Wall clock time and date at job start Tue Mar 31 2020 20:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47349 * 2 1 4 4 O 1.42897 * 109.47286 * 120.00119 * 2 1 3 5 5 C 1.53003 * 109.46997 * 240.00284 * 2 1 3 6 6 C 1.52998 * 109.47394 * 173.21394 * 5 2 1 7 7 H 1.09008 * 109.69768 * 302.96109 * 6 5 2 8 8 C 1.53191 * 109.58727 * 63.32763 * 6 5 2 9 9 C 1.53034 * 109.31300 * 174.44236 * 8 6 5 10 10 C 1.53043 * 109.52576 * 298.61214 * 9 8 6 11 11 C 1.53196 * 109.31251 * 61.37438 * 10 9 8 12 12 N 1.46919 * 109.58794 * 182.60495 * 6 5 2 13 13 C 1.34777 * 120.63208 * 6.62774 * 12 6 5 14 14 O 1.21345 * 119.99717 * 353.29393 * 13 12 6 15 15 C 1.49453 * 120.00008 * 173.30373 * 13 12 6 16 16 O 1.21341 * 120.00150 * 353.95021 * 15 13 12 17 17 N 1.34773 * 119.99871 * 173.94913 * 15 13 12 18 18 C 1.46502 * 120.00351 * 185.01183 * 17 15 13 19 19 C 1.52999 * 109.47527 * 184.99111 * 18 17 15 20 20 C 1.50697 * 115.54751 * 65.07642 * 19 18 17 21 21 H 1.08002 * 120.00263 * 274.16811 * 20 19 18 22 22 C 1.37873 * 120.00225 * 94.17758 * 20 19 18 23 23 N 1.31520 * 120.00009 * 4.75272 * 22 20 19 24 24 Si 1.86799 * 120.00339 * 184.75286 * 22 20 19 25 25 H 1.48502 * 109.46955 * 59.99871 * 24 22 20 26 26 H 1.48501 * 109.47097 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47140 * 299.99939 * 24 22 20 28 28 C 1.52999 * 117.49861 * 279.40765 * 19 18 17 29 29 C 1.52998 * 117.50033 * 210.74768 * 19 18 17 30 30 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47078 * 299.99898 * 1 2 3 32 32 H 1.09003 * 109.47364 * 59.99618 * 1 2 3 33 33 H 0.96696 * 114.00238 * 60.00124 * 4 2 1 34 34 H 1.09002 * 109.47007 * 53.20821 * 5 2 1 35 35 H 1.09004 * 109.46909 * 293.21253 * 5 2 1 36 36 H 1.08993 * 109.50822 * 54.47983 * 8 6 5 37 37 H 1.09009 * 109.48507 * 294.38110 * 8 6 5 38 38 H 1.09007 * 109.46292 * 178.60339 * 9 8 6 39 39 H 1.09003 * 109.46743 * 58.62686 * 9 8 6 40 40 H 1.08996 * 109.49952 * 181.32582 * 10 9 8 41 41 H 1.09001 * 109.49539 * 301.42113 * 10 9 8 42 42 H 1.08996 * 109.58813 * 65.14952 * 11 10 9 43 43 H 1.08993 * 109.58403 * 185.58196 * 11 10 9 44 44 H 0.97004 * 120.00035 * 5.01210 * 17 15 13 45 45 H 1.09003 * 109.46818 * 304.99535 * 18 17 15 46 46 H 1.09000 * 109.46622 * 64.98808 * 18 17 15 47 47 H 0.96997 * 120.00231 * 185.00887 * 23 22 20 48 48 H 1.09007 * 117.49752 * 359.97438 * 28 19 18 49 49 H 1.08994 * 117.49890 * 145.01854 * 28 19 18 50 50 H 1.08990 * 117.49877 * 214.97982 * 29 19 18 51 51 H 1.09009 * 117.49624 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5604 -0.5753 -1.3375 7 1 3.8284 0.4813 -1.3434 8 6 4.2131 -1.2643 -0.1350 9 6 5.7343 -1.2359 -0.2996 10 6 6.1262 -2.0012 -1.5657 11 6 5.4952 -1.3208 -2.7846 12 7 4.0458 -1.2134 -2.5687 13 6 3.1782 -1.6907 -3.4829 14 8 1.9892 -1.7065 -3.2407 15 6 3.6804 -2.2007 -4.7949 16 8 4.8536 -2.0849 -5.0820 17 7 2.8301 -2.7893 -5.6592 18 6 3.3396 -3.3870 -6.8958 19 6 2.1661 -3.8717 -7.7494 20 6 1.2487 -2.7933 -8.2655 21 1 0.4330 -2.4392 -7.6525 22 6 1.4506 -2.2586 -9.5202 23 7 2.3842 -2.7533 -10.3034 24 14 0.3981 -0.8316 -10.1078 25 1 0.5757 0.3242 -9.1925 26 1 0.8118 -0.4437 -11.4803 27 1 -1.0294 -1.2405 -10.1176 28 6 1.5387 -5.2195 -7.3877 29 6 2.4001 -5.0890 -8.6463 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7211 -1.5952 1.2329 34 1 1.5808 -0.2823 -2.1351 35 1 1.7792 -1.7780 -1.1907 36 1 3.8724 -2.2981 -0.0788 37 1 3.9362 -0.7392 0.7793 38 1 6.2021 -1.7036 0.5668 39 1 6.0716 -0.2026 -0.3808 40 1 7.2112 -2.0008 -1.6698 41 1 5.7673 -3.0280 -1.4958 42 1 5.9209 -0.3251 -2.9085 43 1 5.6886 -1.9168 -3.6765 44 1 1.8806 -2.8171 -5.4624 45 1 3.9098 -2.6423 -7.4512 46 1 3.9849 -4.2311 -6.6523 47 1 2.5755 -2.3320 -11.1558 48 1 1.9623 -5.7611 -6.5419 49 1 0.4625 -5.3263 -7.5234 50 1 1.8903 -5.1099 -9.6094 51 1 3.3904 -5.5442 -8.6286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117685238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:03 Heat of formation + Delta-G solvation = -97.018997 kcal Electronic energy + Delta-G solvation = -30994.705435 eV Core-core repulsion = 26894.847595 eV Total energy + Delta-G solvation = -4099.857840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21893 -40.33064 -38.83643 -38.58272 -38.03386 -35.24320 -33.94298 -33.78127 -33.58312 -31.57228 -28.99290 -28.02722 -27.34999 -25.91023 -24.70816 -23.24562 -22.84710 -22.31610 -21.59822 -21.36667 -20.45816 -18.72254 -18.05125 -17.85272 -17.38962 -16.97876 -16.82771 -16.68615 -16.28797 -16.07426 -15.78173 -15.65708 -15.28240 -15.14250 -14.90891 -14.54720 -14.45582 -14.11515 -13.99961 -13.74702 -13.60722 -13.40445 -13.16845 -12.95637 -12.85162 -12.80834 -12.68763 -12.42363 -12.29388 -12.01593 -11.97038 -11.92714 -11.84745 -11.61010 -11.38635 -11.07485 -10.99130 -10.72010 -10.39386 -10.22702 -9.97488 -9.78830 -9.57535 -8.11627 -6.24946 0.37923 1.34571 1.40868 1.42651 1.48776 2.15151 2.40665 2.52233 3.14784 3.30286 3.50967 3.59056 3.69837 3.88331 4.00581 4.06224 4.14769 4.20665 4.22865 4.31451 4.36564 4.51638 4.54674 4.57702 4.61165 4.67161 4.72402 4.82413 4.91772 4.93414 4.97259 5.02415 5.04575 5.09333 5.14113 5.21310 5.26561 5.31650 5.34181 5.37458 5.48519 5.49728 5.56522 5.66604 5.72959 5.77914 6.05244 6.34213 6.35835 6.78830 6.81797 6.86603 7.02218 7.44129 8.94117 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003084 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.496385 B = 9077.034459 C =10062.927820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 H 0.099 0.901 4 O -0.566 6.566 5 C -0.133 4.133 6 C 0.142 3.858 7 H 0.080 0.920 8 C -0.125 4.125 9 C -0.121 4.121 10 C -0.129 4.129 11 C 0.059 3.941 12 N -0.573 5.573 13 C 0.508 3.492 14 O -0.530 6.530 15 C 0.492 3.508 16 O -0.543 6.543 17 N -0.667 5.667 18 C 0.174 3.826 19 C -0.007 4.007 20 C -0.507 4.507 21 H 0.055 0.945 22 C 0.029 3.971 23 N -0.902 5.902 24 Si 0.943 3.057 25 H -0.278 1.278 26 H -0.286 1.286 27 H -0.271 1.271 28 C -0.184 4.184 29 C -0.138 4.138 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.384 0.616 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.127 0.873 44 H 0.414 0.586 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.260 0.740 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 2.953 22.455 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.117 0.883 4 O -0.374 6.374 5 C -0.171 4.171 6 C 0.041 3.959 7 H 0.098 0.902 8 C -0.163 4.163 9 C -0.158 4.158 10 C -0.167 4.167 11 C -0.062 4.062 12 N -0.305 5.305 13 C 0.291 3.709 14 O -0.408 6.408 15 C 0.274 3.726 16 O -0.424 6.424 17 N -0.316 5.316 18 C 0.051 3.949 19 C -0.007 4.007 20 C -0.545 4.545 21 H 0.073 0.927 22 C -0.172 4.172 23 N -0.540 5.540 24 Si 0.769 3.231 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.196 1.196 28 C -0.222 4.222 29 C -0.176 4.176 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.144 0.856 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.109 0.891 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.200 3.558 22.262 22.932 hybrid contribution -1.109 0.252 -1.224 1.671 sum 3.091 3.810 21.038 21.603 Atomic orbital electron populations 1.22394 0.95939 1.02688 1.02562 1.21966 0.93239 0.96490 0.83835 0.88327 1.86499 1.76480 1.30210 1.44182 1.22765 0.93591 1.02021 0.98724 1.21648 0.94763 0.96646 0.82882 0.90161 1.22198 0.95002 1.01025 0.98091 1.21595 0.95795 1.00878 0.97541 1.21910 1.01336 0.99166 0.94268 1.23012 0.77366 1.03399 1.02444 1.48154 1.07670 1.55769 1.18944 1.19985 0.86372 0.79627 0.84959 1.90774 1.16349 1.55220 1.78419 1.20609 0.86246 0.79404 0.86379 1.90403 1.17146 1.58067 1.76800 1.45802 1.11841 1.54126 1.19856 1.20882 0.95676 0.95668 0.82700 1.19087 0.95420 0.87931 0.98305 1.20610 1.13347 1.20520 0.99998 0.92675 1.25605 0.96540 0.98658 0.96403 1.70099 1.33234 1.39556 1.11086 0.85853 0.79643 0.80368 0.77194 1.20333 1.21158 1.19563 1.23062 0.98446 1.01989 0.98659 1.22350 0.98904 1.02198 0.94122 0.92295 0.91323 0.92103 0.76674 0.90668 0.91516 0.92610 0.86960 0.90378 0.91348 0.89250 0.92586 0.90918 0.85612 0.74952 0.94024 0.92486 0.93098 0.89098 0.90308 0.91336 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.53 71.98 0.69 -2.10 16 2 C 0.10 1.69 3.51 30.59 0.11 1.80 16 3 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 4 O -0.57 -8.30 10.05 -148.98 -1.50 -9.80 16 5 C -0.13 -2.83 2.92 30.59 0.09 -2.74 16 6 C 0.14 2.92 2.98 44.98 0.13 3.06 16 7 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 8 C -0.13 -2.06 4.44 30.67 0.14 -1.92 16 9 C -0.12 -1.79 5.88 30.62 0.18 -1.61 16 10 C -0.13 -2.30 6.08 30.67 0.19 -2.11 16 11 C 0.06 1.39 6.04 86.36 0.52 1.91 16 12 N -0.57 -14.77 2.97 -796.59 -2.37 -17.13 16 13 C 0.51 16.15 7.66 87.27 0.67 16.82 16 14 O -0.53 -17.64 11.91 -3.23 -0.04 -17.68 16 15 C 0.49 17.92 7.76 87.27 0.68 18.60 16 16 O -0.54 -21.06 13.09 -3.22 -0.04 -21.10 16 17 N -0.67 -25.76 5.45 -464.42 -2.53 -28.29 16 18 C 0.17 7.50 5.53 86.38 0.48 7.97 16 19 C -0.01 -0.31 1.62 -52.93 -0.09 -0.39 16 20 C -0.51 -26.34 8.76 25.60 0.22 -26.11 16 21 H 0.06 2.85 7.82 -2.91 -0.02 2.82 16 22 C 0.03 1.54 5.41 84.65 0.46 2.00 16 23 N -0.90 -50.13 11.84 21.45 0.25 -49.87 16 24 Si 0.94 42.84 29.54 68.60 2.03 44.87 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C -0.18 -7.37 9.96 30.62 0.30 -7.06 16 29 C -0.14 -6.19 8.84 30.62 0.27 -5.92 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.38 3.84 9.05 -74.06 -0.67 3.17 16 34 H 0.07 2.01 6.28 -2.39 -0.01 1.99 16 35 H 0.07 1.59 7.18 -2.38 -0.02 1.58 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 1.70 5.74 -2.38 -0.01 1.69 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.13 3.68 4.17 -59.44 -0.25 3.43 16 44 H 0.41 15.74 7.94 -92.70 -0.74 15.00 16 45 H 0.04 2.05 8.10 -2.39 -0.02 2.03 16 46 H 0.06 2.28 8.09 -2.39 -0.02 2.27 16 47 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 48 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 49 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.07 3.44 7.57 -2.39 -0.02 3.42 16 51 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 Total: -1.00 -59.53 397.34 0.14 -59.38 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.70 Total: 37.44 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.04 Total: 2.17 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -4.64 Total: -95.29 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.58 Total: -48.57 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -59.53 0.14 -59.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.635 kcal (2) G-P(sol) polarization free energy of solvation -59.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds