Wall clock time and date at job start Tue Mar 31 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46979 * 2 1 4 4 C 1.53009 * 109.47047 * 240.00432 * 2 1 3 5 5 O 1.42902 * 109.47088 * 65.84435 * 4 2 1 6 6 C 1.53001 * 109.47274 * 120.00299 * 2 1 3 7 7 H 1.09000 * 109.69620 * 305.34097 * 6 2 1 8 8 C 1.53623 * 109.66605 * 65.93228 * 6 2 1 9 9 C 1.53035 * 109.24271 * 174.54769 * 8 6 2 10 10 C 1.53034 * 109.53775 * 298.51270 * 9 8 6 11 11 C 1.53187 * 109.31349 * 61.36631 * 10 9 8 12 12 N 1.46920 * 109.58429 * 184.98741 * 6 2 1 13 13 C 1.34775 * 120.63219 * 6.62168 * 12 6 2 14 14 O 1.21343 * 120.00181 * 7.37675 * 13 12 6 15 15 C 1.49454 * 119.99802 * 187.37205 * 13 12 6 16 16 O 1.21340 * 120.00188 * 6.69892 * 15 13 12 17 17 N 1.34775 * 119.99864 * 186.70190 * 15 13 12 18 18 C 1.46495 * 120.00095 * 174.98238 * 17 15 13 19 19 C 1.53001 * 109.47171 * 185.11165 * 18 17 15 20 20 C 1.50696 * 115.55187 * 29.75329 * 19 18 17 21 21 H 1.08004 * 119.99557 * 273.98805 * 20 19 18 22 22 C 1.37879 * 120.00624 * 93.98369 * 20 19 18 23 23 N 1.31511 * 120.00335 * 184.19098 * 22 20 19 24 24 Si 1.86799 * 119.99511 * 4.19117 * 22 20 19 25 25 H 1.48501 * 109.47089 * 94.52051 * 24 22 20 26 26 H 1.48497 * 109.47310 * 214.51674 * 24 22 20 27 27 H 1.48500 * 109.47639 * 334.51816 * 24 22 20 28 28 C 1.53004 * 117.50063 * 244.03986 * 19 18 17 29 29 C 1.53001 * 60.00082 * 252.51097 * 28 19 18 30 30 H 1.09008 * 109.46999 * 184.86411 * 1 2 3 31 31 H 1.08998 * 109.47296 * 304.86153 * 1 2 3 32 32 H 1.09005 * 109.47349 * 64.86875 * 1 2 3 33 33 H 1.08994 * 109.46910 * 185.85033 * 4 2 1 34 34 H 1.09001 * 109.46414 * 305.84456 * 4 2 1 35 35 H 0.96701 * 113.99668 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.63250 * 54.55704 * 8 6 2 37 37 H 1.09001 * 109.45710 * 294.43914 * 8 6 2 38 38 H 1.09002 * 109.46118 * 178.48703 * 9 8 6 39 39 H 1.09006 * 109.44410 * 58.52848 * 9 8 6 40 40 H 1.09001 * 109.49851 * 301.40988 * 10 9 8 41 41 H 1.09005 * 109.49310 * 181.31507 * 10 9 8 42 42 H 1.09004 * 109.58559 * 185.57392 * 11 10 9 43 43 H 1.09001 * 109.58828 * 65.14783 * 11 10 9 44 44 H 0.97005 * 120.00411 * 354.98224 * 17 15 13 45 45 H 1.08992 * 109.47588 * 65.11206 * 18 17 15 46 46 H 1.09001 * 109.47311 * 305.10564 * 18 17 15 47 47 H 0.97005 * 120.00295 * 180.02562 * 23 22 20 48 48 H 1.09001 * 117.49548 * 0.02562 * 28 19 18 49 49 H 1.08997 * 117.49920 * 145.02095 * 28 19 18 50 50 H 1.09004 * 117.49960 * 252.50814 * 29 28 19 51 51 H 1.08997 * 117.49946 * 107.48863 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 1.6790 0.0271 -2.4121 6 6 2.0400 -0.7213 1.2492 7 1 1.6028 -0.2685 2.1391 8 6 1.6562 -2.2072 1.1811 9 6 2.2859 -2.9456 2.3645 10 6 3.8103 -2.8380 2.2822 11 6 4.2190 -1.3637 2.3593 12 7 3.5043 -0.6194 1.3134 13 6 4.1786 0.1465 0.4330 14 8 3.5728 0.8635 -0.3361 15 6 5.6725 0.1128 0.4039 16 8 6.2746 -0.6904 1.0856 17 7 6.3508 0.9745 -0.3795 18 6 7.8142 1.0166 -0.3261 19 6 8.3241 2.1571 -1.2094 20 6 7.3980 3.3381 -1.3451 21 1 6.6245 3.3339 -2.0989 22 6 7.5379 4.4240 -0.5071 23 7 6.6794 5.4182 -0.5700 24 14 8.9471 4.4828 0.7177 25 1 10.0867 5.2285 0.1257 26 1 8.4979 5.1674 1.9566 27 1 9.3770 3.0996 1.0447 28 6 9.1756 1.7832 -2.4244 29 6 9.8285 2.4361 -1.2044 30 1 -0.3633 -1.0240 0.0871 31 1 -0.3634 0.5874 0.8432 32 1 -0.3634 0.4365 -0.9304 33 1 3.1249 -0.8128 -1.1985 34 1 1.5937 -1.7142 -1.3032 35 1 1.9712 -0.3720 -3.2430 36 1 2.0207 -2.6373 0.2482 37 1 0.5715 -2.3045 1.2271 38 1 1.9938 -3.9953 2.3346 39 1 1.9400 -2.4987 3.2966 40 1 4.1546 -3.2622 1.3390 41 1 4.2588 -3.3838 3.1124 42 1 5.2939 -1.2738 2.2021 43 1 3.9559 -0.9622 3.3380 44 1 5.8701 1.5669 -0.9786 45 1 8.2183 0.0703 -0.6855 46 1 8.1358 1.1820 0.7022 47 1 6.7781 6.1823 0.0194 48 1 9.3721 0.7247 -2.5947 49 1 9.0658 2.3913 -3.3223 50 1 10.1483 3.4738 -1.2997 51 1 10.4549 1.8072 -0.5719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118714775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:36 Heat of formation + Delta-G solvation = -76.354962 kcal Electronic energy + Delta-G solvation = -31900.313942 eV Core-core repulsion = 27801.352162 eV Total energy + Delta-G solvation = -4098.961780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46301 -40.45496 -38.84948 -38.61936 -37.74162 -35.34910 -34.90338 -34.25806 -33.71721 -30.44591 -28.98522 -27.68968 -27.20694 -26.62076 -24.94547 -23.88226 -23.44725 -21.71997 -21.59210 -21.14584 -20.10738 -18.66127 -18.34169 -18.25237 -17.61731 -17.30030 -16.99744 -16.61337 -16.40838 -15.97884 -15.88049 -15.59275 -15.19190 -15.01752 -14.81582 -14.62442 -14.49859 -14.37424 -14.20881 -14.06730 -13.74709 -13.47271 -13.43416 -13.10586 -13.00803 -12.78584 -12.71405 -12.43813 -12.13833 -12.00902 -11.89004 -11.72351 -11.61980 -11.47509 -11.41384 -11.04704 -10.92217 -10.69314 -10.62496 -10.43730 -9.94800 -9.69836 -9.62121 -8.30699 -6.39504 0.38693 1.32433 1.37939 1.39680 1.49908 2.17749 2.35320 2.54734 3.02644 3.15145 3.31517 3.48605 3.71703 3.80904 3.99160 4.01597 4.13056 4.16023 4.24712 4.31927 4.32678 4.37057 4.39587 4.49786 4.58831 4.60695 4.68576 4.73808 4.82603 4.84776 4.89306 4.92805 4.98661 5.04212 5.06149 5.09298 5.16576 5.18185 5.21987 5.28783 5.38900 5.46717 5.47877 5.56204 5.67767 5.76988 6.07942 6.26061 6.38059 6.70729 6.82316 6.92727 7.05063 7.31783 8.83355 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003688 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.939069 B = 7589.807836 C = 8251.786424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.087 0.913 4 C 0.100 3.900 5 O -0.585 6.585 6 C 0.149 3.851 7 H 0.090 0.910 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.123 4.123 11 C 0.043 3.957 12 N -0.574 5.574 13 C 0.496 3.504 14 O -0.518 6.518 15 C 0.494 3.506 16 O -0.537 6.537 17 N -0.667 5.667 18 C 0.159 3.841 19 C -0.044 4.044 20 C -0.485 4.485 21 H 0.040 0.960 22 C 0.028 3.972 23 N -0.940 5.940 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.309 1.309 27 H -0.226 1.226 28 C -0.160 4.160 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.386 0.614 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.072 0.928 44 H 0.415 0.585 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.264 0.736 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -19.826 5.627 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.105 0.895 4 C 0.022 3.978 5 O -0.391 6.391 6 C 0.047 3.953 7 H 0.108 0.892 8 C -0.167 4.167 9 C -0.154 4.154 10 C -0.161 4.161 11 C -0.077 4.077 12 N -0.307 5.307 13 C 0.279 3.721 14 O -0.395 6.395 15 C 0.275 3.725 16 O -0.419 6.419 17 N -0.317 5.317 18 C 0.035 3.965 19 C -0.045 4.045 20 C -0.523 4.523 21 H 0.058 0.942 22 C -0.171 4.171 23 N -0.578 5.578 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.237 1.237 27 H -0.149 1.149 28 C -0.197 4.197 29 C -0.225 4.225 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.156 0.844 43 H 0.091 0.909 44 H 0.254 0.746 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.932 -19.423 6.201 21.877 hybrid contribution 0.552 1.005 -0.336 1.194 sum -7.380 -18.418 5.865 20.690 Atomic orbital electron populations 1.21820 0.93422 1.02607 1.01786 1.21729 0.96556 1.02109 0.92207 0.89519 1.22328 0.96990 0.92915 0.85546 1.86454 1.81661 1.53885 1.17128 1.21688 0.77620 0.97658 0.98359 0.89181 1.22166 1.02356 0.92390 0.99754 1.21565 0.94405 1.01351 0.98129 1.21808 0.96926 0.94605 1.02780 1.23295 1.02830 0.92214 0.89373 1.48055 1.07573 1.44930 1.30185 1.20104 0.88091 0.81651 0.82240 1.90870 1.67783 1.39438 1.41416 1.20510 0.89143 0.81872 0.80948 1.90252 1.70147 1.38543 1.42971 1.46037 1.08610 1.36876 1.40190 1.21069 0.78190 0.97777 0.99447 1.19536 0.90546 0.95578 0.98889 1.20239 1.15349 0.99505 1.17214 0.94171 1.25809 0.98025 0.94911 0.98379 1.70054 1.37911 1.09576 1.40302 0.86005 0.79704 0.80392 0.77811 1.19819 1.23698 1.14887 1.23051 1.03855 1.00540 0.92273 1.23002 0.95687 1.00820 1.03023 0.90826 0.92106 0.93248 0.95860 0.93081 0.76579 0.91836 0.88292 0.89839 0.90818 0.92731 0.89038 0.84418 0.90931 0.74584 0.90318 0.92453 0.92692 0.87391 0.90168 0.90684 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.03 71.98 0.65 -2.37 16 2 C -0.11 -2.94 1.87 -10.79 -0.02 -2.96 16 3 H 0.09 3.19 5.62 -26.34 -0.15 3.04 16 4 C 0.10 2.76 4.58 71.99 0.33 3.09 16 5 O -0.58 -17.67 13.15 -148.72 -1.96 -19.62 16 6 C 0.15 3.35 2.67 45.12 0.12 3.47 16 7 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 8 C -0.13 -2.05 4.68 30.82 0.14 -1.91 16 9 C -0.12 -1.56 5.88 30.62 0.18 -1.38 16 10 C -0.12 -2.11 6.08 30.67 0.19 -1.93 16 11 C 0.04 1.01 6.26 86.36 0.54 1.55 16 12 N -0.57 -15.72 2.92 -795.80 -2.32 -18.04 16 13 C 0.50 17.40 6.13 87.27 0.54 17.93 16 14 O -0.52 -20.74 10.58 -2.96 -0.03 -20.78 16 15 C 0.49 18.36 7.77 87.27 0.68 19.04 16 16 O -0.54 -19.46 13.12 -3.21 -0.04 -19.50 16 17 N -0.67 -26.93 5.29 -464.43 -2.46 -29.39 16 18 C 0.16 6.10 5.85 86.38 0.51 6.61 16 19 C -0.04 -1.87 1.42 -52.93 -0.07 -1.94 16 20 C -0.49 -25.80 7.80 25.60 0.20 -25.60 16 21 H 0.04 2.41 7.95 -2.91 -0.02 2.39 16 22 C 0.03 1.55 5.47 84.66 0.46 2.01 16 23 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 24 Si 0.93 43.32 24.85 68.60 1.70 45.03 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.23 -9.35 5.75 99.48 0.57 -8.78 16 28 C -0.16 -5.68 9.88 30.60 0.30 -5.38 16 29 C -0.19 -6.98 6.91 30.60 0.21 -6.77 16 30 H 0.07 1.21 6.53 -2.38 -0.02 1.19 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.23 7.73 -2.38 -0.02 1.21 16 33 H 0.02 0.74 5.17 -2.39 -0.01 0.73 16 34 H 0.05 1.14 6.59 -2.39 -0.02 1.12 16 35 H 0.39 8.33 9.12 -74.06 -0.68 7.66 16 36 H 0.06 1.12 6.20 -2.38 -0.01 1.11 16 37 H 0.10 1.18 6.79 -2.39 -0.02 1.17 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.14 3.94 3.81 -77.03 -0.29 3.64 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.42 18.67 6.58 -92.70 -0.61 18.06 16 45 H 0.08 2.64 7.88 -2.39 -0.02 2.62 16 46 H 0.06 2.26 7.80 -2.39 -0.02 2.25 16 47 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 48 H 0.11 3.13 8.03 -2.39 -0.02 3.11 16 49 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 50 H 0.07 3.01 6.12 -2.39 -0.01 2.99 16 51 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -68.20 379.60 -0.73 -68.93 By element: Atomic # 1 Polarization: 48.21 SS G_CDS: -0.87 Total: 47.33 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.95 Total: 3.47 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.48 Total: -104.85 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -2.03 Total: -59.90 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.70 Total: 45.03 kcal Total: -68.20 -0.73 -68.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118714775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.428 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds