98607 1.21985 0.90218 0.93456 0.90894 1.87917 1.27001 1.81431 1.32320 1.24750 0.81727 0.98499 0.97917 1.22588 0.86406 0.94799 0.97060 1.45324 0.99497 1.04822 1.83707 1.18918 0.79087 0.94059 1.42574 0.89869 1.24827 0.98088 0.95238 1.02194 1.69871 1.31851 0.99815 1.54821 0.86068 0.84064 0.77586 0.77861 1.21466 1.21669 1.20503 1.22504 0.86860 0.90690 0.98127 1.22488 1.00945 0.97046 0.99062 1.21634 0.78736 1.02567 0.97669 0.87695 0.88431 0.86353 0.92512 0.92023 0.90191 0.91035 0.90980 0.90582 0.89025 0.89733 0.90600 0.92182 0.89672 0.93996 0.94231 0.93541 0.94968 0.91534 0.90708 0.89524 0.91171 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 14.31 29.01 0.42 -0.64 16 2 C -0.15 -1.12 9.89 -36.03 -0.36 -1.48 16 3 C 0.08 0.64 6.16 36.01 0.22 0.86 16 4 O -0.35 -3.87 9.52 -55.00 -0.52 -4.39 16 5 C 0.07 0.63 2.30 -27.88 -0.06 0.57 16 6 H 0.09 0.57 7.13 -51.93 -0.37 0.20 16 7 C -0.18 -1.12 9.11 37.16 0.34 -0.78 16 8 C 0.52 6.28 7.08 -10.98 -0.08 6.20 16 9 O -0.52 -8.61 15.96 -14.20 -0.23 -8.84 16 10 N -0.61 -6.28 2.97 -172.77 -0.51 -6.79 16 11 C 0.10 0.74 5.30 -3.71 -0.02 0.72 16 12 C -0.13 -1.23 5.73 -26.61 -0.15 -1.39 16 13 C 0.09 1.15 2.56 -26.69 -0.07 1.08 16 14 O -0.37 -6.10 10.05 -35.23 -0.35 -6.45 16 15 C 0.03 0.56 4.61 -26.22 -0.12 0.44 16 16 C 0.12 2.48 8.52 -8.50 -0.07 2.41 16 17 N -0.61 -15.84 3.78 -184.78 -0.70 -16.54 16 18 C -0.22 -6.21 10.73 -15.06 -0.16 -6.37 16 19 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.92 -27.44 11.62 55.49 0.64 -26.80 16 22 Si 0.91 22.07 29.56 -169.99 -5.03 17.05 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.14 3.46 7.21 -8.51 -0.06 3.40 16 27 C -0.16 -1.98 5.69 -26.61 -0.15 -2.14 16 28 C 0.12 1.31 6.42 -3.71 -0.02 1.29 16 29 H 0.10 0.50 8.06 -52.48 -0.42 0.07 16 30 H 0.10 0.45 7.90 -52.49 -0.41 0.03 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.06 0.32 7.47 -51.93 -0.39 -0.07 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.08 0.35 5.49 -51.93 -0.29 0.07 16 35 H 0.07 0.35 7.75 -51.93 -0.40 -0.05 16 36 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.45 4.38 -51.93 -0.23 0.22 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.70 7.43 -51.93 -0.39 0.31 16 42 H 0.09 1.52 7.47 -51.93 -0.39 1.14 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.73 7.26 -51.93 -0.38 1.35 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.10 1.22 7.04 -51.93 -0.37 0.86 16 LS Contribution 407.00 15.07 6.13 6.13 Total: -1.00 -35.20 407.00 -9.66 -44.86 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.64 Total: -2.14 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.45 Total: 3.91 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.57 Total: -50.13 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.10 Total: -19.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.20 -9.66 -44.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105735814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.144 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds