Wall clock time and date at job start Tue Mar 31 2020 21:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46979 * 2 1 4 4 C 1.53009 * 109.47047 * 240.00432 * 2 1 3 5 5 O 1.42902 * 109.47088 * 65.84435 * 4 2 1 6 6 C 1.53001 * 109.47274 * 120.00299 * 2 1 3 7 7 H 1.09000 * 109.69620 * 305.34097 * 6 2 1 8 8 C 1.53623 * 109.66605 * 65.93228 * 6 2 1 9 9 C 1.53035 * 109.24271 * 174.54769 * 8 6 2 10 10 C 1.53034 * 109.53775 * 298.51270 * 9 8 6 11 11 C 1.53187 * 109.31349 * 61.36631 * 10 9 8 12 12 N 1.46920 * 109.58429 * 184.98741 * 6 2 1 13 13 C 1.34775 * 120.63219 * 6.62168 * 12 6 2 14 14 O 1.21343 * 120.00181 * 7.37675 * 13 12 6 15 15 C 1.49454 * 119.99802 * 187.37205 * 13 12 6 16 16 O 1.21340 * 120.00188 * 6.69892 * 15 13 12 17 17 N 1.34775 * 119.99864 * 186.70190 * 15 13 12 18 18 C 1.46495 * 120.00095 * 174.98238 * 17 15 13 19 19 C 1.53001 * 109.47171 * 185.11165 * 18 17 15 20 20 C 1.50696 * 115.55187 * 29.75329 * 19 18 17 21 21 H 1.08004 * 119.99557 * 273.98805 * 20 19 18 22 22 C 1.37879 * 120.00624 * 93.98369 * 20 19 18 23 23 N 1.31511 * 120.00335 * 184.19098 * 22 20 19 24 24 Si 1.86799 * 119.99511 * 4.19117 * 22 20 19 25 25 H 1.48501 * 109.47089 * 94.52051 * 24 22 20 26 26 H 1.48497 * 109.47310 * 214.51674 * 24 22 20 27 27 H 1.48500 * 109.47639 * 334.51816 * 24 22 20 28 28 C 1.53004 * 117.50063 * 244.03986 * 19 18 17 29 29 C 1.53001 * 60.00082 * 252.51097 * 28 19 18 30 30 H 1.09008 * 109.46999 * 184.86411 * 1 2 3 31 31 H 1.08998 * 109.47296 * 304.86153 * 1 2 3 32 32 H 1.09005 * 109.47349 * 64.86875 * 1 2 3 33 33 H 1.08994 * 109.46910 * 185.85033 * 4 2 1 34 34 H 1.09001 * 109.46414 * 305.84456 * 4 2 1 35 35 H 0.96701 * 113.99668 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.63250 * 54.55704 * 8 6 2 37 37 H 1.09001 * 109.45710 * 294.43914 * 8 6 2 38 38 H 1.09002 * 109.46118 * 178.48703 * 9 8 6 39 39 H 1.09006 * 109.44410 * 58.52848 * 9 8 6 40 40 H 1.09001 * 109.49851 * 301.40988 * 10 9 8 41 41 H 1.09005 * 109.49310 * 181.31507 * 10 9 8 42 42 H 1.09004 * 109.58559 * 185.57392 * 11 10 9 43 43 H 1.09001 * 109.58828 * 65.14783 * 11 10 9 44 44 H 0.97005 * 120.00411 * 354.98224 * 17 15 13 45 45 H 1.08992 * 109.47588 * 65.11206 * 18 17 15 46 46 H 1.09001 * 109.47311 * 305.10564 * 18 17 15 47 47 H 0.97005 * 120.00295 * 180.02562 * 23 22 20 48 48 H 1.09001 * 117.49548 * 0.02562 * 28 19 18 49 49 H 1.08997 * 117.49920 * 145.02095 * 28 19 18 50 50 H 1.09004 * 117.49960 * 252.50814 * 29 28 19 51 51 H 1.08997 * 117.49946 * 107.48863 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 1.6790 0.0271 -2.4121 6 6 2.0400 -0.7213 1.2492 7 1 1.6028 -0.2685 2.1391 8 6 1.6562 -2.2072 1.1811 9 6 2.2859 -2.9456 2.3645 10 6 3.8103 -2.8380 2.2822 11 6 4.2190 -1.3637 2.3593 12 7 3.5043 -0.6194 1.3134 13 6 4.1786 0.1465 0.4330 14 8 3.5728 0.8635 -0.3361 15 6 5.6725 0.1128 0.4039 16 8 6.2746 -0.6904 1.0856 17 7 6.3508 0.9745 -0.3795 18 6 7.8142 1.0166 -0.3261 19 6 8.3241 2.1571 -1.2094 20 6 7.3980 3.3381 -1.3451 21 1 6.6245 3.3339 -2.0989 22 6 7.5379 4.4240 -0.5071 23 7 6.6794 5.4182 -0.5700 24 14 8.9471 4.4828 0.7177 25 1 10.0867 5.2285 0.1257 26 1 8.4979 5.1674 1.9566 27 1 9.3770 3.0996 1.0447 28 6 9.1756 1.7832 -2.4244 29 6 9.8285 2.4361 -1.2044 30 1 -0.3633 -1.0240 0.0871 31 1 -0.3634 0.5874 0.8432 32 1 -0.3634 0.4365 -0.9304 33 1 3.1249 -0.8128 -1.1985 34 1 1.5937 -1.7142 -1.3032 35 1 1.9712 -0.3720 -3.2430 36 1 2.0207 -2.6373 0.2482 37 1 0.5715 -2.3045 1.2271 38 1 1.9938 -3.9953 2.3346 39 1 1.9400 -2.4987 3.2966 40 1 4.1546 -3.2622 1.3390 41 1 4.2588 -3.3838 3.1124 42 1 5.2939 -1.2738 2.2021 43 1 3.9559 -0.9622 3.3380 44 1 5.8701 1.5669 -0.9786 45 1 8.2183 0.0703 -0.6855 46 1 8.1358 1.1820 0.7022 47 1 6.7781 6.1823 0.0194 48 1 9.3721 0.7247 -2.5947 49 1 9.0658 2.3913 -3.3223 50 1 10.1483 3.4738 -1.2997 51 1 10.4549 1.8072 -0.5719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118714775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:37 Heat of formation + Delta-G solvation = -53.938060 kcal Electronic energy + Delta-G solvation = -31899.341872 eV Core-core repulsion = 27801.352162 eV Total energy + Delta-G solvation = -4097.989710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24746 -39.08170 -37.46791 -37.25657 -36.59786 -34.05875 -33.72174 -32.65520 -32.20176 -29.53099 -27.50702 -26.21220 -25.84206 -25.26613 -24.00886 -22.67950 -21.87672 -20.78211 -20.30495 -19.56963 -18.79277 -17.37823 -17.12624 -16.60418 -16.22208 -16.07268 -15.38332 -15.21027 -15.14886 -14.75766 -14.57195 -14.43134 -13.99939 -13.87301 -13.62610 -13.34779 -13.12060 -13.03275 -12.74681 -12.53700 -12.46516 -12.42664 -12.26390 -11.94862 -11.73386 -11.47631 -11.23627 -11.07119 -10.96661 -10.87843 -10.70612 -10.47742 -10.42066 -10.28509 -9.78752 -9.59949 -9.59671 -9.21315 -8.81466 -8.63683 -8.54735 -8.43027 -8.33812 -6.21156 -4.28078 1.76721 2.62596 3.22742 3.34929 3.37961 3.55914 3.83689 4.32875 4.33921 4.60966 4.62933 4.74261 4.80140 4.88332 4.97488 5.09442 5.13211 5.17471 5.26549 5.33378 5.47122 5.54185 5.61487 5.63493 5.64494 5.75540 5.80330 5.86222 5.88076 5.89782 5.93355 5.99249 6.07770 6.09687 6.16854 6.22965 6.28446 6.36207 6.38488 6.39424 6.61221 6.73940 6.80507 7.01153 7.09407 7.28711 7.60751 7.80222 7.86881 8.21791 8.34039 8.53247 8.79390 9.40618 10.89042 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003688 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.939069 B = 7589.807836 C = 8251.786424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.131 0.869 4 C 0.097 3.903 5 O -0.563 6.563 6 C 0.152 3.848 7 H 0.079 0.921 8 C -0.135 4.135 9 C -0.122 4.122 10 C -0.128 4.128 11 C 0.048 3.952 12 N -0.584 5.584 13 C 0.502 3.498 14 O -0.490 6.490 15 C 0.495 3.505 16 O -0.538 6.538 17 N -0.653 5.653 18 C 0.151 3.849 19 C -0.016 4.016 20 C -0.500 4.500 21 H 0.083 0.917 22 C 0.084 3.916 23 N -0.885 5.885 24 Si 0.881 3.119 25 H -0.280 1.280 26 H -0.297 1.297 27 H -0.254 1.254 28 C -0.180 4.180 29 C -0.193 4.193 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.371 0.629 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.059 0.941 44 H 0.426 0.574 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.267 0.733 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -16.408 4.103 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.148 0.852 4 C 0.019 3.981 5 O -0.366 6.366 6 C 0.049 3.951 7 H 0.097 0.903 8 C -0.173 4.173 9 C -0.160 4.160 10 C -0.167 4.167 11 C -0.073 4.073 12 N -0.318 5.318 13 C 0.285 3.715 14 O -0.365 6.365 15 C 0.276 3.724 16 O -0.420 6.420 17 N -0.304 5.304 18 C 0.028 3.972 19 C -0.017 4.017 20 C -0.537 4.537 21 H 0.100 0.900 22 C -0.120 4.120 23 N -0.520 5.520 24 Si 0.709 3.291 25 H -0.207 1.207 26 H -0.224 1.224 27 H -0.178 1.178 28 C -0.218 4.218 29 C -0.230 4.230 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.217 0.783 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.177 0.823 43 H 0.077 0.923 44 H 0.267 0.733 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.279 -15.933 4.663 18.551 hybrid contribution 0.721 -0.011 0.208 0.750 sum -7.558 -15.944 4.870 18.305 Atomic orbital electron populations 1.21896 0.95303 1.00983 1.02225 1.21862 0.95024 1.04373 0.91244 0.85167 1.22338 0.98140 0.91920 0.85699 1.86492 1.81485 1.52723 1.15946 1.21478 0.79155 0.95602 0.98864 0.90295 1.22175 1.00894 0.94827 0.99407 1.21571 0.95944 1.00159 0.98287 1.21835 0.95468 0.96818 1.02537 1.23269 1.04191 0.90347 0.89473 1.47926 1.06544 1.46240 1.31106 1.20235 0.88680 0.81073 0.81525 1.90834 1.67655 1.38036 1.39983 1.20203 0.88332 0.82351 0.81525 1.90218 1.69638 1.38795 1.43354 1.45985 1.08435 1.36333 1.39662 1.21130 0.78185 0.97610 1.00307 1.19615 0.90125 0.96197 0.95795 1.20133 1.16099 0.98157 1.19360 0.89957 1.25014 0.95670 0.95121 0.96242 1.69899 1.35315 1.08387 1.38414 0.86873 0.82509 0.79104 0.80617 1.20654 1.22387 1.17840 1.23014 1.06540 0.98725 0.93478 1.22923 0.97201 1.00731 1.02160 0.93396 0.92995 0.91625 0.93663 0.95595 0.78327 0.91203 0.90578 0.91921 0.91907 0.91658 0.90914 0.82272 0.92297 0.73306 0.92657 0.91745 0.92356 0.90800 0.89310 0.89385 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.03 37.16 0.34 -1.35 16 2 C -0.11 -1.47 1.87 -90.62 -0.17 -1.64 16 3 H 0.13 2.27 5.62 -53.44 -0.30 1.97 16 4 C 0.10 1.34 4.58 37.16 0.17 1.51 16 5 O -0.56 -8.27 13.15 -35.50 -0.47 -8.74 16 6 C 0.15 1.83 2.67 -67.38 -0.18 1.65 16 7 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 8 C -0.13 -1.30 4.68 -26.39 -0.12 -1.42 16 9 C -0.12 -1.06 5.88 -26.70 -0.16 -1.22 16 10 C -0.13 -1.29 6.08 -26.62 -0.16 -1.45 16 11 C 0.05 0.60 6.26 -3.71 -0.02 0.58 16 12 N -0.58 -8.15 2.92 -165.47 -0.48 -8.64 16 13 C 0.50 8.54 6.13 -11.58 -0.07 8.47 16 14 O -0.49 -9.25 10.58 5.23 0.06 -9.20 16 15 C 0.49 9.07 7.77 -11.58 -0.09 8.98 16 16 O -0.54 -9.87 13.12 5.51 0.07 -9.80 16 17 N -0.65 -12.90 5.29 -60.74 -0.32 -13.22 16 18 C 0.15 3.00 5.85 -4.04 -0.02 2.97 16 19 C -0.02 -0.35 1.42 -155.66 -0.22 -0.57 16 20 C -0.50 -12.85 7.80 -34.44 -0.27 -13.12 16 21 H 0.08 2.31 7.95 -52.48 -0.42 1.90 16 22 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 23 N -0.88 -25.83 13.96 55.43 0.77 -25.06 16 24 Si 0.88 20.89 24.85 -169.99 -4.22 16.67 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.25 -5.67 5.75 56.52 0.33 -5.34 16 28 C -0.18 -3.40 9.88 -26.73 -0.26 -3.67 16 29 C -0.19 -3.84 6.91 -26.73 -0.18 -4.03 16 30 H 0.05 0.47 6.53 -51.92 -0.34 0.13 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 33 H 0.05 0.70 5.17 -51.93 -0.27 0.43 16 34 H 0.03 0.31 6.59 -51.93 -0.34 -0.03 16 35 H 0.37 3.89 9.12 45.56 0.42 4.31 16 36 H 0.07 0.72 6.20 -51.93 -0.32 0.40 16 37 H 0.08 0.63 6.79 -51.93 -0.35 0.28 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.16 2.35 3.81 -56.64 -0.22 2.13 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.43 9.04 6.58 -40.82 -0.27 8.77 16 45 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 46 H 0.06 1.33 7.80 -51.93 -0.41 0.92 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 49 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 50 H 0.09 1.86 6.12 -51.93 -0.32 1.54 16 51 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -29.58 379.60 -7.78 -37.36 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -7.38 Total: 17.01 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.53 Total: -2.11 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.03 Total: -46.92 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.34 Total: -27.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.22 Total: 16.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.58 -7.78 -37.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118714775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.574 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds