Wall clock time and date at job start Tue Mar 31 2020 20:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47150 * 2 1 4 4 O 1.42895 * 109.47141 * 240.00108 * 2 1 3 5 5 C 1.53007 * 109.46979 * 120.00222 * 2 1 3 6 6 C 1.52997 * 109.46921 * 184.71993 * 5 2 1 7 7 H 1.09002 * 109.59066 * 301.07191 * 6 5 2 8 8 C 1.53192 * 109.58596 * 61.35629 * 6 5 2 9 9 C 1.53043 * 109.31410 * 174.42069 * 8 6 5 10 10 C 1.53044 * 109.53483 * 298.63374 * 9 8 6 11 11 C 1.53195 * 109.31258 * 61.36671 * 10 9 8 12 12 N 1.46923 * 108.77323 * 305.36318 * 11 10 9 13 13 C 1.34784 * 120.62964 * 233.59113 * 12 11 10 14 14 O 1.21342 * 120.00039 * 173.53072 * 13 12 11 15 15 C 1.49452 * 119.99808 * 353.52344 * 13 12 11 16 16 O 1.21350 * 119.99770 * 352.99085 * 15 13 12 17 17 N 1.34778 * 119.99908 * 172.99039 * 15 13 12 18 18 C 1.46496 * 119.99865 * 185.01612 * 17 15 13 19 19 C 1.52997 * 109.46974 * 184.83194 * 18 17 15 20 20 C 1.50699 * 115.55359 * 305.51411 * 19 18 17 21 21 H 1.07997 * 120.00642 * 144.61284 * 20 19 18 22 22 C 1.37881 * 119.99604 * 324.61077 * 20 19 18 23 23 N 1.31516 * 120.00079 * 3.43102 * 22 20 19 24 24 Si 1.86803 * 119.99895 * 183.42725 * 22 20 19 25 25 H 1.48497 * 109.47146 * 60.00042 * 24 22 20 26 26 H 1.48498 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47161 * 300.00165 * 24 22 20 28 28 C 1.53000 * 117.49949 * 159.84025 * 19 18 17 29 29 C 1.53000 * 117.49813 * 91.18499 * 19 18 17 30 30 H 1.08999 * 109.46920 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47289 * 299.99717 * 1 2 3 32 32 H 1.08997 * 109.47157 * 59.99945 * 1 2 3 33 33 H 0.96706 * 114.00333 * 295.06096 * 4 2 1 34 34 H 1.09000 * 109.46831 * 304.72165 * 5 2 1 35 35 H 1.09001 * 109.47271 * 64.72124 * 5 2 1 36 36 H 1.09001 * 109.50067 * 294.36822 * 8 6 5 37 37 H 1.08998 * 109.50171 * 54.43786 * 8 6 5 38 38 H 1.08997 * 109.45866 * 58.65087 * 9 8 6 39 39 H 1.09001 * 109.46030 * 178.62813 * 9 8 6 40 40 H 1.09003 * 109.49305 * 181.31299 * 10 9 8 41 41 H 1.08996 * 109.50125 * 301.41223 * 10 9 8 42 42 H 1.09000 * 109.58481 * 65.15098 * 11 10 9 43 43 H 1.09004 * 109.58461 * 185.43362 * 11 10 9 44 44 H 0.97004 * 119.99936 * 5.01472 * 17 15 13 45 45 H 1.08999 * 109.47532 * 304.83642 * 18 17 15 46 46 H 1.09004 * 109.46900 * 64.83872 * 18 17 15 47 47 H 0.96998 * 119.99566 * 185.00010 * 23 22 20 48 48 H 1.09007 * 117.49913 * 0.02562 * 28 19 18 49 49 H 1.09002 * 117.49978 * 145.02165 * 28 19 18 50 50 H 1.09006 * 117.50084 * 214.98190 * 29 19 18 51 51 H 1.09001 * 117.49772 * 359.96755 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 6 3.5654 -0.6194 1.3100 7 1 3.9974 -1.0646 0.4138 8 6 3.9783 0.8530 1.4023 9 6 5.4930 0.9422 1.6027 10 6 5.8776 0.2497 2.9121 11 6 5.4862 -1.2295 2.8370 12 7 4.0591 -1.3245 2.5007 13 6 3.2189 -2.0451 3.2697 14 8 2.0255 -2.0215 3.0513 15 6 3.7571 -2.8733 4.3913 16 8 4.9559 -2.9990 4.5317 17 7 2.9110 -3.4806 5.2468 18 6 3.4366 -4.2010 6.4091 19 6 2.2863 -4.8933 7.1429 20 6 1.1425 -3.9998 7.5484 21 1 0.1301 -4.3752 7.5272 22 6 1.3887 -2.7029 7.9466 23 7 2.6131 -2.2243 7.9083 24 14 -0.0171 -1.6255 8.5404 25 1 -0.6526 -2.2509 9.7279 26 1 0.5071 -0.2854 8.9072 27 1 -1.0235 -1.4835 7.4576 28 6 2.6396 -6.0549 8.0739 29 6 1.9506 -6.3292 6.7348 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7847 -1.6144 -1.1959 34 1 1.6092 -0.2587 2.1372 35 1 1.7474 -1.7705 1.2080 36 1 3.7024 1.3667 0.4814 37 1 3.4711 1.3210 2.2459 38 1 5.9988 0.4524 0.7707 39 1 5.7927 1.9894 1.6443 40 1 6.9535 0.3340 3.0658 41 1 5.3529 0.7232 3.7419 42 1 6.0769 -1.7251 2.0666 43 1 5.6692 -1.7053 3.8005 44 1 1.9541 -3.4406 5.0929 45 1 4.1582 -4.9478 6.0780 46 1 3.9254 -3.4968 7.0825 47 1 2.7984 -1.3379 8.2559 48 1 3.6917 -6.3256 8.1639 49 1 2.0446 -6.1730 8.9795 50 1 0.9025 -6.6276 6.7600 51 1 2.5490 -6.7804 5.9433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117685240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:10 Heat of formation + Delta-G solvation = -79.399290 kcal Electronic energy + Delta-G solvation = -31523.686988 eV Core-core repulsion = 27424.593196 eV Total energy + Delta-G solvation = -4099.093792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.80694 -38.77972 -37.55478 -37.15188 -36.72172 -33.47653 -32.85311 -32.51386 -32.20509 -30.51421 -27.50362 -26.51081 -25.59986 -24.67267 -23.67427 -22.04813 -21.29560 -21.18461 -20.45863 -19.49693 -18.94483 -17.28542 -16.62030 -16.35543 -16.04025 -15.91208 -15.41189 -15.22493 -14.86590 -14.74362 -14.45254 -14.00553 -13.91430 -13.89195 -13.44231 -13.36972 -13.17894 -12.90222 -12.82306 -12.54102 -12.10136 -12.00770 -11.88370 -11.62511 -11.48380 -11.42822 -11.11229 -11.00848 -11.00486 -10.83912 -10.74610 -10.63969 -10.56263 -10.32066 -10.06750 -9.77639 -9.69313 -9.08200 -8.94614 -8.50970 -8.40934 -8.26146 -8.04091 -6.09435 -4.26607 2.00692 2.79783 3.22024 3.28156 3.30383 3.82546 4.03772 4.26345 4.31320 4.65054 4.72901 4.84811 4.87586 4.95029 5.05979 5.07155 5.14594 5.23198 5.34522 5.41735 5.46258 5.56913 5.60961 5.69534 5.75245 5.85889 5.90719 5.93800 5.94476 6.01076 6.03867 6.20598 6.22678 6.27897 6.33350 6.38268 6.46998 6.54682 6.61975 6.72725 6.81345 6.98422 7.20054 7.37650 7.42286 7.50197 7.54880 7.85456 8.02586 8.22760 8.41946 8.74209 8.84500 9.37370 10.81749 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003688 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.440682 B = 7591.053501 C = 8197.502870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.095 0.905 4 O -0.568 6.568 5 C -0.141 4.141 6 C 0.148 3.852 7 H 0.078 0.922 8 C -0.133 4.133 9 C -0.120 4.120 10 C -0.135 4.135 11 C 0.064 3.936 12 N -0.583 5.583 13 C 0.510 3.490 14 O -0.521 6.521 15 C 0.493 3.507 16 O -0.543 6.543 17 N -0.638 5.638 18 C 0.160 3.840 19 C 0.033 3.967 20 C -0.495 4.495 21 H 0.062 0.938 22 C 0.075 3.925 23 N -0.874 5.874 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.196 4.196 29 C -0.211 4.211 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.374 0.626 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.153 0.847 44 H 0.412 0.588 45 H 0.030 0.970 46 H 0.120 0.880 47 H 0.264 0.736 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 5.087 -13.283 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.031 3.969 3 H 0.113 0.887 4 O -0.374 6.374 5 C -0.179 4.179 6 C 0.045 3.955 7 H 0.096 0.904 8 C -0.171 4.171 9 C -0.158 4.158 10 C -0.174 4.174 11 C -0.057 4.057 12 N -0.317 5.317 13 C 0.294 3.706 14 O -0.397 6.397 15 C 0.274 3.726 16 O -0.425 6.425 17 N -0.284 5.284 18 C 0.038 3.962 19 C 0.032 3.968 20 C -0.532 4.532 21 H 0.080 0.920 22 C -0.129 4.129 23 N -0.511 5.511 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.234 4.234 29 C -0.248 4.248 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.221 0.779 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.169 0.831 44 H 0.249 0.751 45 H 0.048 0.952 46 H 0.137 0.863 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.095 0.905 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.631 5.802 -13.399 15.046 hybrid contribution -1.361 0.149 0.523 1.466 sum 2.270 5.951 -12.877 14.366 Atomic orbital electron populations 1.22417 0.96446 1.02675 1.02261 1.22228 0.93061 0.96752 0.84848 0.88684 1.86525 1.80836 1.26603 1.43407 1.22917 0.93645 1.03270 0.98058 1.21297 0.95030 0.92028 0.87115 0.90412 1.22047 0.96606 0.96078 1.02360 1.21537 0.95651 1.00537 0.98026 1.21949 1.01406 0.96208 0.97802 1.23006 0.79000 0.96654 1.07033 1.47983 1.09783 1.48108 1.25800 1.20510 0.86255 0.80653 0.83220 1.90749 1.15235 1.64337 1.69417 1.19885 0.86864 0.82075 0.83805 1.90331 1.14858 1.62606 1.74712 1.45612 1.10867 1.48562 1.23399 1.21319 0.94567 0.94810 0.85508 1.19208 0.95565 0.85634 0.96365 1.20510 0.91901 0.95383 1.45431 0.91964 1.24981 0.95875 0.97363 0.94697 1.69818 1.18874 1.18048 1.44316 0.86594 0.82288 0.79454 0.79415 1.20152 1.21202 1.19977 1.22949 0.98425 1.08459 0.93583 1.22966 0.99600 1.04306 0.97945 0.92224 0.91560 0.92303 0.77935 0.89418 0.89034 0.90706 0.91516 0.91914 0.91983 0.90806 0.91617 0.92045 0.83103 0.75121 0.95171 0.86255 0.92584 0.91361 0.90094 0.90489 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.56 37.16 0.36 -1.46 16 2 C 0.09 0.97 3.40 -26.73 -0.09 0.88 16 3 H 0.10 0.98 6.36 -51.93 -0.33 0.65 16 4 O -0.57 -6.12 12.86 -35.23 -0.45 -6.57 16 5 C -0.14 -1.82 2.77 -26.73 -0.07 -1.89 16 6 C 0.15 1.88 2.91 -67.60 -0.20 1.68 16 7 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 8 C -0.13 -1.47 4.89 -26.61 -0.13 -1.60 16 9 C -0.12 -1.23 5.88 -26.69 -0.16 -1.39 16 10 C -0.14 -1.60 6.08 -26.61 -0.16 -1.76 16 11 C 0.06 0.90 6.03 -3.71 -0.02 0.88 16 12 N -0.58 -8.81 2.97 -165.72 -0.49 -9.31 16 13 C 0.51 9.24 7.67 -11.58 -0.09 9.15 16 14 O -0.52 -9.85 11.90 5.50 0.07 -9.79 16 15 C 0.49 10.00 7.75 -11.58 -0.09 9.91 16 16 O -0.54 -11.35 13.11 5.50 0.07 -11.28 16 17 N -0.64 -13.73 5.14 -60.73 -0.31 -14.04 16 18 C 0.16 3.63 4.63 -4.05 -0.02 3.61 16 19 C 0.03 0.76 2.07 -155.66 -0.32 0.43 16 20 C -0.50 -12.37 8.30 -34.44 -0.29 -12.66 16 21 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 22 C 0.07 1.88 5.31 -17.82 -0.09 1.78 16 23 N -0.87 -22.49 10.16 55.43 0.56 -21.93 16 24 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C -0.20 -4.12 9.96 -26.70 -0.27 -4.38 16 29 C -0.21 -4.30 9.92 -26.70 -0.26 -4.56 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.37 3.04 9.03 45.56 0.41 3.45 16 34 H 0.09 1.32 7.05 -51.93 -0.37 0.95 16 35 H 0.09 1.32 6.43 -51.93 -0.33 0.98 16 36 H 0.07 0.73 6.68 -51.93 -0.35 0.39 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.15 2.54 4.19 -55.40 -0.23 2.30 16 44 H 0.41 9.11 7.43 -40.82 -0.30 8.81 16 45 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.12 3.03 5.91 -51.93 -0.31 2.72 16 47 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 50 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 51 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -26.53 395.03 -9.21 -35.74 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -7.67 Total: 17.50 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.91 Total: -1.37 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.24 Total: -45.27 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.32 Total: -27.64 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -26.53 -9.21 -35.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.659 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds