Wall clock time and date at job start Tue Mar 31 2020 20:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47150 * 2 1 4 4 O 1.42895 * 109.47141 * 240.00108 * 2 1 3 5 5 C 1.53007 * 109.46979 * 120.00222 * 2 1 3 6 6 C 1.52997 * 109.46921 * 184.71993 * 5 2 1 7 7 H 1.09002 * 109.59066 * 301.07191 * 6 5 2 8 8 C 1.53192 * 109.58596 * 61.35629 * 6 5 2 9 9 C 1.53043 * 109.31410 * 174.42069 * 8 6 5 10 10 C 1.53044 * 109.53483 * 298.63374 * 9 8 6 11 11 C 1.53195 * 109.31258 * 61.36671 * 10 9 8 12 12 N 1.46923 * 108.77323 * 305.36318 * 11 10 9 13 13 C 1.34784 * 120.62964 * 233.59113 * 12 11 10 14 14 O 1.21342 * 120.00039 * 173.53072 * 13 12 11 15 15 C 1.49452 * 119.99808 * 353.52344 * 13 12 11 16 16 O 1.21350 * 119.99770 * 352.99085 * 15 13 12 17 17 N 1.34778 * 119.99908 * 172.99039 * 15 13 12 18 18 C 1.46496 * 119.99865 * 185.01612 * 17 15 13 19 19 C 1.52997 * 109.46974 * 184.83194 * 18 17 15 20 20 C 1.50699 * 115.55359 * 305.51411 * 19 18 17 21 21 H 1.07997 * 120.00642 * 144.61284 * 20 19 18 22 22 C 1.37881 * 119.99604 * 324.61077 * 20 19 18 23 23 N 1.31516 * 120.00079 * 3.43102 * 22 20 19 24 24 Si 1.86803 * 119.99895 * 183.42725 * 22 20 19 25 25 H 1.48497 * 109.47146 * 60.00042 * 24 22 20 26 26 H 1.48498 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47161 * 300.00165 * 24 22 20 28 28 C 1.53000 * 117.49949 * 159.84025 * 19 18 17 29 29 C 1.53000 * 117.49813 * 91.18499 * 19 18 17 30 30 H 1.08999 * 109.46920 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47289 * 299.99717 * 1 2 3 32 32 H 1.08997 * 109.47157 * 59.99945 * 1 2 3 33 33 H 0.96706 * 114.00333 * 295.06096 * 4 2 1 34 34 H 1.09000 * 109.46831 * 304.72165 * 5 2 1 35 35 H 1.09001 * 109.47271 * 64.72124 * 5 2 1 36 36 H 1.09001 * 109.50067 * 294.36822 * 8 6 5 37 37 H 1.08998 * 109.50171 * 54.43786 * 8 6 5 38 38 H 1.08997 * 109.45866 * 58.65087 * 9 8 6 39 39 H 1.09001 * 109.46030 * 178.62813 * 9 8 6 40 40 H 1.09003 * 109.49305 * 181.31299 * 10 9 8 41 41 H 1.08996 * 109.50125 * 301.41223 * 10 9 8 42 42 H 1.09000 * 109.58481 * 65.15098 * 11 10 9 43 43 H 1.09004 * 109.58461 * 185.43362 * 11 10 9 44 44 H 0.97004 * 119.99936 * 5.01472 * 17 15 13 45 45 H 1.08999 * 109.47532 * 304.83642 * 18 17 15 46 46 H 1.09004 * 109.46900 * 64.83872 * 18 17 15 47 47 H 0.96998 * 119.99566 * 185.00010 * 23 22 20 48 48 H 1.09007 * 117.49913 * 0.02562 * 28 19 18 49 49 H 1.09002 * 117.49978 * 145.02165 * 28 19 18 50 50 H 1.09006 * 117.50084 * 214.98190 * 29 19 18 51 51 H 1.09001 * 117.49772 * 359.96755 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 6 3.5654 -0.6194 1.3100 7 1 3.9974 -1.0646 0.4138 8 6 3.9783 0.8530 1.4023 9 6 5.4930 0.9422 1.6027 10 6 5.8776 0.2497 2.9121 11 6 5.4862 -1.2295 2.8370 12 7 4.0591 -1.3245 2.5007 13 6 3.2189 -2.0451 3.2697 14 8 2.0255 -2.0215 3.0513 15 6 3.7571 -2.8733 4.3913 16 8 4.9559 -2.9990 4.5317 17 7 2.9110 -3.4806 5.2468 18 6 3.4366 -4.2010 6.4091 19 6 2.2863 -4.8933 7.1429 20 6 1.1425 -3.9998 7.5484 21 1 0.1301 -4.3752 7.5272 22 6 1.3887 -2.7029 7.9466 23 7 2.6131 -2.2243 7.9083 24 14 -0.0171 -1.6255 8.5404 25 1 -0.6526 -2.2509 9.7279 26 1 0.5071 -0.2854 8.9072 27 1 -1.0235 -1.4835 7.4576 28 6 2.6396 -6.0549 8.0739 29 6 1.9506 -6.3292 6.7348 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7847 -1.6144 -1.1959 34 1 1.6092 -0.2587 2.1372 35 1 1.7474 -1.7705 1.2080 36 1 3.7024 1.3667 0.4814 37 1 3.4711 1.3210 2.2459 38 1 5.9988 0.4524 0.7707 39 1 5.7927 1.9894 1.6443 40 1 6.9535 0.3340 3.0658 41 1 5.3529 0.7232 3.7419 42 1 6.0769 -1.7251 2.0666 43 1 5.6692 -1.7053 3.8005 44 1 1.9541 -3.4406 5.0929 45 1 4.1582 -4.9478 6.0780 46 1 3.9254 -3.4968 7.0825 47 1 2.7984 -1.3379 8.2559 48 1 3.6917 -6.3256 8.1639 49 1 2.0446 -6.1730 8.9795 50 1 0.9025 -6.6276 6.7600 51 1 2.5490 -6.7804 5.9433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117685240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:09 Heat of formation + Delta-G solvation = -96.069781 kcal Electronic energy + Delta-G solvation = -31524.409875 eV Core-core repulsion = 27424.593196 eV Total energy + Delta-G solvation = -4099.816678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13727 -40.20567 -38.77172 -38.53341 -38.09186 -35.02450 -34.17404 -33.84152 -33.68521 -31.41325 -28.81635 -27.93867 -27.43819 -25.88604 -24.83569 -23.24712 -22.91541 -22.15384 -21.62799 -21.22764 -20.42881 -18.75677 -17.98565 -17.86181 -17.24064 -16.97198 -16.76080 -16.70375 -16.50279 -16.02012 -15.77233 -15.36275 -15.31543 -14.96380 -14.72650 -14.53311 -14.37347 -14.33322 -14.01565 -13.83143 -13.61613 -13.33509 -13.08961 -12.93097 -12.91182 -12.71971 -12.67096 -12.40007 -12.31842 -12.06987 -12.04366 -11.99112 -11.73601 -11.54044 -11.46204 -11.09907 -10.93555 -10.85938 -10.72103 -10.20941 -9.88636 -9.70251 -9.58877 -8.00328 -6.22341 0.49978 1.40584 1.44082 1.45197 1.49118 2.29805 2.39429 2.62918 3.03175 3.41534 3.53646 3.66064 3.75116 3.80156 3.94175 4.05869 4.08824 4.18948 4.23402 4.25403 4.32349 4.50518 4.51512 4.58790 4.67167 4.70777 4.76730 4.86197 4.88700 4.94318 4.95452 4.96537 5.02453 5.06522 5.10489 5.19215 5.20431 5.24199 5.28113 5.32838 5.43884 5.50468 5.56646 5.58139 5.79657 5.93307 6.09213 6.34333 6.49403 6.78583 6.81824 6.91845 7.19575 7.42414 8.87541 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003688 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.440682 B = 7591.053501 C = 8197.502870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 H 0.105 0.895 4 O -0.574 6.574 5 C -0.132 4.132 6 C 0.144 3.856 7 H 0.091 0.909 8 C -0.129 4.129 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.061 3.939 12 N -0.574 5.574 13 C 0.507 3.493 14 O -0.535 6.535 15 C 0.488 3.512 16 O -0.552 6.552 17 N -0.645 5.645 18 C 0.174 3.826 19 C 0.003 3.997 20 C -0.505 4.505 21 H 0.055 0.945 22 C 0.039 3.961 23 N -0.891 5.891 24 Si 0.943 3.057 25 H -0.272 1.272 26 H -0.289 1.289 27 H -0.276 1.276 28 C -0.191 4.191 29 C -0.190 4.190 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.385 0.615 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.408 0.592 45 H 0.033 0.967 46 H 0.090 0.910 47 H 0.259 0.741 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 5.778 -15.106 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.042 3.958 3 H 0.123 0.877 4 O -0.381 6.381 5 C -0.170 4.170 6 C 0.043 3.957 7 H 0.109 0.891 8 C -0.167 4.167 9 C -0.152 4.152 10 C -0.169 4.169 11 C -0.060 4.060 12 N -0.307 5.307 13 C 0.289 3.711 14 O -0.413 6.413 15 C 0.269 3.731 16 O -0.435 6.435 17 N -0.291 5.291 18 C 0.051 3.949 19 C 0.003 3.997 20 C -0.542 4.542 21 H 0.074 0.926 22 C -0.162 4.162 23 N -0.528 5.528 24 Si 0.770 3.230 25 H -0.198 1.198 26 H -0.215 1.215 27 H -0.201 1.201 28 C -0.229 4.229 29 C -0.227 4.227 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.141 0.859 44 H 0.243 0.757 45 H 0.051 0.949 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.028 6.493 -15.241 17.049 hybrid contribution -1.430 -0.106 1.056 1.780 sum 2.598 6.387 -14.185 15.772 Atomic orbital electron populations 1.22400 0.96039 1.02625 1.02587 1.22102 0.93309 0.96756 0.83649 0.87745 1.86500 1.80918 1.27681 1.42999 1.22728 0.93779 1.02207 0.98297 1.21536 0.94921 0.93104 0.86137 0.89140 1.22039 0.97297 0.94492 1.02860 1.21533 0.94859 1.01606 0.97238 1.21921 1.02392 0.94281 0.98326 1.22975 0.78508 0.98473 1.06040 1.48095 1.09960 1.46917 1.25708 1.20171 0.86399 0.81236 0.83250 1.90758 1.15652 1.65111 1.69812 1.20390 0.86690 0.81853 0.84145 1.90355 1.15191 1.62736 1.75212 1.45584 1.10680 1.49242 1.23589 1.21001 0.94437 0.94111 0.85391 1.19265 0.95583 0.86634 0.98265 1.20689 0.92226 0.95960 1.45321 0.92638 1.25498 0.97363 0.98304 0.95083 1.69971 1.19935 1.17879 1.45012 0.85842 0.80227 0.78040 0.78921 1.19774 1.21481 1.20091 1.22961 0.99328 1.06889 0.93748 1.22961 1.00103 1.01824 0.97850 0.92524 0.91997 0.91168 0.76644 0.91907 0.90838 0.88621 0.92855 0.90524 0.90132 0.88854 0.93453 0.90259 0.85902 0.75670 0.94867 0.89193 0.93160 0.90038 0.90342 0.90015 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 9.56 71.98 0.69 -2.68 16 2 C 0.10 1.99 3.40 30.60 0.10 2.09 16 3 H 0.10 1.88 6.36 -2.39 -0.02 1.87 16 4 O -0.57 -11.01 12.86 -148.98 -1.92 -12.92 16 5 C -0.13 -3.33 2.77 30.60 0.08 -3.24 16 6 C 0.14 3.46 2.91 44.97 0.13 3.59 16 7 H 0.09 2.00 7.79 -2.39 -0.02 1.98 16 8 C -0.13 -2.56 4.89 30.67 0.15 -2.41 16 9 C -0.11 -2.01 5.88 30.62 0.18 -1.83 16 10 C -0.13 -2.87 6.08 30.67 0.19 -2.68 16 11 C 0.06 1.66 6.03 86.36 0.52 2.18 16 12 N -0.57 -17.11 2.97 -796.59 -2.37 -19.48 16 13 C 0.51 18.71 7.67 87.27 0.67 19.37 16 14 O -0.54 -20.77 11.90 -3.22 -0.04 -20.81 16 15 C 0.49 20.32 7.75 87.27 0.68 21.00 16 16 O -0.55 -23.68 13.11 -3.25 -0.04 -23.72 16 17 N -0.64 -28.53 5.14 -464.41 -2.39 -30.92 16 18 C 0.17 8.02 4.63 86.38 0.40 8.42 16 19 C 0.00 0.15 2.07 -52.93 -0.11 0.04 16 20 C -0.50 -25.47 8.30 25.60 0.21 -25.25 16 21 H 0.06 2.81 7.82 -2.91 -0.02 2.79 16 22 C 0.04 1.99 5.31 84.66 0.45 2.44 16 23 N -0.89 -46.95 10.16 21.45 0.22 -46.73 16 24 Si 0.94 41.73 29.54 68.60 2.03 43.75 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 28 C -0.19 -7.88 9.96 30.62 0.30 -7.58 16 29 C -0.19 -7.53 9.92 30.62 0.30 -7.22 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.38 5.52 9.03 -74.05 -0.67 4.85 16 34 H 0.06 1.91 7.05 -2.39 -0.02 1.89 16 35 H 0.07 2.12 6.43 -2.39 -0.02 2.10 16 36 H 0.10 1.55 6.68 -2.39 -0.02 1.53 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.12 4.18 4.19 -57.42 -0.24 3.94 16 44 H 0.41 18.60 7.43 -92.71 -0.69 17.92 16 45 H 0.03 1.48 8.05 -2.39 -0.02 1.46 16 46 H 0.09 4.72 5.91 -2.38 -0.01 4.71 16 47 H 0.26 13.44 8.32 -92.71 -0.77 12.66 16 48 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 49 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 50 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 51 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -57.18 395.03 -0.19 -57.37 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.64 Total: 47.23 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.95 Total: 6.23 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.54 Total: -97.13 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -2.00 Total: -57.45 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -57.18 -0.19 -57.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.700 kcal (2) G-P(sol) polarization free energy of solvation -57.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds