Wall clock time and date at job start Tue Mar 31 2020 20:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47349 * 2 1 4 4 O 1.42897 * 109.47286 * 120.00119 * 2 1 3 5 5 C 1.53003 * 109.46997 * 240.00284 * 2 1 3 6 6 C 1.52998 * 109.47394 * 173.21394 * 5 2 1 7 7 H 1.09008 * 109.69768 * 302.96109 * 6 5 2 8 8 C 1.53191 * 109.58727 * 63.32763 * 6 5 2 9 9 C 1.53034 * 109.31300 * 174.44236 * 8 6 5 10 10 C 1.53043 * 109.52576 * 298.61214 * 9 8 6 11 11 C 1.53196 * 109.31251 * 61.37438 * 10 9 8 12 12 N 1.46919 * 109.58794 * 182.60495 * 6 5 2 13 13 C 1.34777 * 120.63208 * 6.62774 * 12 6 5 14 14 O 1.21345 * 119.99717 * 353.29393 * 13 12 6 15 15 C 1.49453 * 120.00008 * 173.30373 * 13 12 6 16 16 O 1.21341 * 120.00150 * 353.95021 * 15 13 12 17 17 N 1.34773 * 119.99871 * 173.94913 * 15 13 12 18 18 C 1.46502 * 120.00351 * 185.01183 * 17 15 13 19 19 C 1.52999 * 109.47527 * 184.99111 * 18 17 15 20 20 C 1.50697 * 115.54751 * 65.07642 * 19 18 17 21 21 H 1.08002 * 120.00263 * 274.16811 * 20 19 18 22 22 C 1.37873 * 120.00225 * 94.17758 * 20 19 18 23 23 N 1.31520 * 120.00009 * 4.75272 * 22 20 19 24 24 Si 1.86799 * 120.00339 * 184.75286 * 22 20 19 25 25 H 1.48502 * 109.46955 * 59.99871 * 24 22 20 26 26 H 1.48501 * 109.47097 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47140 * 299.99939 * 24 22 20 28 28 C 1.52999 * 117.49861 * 279.40765 * 19 18 17 29 29 C 1.52998 * 117.50033 * 210.74768 * 19 18 17 30 30 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47078 * 299.99898 * 1 2 3 32 32 H 1.09003 * 109.47364 * 59.99618 * 1 2 3 33 33 H 0.96696 * 114.00238 * 60.00124 * 4 2 1 34 34 H 1.09002 * 109.47007 * 53.20821 * 5 2 1 35 35 H 1.09004 * 109.46909 * 293.21253 * 5 2 1 36 36 H 1.08993 * 109.50822 * 54.47983 * 8 6 5 37 37 H 1.09009 * 109.48507 * 294.38110 * 8 6 5 38 38 H 1.09007 * 109.46292 * 178.60339 * 9 8 6 39 39 H 1.09003 * 109.46743 * 58.62686 * 9 8 6 40 40 H 1.08996 * 109.49952 * 181.32582 * 10 9 8 41 41 H 1.09001 * 109.49539 * 301.42113 * 10 9 8 42 42 H 1.08996 * 109.58813 * 65.14952 * 11 10 9 43 43 H 1.08993 * 109.58403 * 185.58196 * 11 10 9 44 44 H 0.97004 * 120.00035 * 5.01210 * 17 15 13 45 45 H 1.09003 * 109.46818 * 304.99535 * 18 17 15 46 46 H 1.09000 * 109.46622 * 64.98808 * 18 17 15 47 47 H 0.96997 * 120.00231 * 185.00887 * 23 22 20 48 48 H 1.09007 * 117.49752 * 359.97438 * 28 19 18 49 49 H 1.08994 * 117.49890 * 145.01854 * 28 19 18 50 50 H 1.08990 * 117.49877 * 214.97982 * 29 19 18 51 51 H 1.09009 * 117.49624 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5604 -0.5753 -1.3375 7 1 3.8284 0.4813 -1.3434 8 6 4.2131 -1.2643 -0.1350 9 6 5.7343 -1.2359 -0.2996 10 6 6.1262 -2.0012 -1.5657 11 6 5.4952 -1.3208 -2.7846 12 7 4.0458 -1.2134 -2.5687 13 6 3.1782 -1.6907 -3.4829 14 8 1.9892 -1.7065 -3.2407 15 6 3.6804 -2.2007 -4.7949 16 8 4.8536 -2.0849 -5.0820 17 7 2.8301 -2.7893 -5.6592 18 6 3.3396 -3.3870 -6.8958 19 6 2.1661 -3.8717 -7.7494 20 6 1.2487 -2.7933 -8.2655 21 1 0.4330 -2.4392 -7.6525 22 6 1.4506 -2.2586 -9.5202 23 7 2.3842 -2.7533 -10.3034 24 14 0.3981 -0.8316 -10.1078 25 1 0.5757 0.3242 -9.1925 26 1 0.8118 -0.4437 -11.4803 27 1 -1.0294 -1.2405 -10.1176 28 6 1.5387 -5.2195 -7.3877 29 6 2.4001 -5.0890 -8.6463 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7211 -1.5952 1.2329 34 1 1.5808 -0.2823 -2.1351 35 1 1.7792 -1.7780 -1.1907 36 1 3.8724 -2.2981 -0.0788 37 1 3.9362 -0.7392 0.7793 38 1 6.2021 -1.7036 0.5668 39 1 6.0716 -0.2026 -0.3808 40 1 7.2112 -2.0008 -1.6698 41 1 5.7673 -3.0280 -1.4958 42 1 5.9209 -0.3251 -2.9085 43 1 5.6886 -1.9168 -3.6765 44 1 1.8806 -2.8171 -5.4624 45 1 3.9098 -2.6423 -7.4512 46 1 3.9849 -4.2311 -6.6523 47 1 2.5755 -2.3320 -11.1558 48 1 1.9623 -5.7611 -6.5419 49 1 0.4625 -5.3263 -7.5234 50 1 1.8903 -5.1099 -9.6094 51 1 3.3904 -5.5442 -8.6286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117685238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:04 Heat of formation + Delta-G solvation = -79.458146 kcal Electronic energy + Delta-G solvation = -30993.943939 eV Core-core repulsion = 26894.847595 eV Total energy + Delta-G solvation = -4099.096344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.02500 -39.05425 -37.77049 -37.25814 -36.74543 -33.74898 -32.91373 -32.57840 -31.94132 -30.80600 -27.66606 -26.80187 -25.51865 -24.79040 -23.63382 -22.21833 -21.49124 -21.14467 -20.51998 -19.75907 -19.04912 -17.40938 -16.82236 -16.57044 -16.13402 -15.75425 -15.61516 -15.34357 -14.97766 -14.75649 -14.56199 -14.43796 -14.22561 -13.88633 -13.71366 -13.30619 -13.23302 -13.00331 -12.77553 -12.65539 -12.37015 -12.05132 -11.96505 -11.76510 -11.57099 -11.44757 -11.16146 -11.07865 -11.02722 -11.02236 -10.92752 -10.79349 -10.56781 -10.23227 -9.97103 -9.91959 -9.56577 -9.18472 -8.74572 -8.54902 -8.49883 -8.39738 -8.16889 -6.10717 -4.20344 1.72659 2.58323 3.26991 3.32296 3.35133 3.51235 3.79306 4.17807 4.34431 4.50151 4.69132 4.75685 4.84000 4.87514 4.97297 5.00681 5.08657 5.14618 5.21383 5.33248 5.36014 5.45053 5.51635 5.61806 5.70947 5.80019 5.82965 5.89994 5.93282 5.94624 6.03676 6.06923 6.16111 6.20170 6.26263 6.29099 6.34581 6.43933 6.56348 6.65318 6.73711 7.04624 7.10136 7.21361 7.31908 7.43751 7.56790 7.76026 7.78372 8.11721 8.29395 8.47314 8.81602 9.47118 10.95856 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003084 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.496385 B = 9077.034459 C =10062.927820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.093 3.907 3 H 0.094 0.906 4 O -0.564 6.564 5 C -0.142 4.142 6 C 0.148 3.852 7 H 0.071 0.929 8 C -0.136 4.136 9 C -0.123 4.123 10 C -0.135 4.135 11 C 0.062 3.938 12 N -0.581 5.581 13 C 0.509 3.491 14 O -0.519 6.519 15 C 0.494 3.506 16 O -0.530 6.530 17 N -0.664 5.664 18 C 0.158 3.842 19 C 0.015 3.985 20 C -0.498 4.498 21 H 0.060 0.940 22 C 0.074 3.926 23 N -0.876 5.876 24 Si 0.890 3.110 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.213 4.213 29 C -0.131 4.131 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.373 0.627 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.150 0.850 44 H 0.413 0.587 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.262 0.738 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 2.566 19.915 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.034 3.966 3 H 0.112 0.888 4 O -0.370 6.370 5 C -0.180 4.180 6 C 0.045 3.955 7 H 0.089 0.911 8 C -0.173 4.173 9 C -0.161 4.161 10 C -0.173 4.173 11 C -0.059 4.059 12 N -0.315 5.315 13 C 0.292 3.708 14 O -0.395 6.395 15 C 0.275 3.725 16 O -0.411 6.411 17 N -0.312 5.312 18 C 0.035 3.965 19 C 0.014 3.986 20 C -0.536 4.536 21 H 0.078 0.922 22 C -0.130 4.130 23 N -0.512 5.512 24 Si 0.717 3.283 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.251 4.251 29 C -0.169 4.169 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.220 0.780 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.167 0.833 44 H 0.249 0.751 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.113 0.887 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.972 3.170 19.686 20.331 hybrid contribution -1.077 0.375 -0.487 1.240 sum 2.894 3.545 19.199 19.737 Atomic orbital electron populations 1.22420 0.96278 1.02652 1.02462 1.22127 0.93087 0.96598 0.84768 0.88837 1.86527 1.76410 1.29219 1.44816 1.22944 0.93683 1.02821 0.98543 1.21392 0.94590 0.96149 0.83354 0.91076 1.22271 0.94645 1.01526 0.98898 1.21591 0.96346 1.00459 0.97707 1.21948 1.00605 0.99809 0.94935 1.23036 0.77798 1.03071 1.02004 1.48039 1.07495 1.56963 1.18957 1.20366 0.86222 0.78883 0.85343 1.90758 1.16033 1.54376 1.78374 1.20128 0.86583 0.80080 0.85701 1.90374 1.16621 1.57915 1.76187 1.45898 1.11658 1.53415 1.20240 1.21278 0.96567 0.96282 0.82340 1.19044 0.94701 0.87662 0.97145 1.20321 1.13216 1.19954 1.00077 0.92191 1.24969 0.95439 0.96571 0.96013 1.69996 1.31801 1.38548 1.10891 0.86702 0.80801 0.82947 0.77853 1.20189 1.21231 1.20141 1.23093 0.98665 1.04208 0.99104 1.22454 0.98006 1.01793 0.94607 0.92257 0.92216 0.91448 0.77978 0.88203 0.90208 0.92094 0.87919 0.92010 0.92101 0.90873 0.91840 0.91794 0.83328 0.75074 0.90677 0.93699 0.92806 0.91817 0.90245 0.88686 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.53 37.16 0.35 -1.19 16 2 C 0.09 0.84 3.51 -26.73 -0.09 0.75 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 O -0.56 -4.85 10.05 -35.23 -0.35 -5.20 16 5 C -0.14 -1.58 2.92 -26.73 -0.08 -1.66 16 6 C 0.15 1.64 2.98 -67.60 -0.20 1.44 16 7 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 8 C -0.14 -1.29 4.44 -26.62 -0.12 -1.41 16 9 C -0.12 -1.11 5.88 -26.69 -0.16 -1.26 16 10 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 11 C 0.06 0.77 6.04 -3.71 -0.02 0.75 16 12 N -0.58 -7.76 2.97 -165.72 -0.49 -8.25 16 13 C 0.51 8.12 7.66 -11.58 -0.09 8.03 16 14 O -0.52 -8.63 11.91 5.50 0.07 -8.56 16 15 C 0.49 8.93 7.76 -11.59 -0.09 8.84 16 16 O -0.53 -10.15 13.09 5.50 0.07 -10.08 16 17 N -0.66 -12.70 5.45 -60.73 -0.33 -13.03 16 18 C 0.16 3.36 5.53 -4.04 -0.02 3.34 16 19 C 0.02 0.35 1.62 -155.66 -0.25 0.10 16 20 C -0.50 -12.80 8.76 -34.44 -0.30 -13.10 16 21 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 22 C 0.07 1.95 5.41 -17.82 -0.10 1.85 16 23 N -0.88 -23.84 11.84 55.43 0.66 -23.18 16 24 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 29 C -0.13 -2.93 8.84 -26.69 -0.24 -3.17 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.37 2.31 9.05 45.56 0.41 2.72 16 34 H 0.10 1.34 6.28 -51.93 -0.33 1.01 16 35 H 0.08 0.98 7.18 -51.93 -0.37 0.61 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.95 5.74 -51.92 -0.30 0.65 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.15 2.19 4.17 -55.54 -0.23 1.96 16 44 H 0.41 7.80 7.94 -40.82 -0.32 7.47 16 45 H 0.07 1.79 8.10 -51.93 -0.42 1.37 16 46 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 47 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 48 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 49 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 50 H 0.09 2.34 7.57 -51.93 -0.39 1.95 16 51 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -27.68 397.34 -9.09 -36.77 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.84 Total: 12.79 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.83 Total: -2.86 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.17 Total: -44.47 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.22 Total: -23.84 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.68 -9.09 -36.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.686 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds