Wall clock time and date at job start Tue Mar 31 2020 21:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46969 * 2 1 4 4 C 1.52995 * 109.47039 * 120.00689 * 2 1 3 5 5 O 1.42907 * 109.46935 * 299.27843 * 4 2 1 6 6 C 1.53002 * 109.46891 * 240.00409 * 2 1 3 7 7 H 1.08993 * 109.70053 * 185.48393 * 6 2 1 8 8 C 1.53621 * 109.66475 * 306.07772 * 6 2 1 9 9 C 1.53036 * 109.24411 * 174.55252 * 8 6 2 10 10 C 1.53039 * 109.53542 * 298.50580 * 9 8 6 11 11 C 1.53196 * 109.31376 * 61.36547 * 10 9 8 12 12 N 1.46927 * 108.77426 * 305.36768 * 11 10 9 13 13 C 1.34774 * 120.62914 * 233.58776 * 12 11 10 14 14 O 1.21348 * 120.00338 * 187.82576 * 13 12 11 15 15 C 1.49450 * 120.00184 * 7.81501 * 13 12 11 16 16 O 1.21353 * 119.99919 * 6.76581 * 15 13 12 17 17 N 1.34771 * 120.00297 * 186.75578 * 15 13 12 18 18 C 1.46501 * 120.00107 * 174.98633 * 17 15 13 19 19 C 1.53006 * 109.47019 * 185.05114 * 18 17 15 20 20 C 1.50687 * 115.55057 * 29.50414 * 19 18 17 21 21 H 1.08002 * 120.00225 * 274.57122 * 20 19 18 22 22 C 1.37880 * 120.00073 * 94.57729 * 20 19 18 23 23 N 1.31515 * 120.00080 * 184.65672 * 22 20 19 24 24 Si 1.86796 * 120.00100 * 4.64878 * 22 20 19 25 25 H 1.48502 * 109.46868 * 94.79838 * 24 22 20 26 26 H 1.48499 * 109.47370 * 214.80179 * 24 22 20 27 27 H 1.48500 * 109.47197 * 334.80202 * 24 22 20 28 28 C 1.53006 * 117.49626 * 243.79203 * 19 18 17 29 29 C 1.52999 * 60.00222 * 252.51520 * 28 19 18 30 30 H 1.09000 * 109.46939 * 305.51004 * 1 2 3 31 31 H 1.09000 * 109.47184 * 65.50668 * 1 2 3 32 32 H 1.08998 * 109.47163 * 185.50990 * 1 2 3 33 33 H 1.08992 * 109.47610 * 59.28220 * 4 2 1 34 34 H 1.08999 * 109.46992 * 179.28239 * 4 2 1 35 35 H 0.96701 * 113.99873 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.63785 * 54.55452 * 8 6 2 37 37 H 1.09011 * 109.45962 * 294.43381 * 8 6 2 38 38 H 1.09004 * 109.46344 * 178.48543 * 9 8 6 39 39 H 1.08996 * 109.45229 * 58.52341 * 9 8 6 40 40 H 1.08998 * 109.50006 * 301.41503 * 10 9 8 41 41 H 1.09008 * 109.52636 * 181.33005 * 10 9 8 42 42 H 1.08997 * 109.58719 * 185.57889 * 11 10 9 43 43 H 1.09007 * 109.58338 * 65.15167 * 11 10 9 44 44 H 0.97001 * 120.00318 * 354.99979 * 17 15 13 45 45 H 1.08997 * 109.46851 * 65.05516 * 18 17 15 46 46 H 1.09001 * 109.47652 * 305.05341 * 18 17 15 47 47 H 0.97003 * 120.00435 * 179.97438 * 23 22 20 48 48 H 1.08995 * 117.49790 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.49592 * 145.02179 * 28 19 18 50 50 H 1.08999 * 117.49847 * 252.51433 * 29 28 19 51 51 H 1.08995 * 117.50061 * 107.48810 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.5775 -0.0381 2.4159 6 6 2.0400 -0.7212 -1.2493 7 1 3.1255 -0.8091 -1.2055 8 6 1.4091 -2.1194 -1.3328 9 6 1.8176 -2.7791 -2.6519 10 6 1.2961 -1.9451 -3.8243 11 6 1.9205 -0.5472 -3.7690 12 7 1.6552 0.0373 -2.4474 13 6 1.0749 1.2486 -2.3363 14 8 0.9896 1.7833 -1.2503 15 6 0.5367 1.9336 -3.5507 16 8 0.5103 1.3505 -4.6146 17 7 0.0806 3.1988 -3.4642 18 6 -0.3445 3.9085 -4.6733 19 6 -0.6952 5.3551 -4.3189 20 6 0.0579 5.9391 -3.1517 21 1 -0.2994 5.7810 -2.1448 22 6 1.2032 6.6755 -3.3690 23 7 1.9108 7.1076 -2.3481 24 14 1.7499 7.0591 -5.1135 25 1 1.2360 8.3945 -5.5108 26 1 3.2335 7.0602 -5.1784 27 1 1.2148 6.0277 -6.0381 28 6 -2.1457 5.7995 -4.5181 29 6 -1.0557 6.2968 -5.4697 30 1 -0.3633 0.5969 0.8365 31 1 -0.3633 0.4261 -0.9352 32 1 -0.3633 -1.0229 0.0987 33 1 1.6663 -1.7452 1.2555 34 1 3.1299 -0.7325 1.2427 35 1 1.8639 -0.4409 3.2471 36 1 0.3233 -2.0345 -1.2894 37 1 1.7602 -2.7266 -0.4983 38 1 1.3938 -3.7821 -2.7029 39 1 2.9045 -2.8411 -2.7054 40 1 0.2113 -1.8618 -3.7574 41 1 1.5668 -2.4276 -4.7635 42 1 1.4784 0.0813 -4.5420 43 1 2.9966 -0.6213 -3.9265 44 1 0.0339 3.6397 -2.6014 45 1 -1.2202 3.4153 -5.0951 46 1 0.4647 3.8993 -5.4035 47 1 2.7168 7.6253 -2.5010 48 1 -2.8501 5.0612 -4.9012 49 1 -2.5555 6.5144 -3.8046 50 1 -0.7484 7.3389 -5.3822 51 1 -1.0429 5.8858 -6.4791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118714777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:42 Heat of formation + Delta-G solvation = -54.149377 kcal Electronic energy + Delta-G solvation = -31656.724741 eV Core-core repulsion = 27558.725868 eV Total energy + Delta-G solvation = -4097.998873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20174 -39.05907 -37.47422 -37.28076 -36.87305 -33.98253 -33.70653 -32.63880 -32.19278 -29.41880 -27.43800 -26.55934 -25.78991 -25.16564 -24.01938 -22.63340 -21.87688 -20.75014 -20.30091 -19.55654 -18.78511 -17.54202 -17.14467 -16.52087 -16.13286 -15.98778 -15.43568 -15.21694 -15.17778 -14.98120 -14.57895 -14.44947 -14.10964 -13.89274 -13.75214 -13.41370 -13.22504 -13.01450 -12.85011 -12.51776 -12.45001 -12.34084 -12.03234 -11.85438 -11.61640 -11.27305 -11.19949 -11.00096 -10.96242 -10.82037 -10.74820 -10.46657 -10.44456 -10.27545 -9.98813 -9.72218 -9.58222 -9.18979 -8.80090 -8.62114 -8.54584 -8.40845 -8.31997 -6.20514 -4.27237 1.79360 2.63562 3.23437 3.35602 3.38861 3.58391 3.80136 4.22608 4.34706 4.62499 4.68270 4.74852 4.80107 4.88760 4.96958 5.09064 5.12234 5.13368 5.22109 5.26401 5.37888 5.48073 5.59101 5.63305 5.70456 5.76227 5.81907 5.83384 5.89598 5.93408 6.00611 6.01501 6.10580 6.18920 6.22447 6.25120 6.35105 6.37537 6.40458 6.62570 6.62945 6.76215 6.83030 7.02498 7.11158 7.30570 7.60488 7.61881 7.83848 8.23958 8.35000 8.55320 8.80140 9.41360 10.89686 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.003583 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.410651 B = 7813.504998 C = 8752.017563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 H 0.130 0.870 4 C 0.079 3.921 5 O -0.565 6.565 6 C 0.153 3.847 7 H 0.074 0.926 8 C -0.135 4.135 9 C -0.122 4.122 10 C -0.128 4.128 11 C 0.049 3.951 12 N -0.580 5.580 13 C 0.506 3.494 14 O -0.494 6.494 15 C 0.496 3.504 16 O -0.538 6.538 17 N -0.653 5.653 18 C 0.152 3.848 19 C -0.016 4.016 20 C -0.500 4.500 21 H 0.083 0.917 22 C 0.084 3.916 23 N -0.885 5.885 24 Si 0.881 3.119 25 H -0.281 1.281 26 H -0.297 1.297 27 H -0.253 1.253 28 C -0.181 4.181 29 C -0.192 4.192 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.373 0.627 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.058 0.942 44 H 0.426 0.574 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.266 0.734 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -19.339 0.937 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.125 4.125 3 H 0.148 0.852 4 C 0.001 3.999 5 O -0.369 6.369 6 C 0.050 3.950 7 H 0.091 0.909 8 C -0.173 4.173 9 C -0.159 4.159 10 C -0.167 4.167 11 C -0.072 4.072 12 N -0.315 5.315 13 C 0.290 3.710 14 O -0.369 6.369 15 C 0.277 3.723 16 O -0.420 6.420 17 N -0.304 5.304 18 C 0.028 3.972 19 C -0.017 4.017 20 C -0.537 4.537 21 H 0.101 0.899 22 C -0.121 4.121 23 N -0.521 5.521 24 Si 0.709 3.291 25 H -0.207 1.207 26 H -0.224 1.224 27 H -0.177 1.177 28 C -0.218 4.218 29 C -0.230 4.230 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.219 0.781 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.177 0.823 43 H 0.077 0.923 44 H 0.267 0.733 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.159 -18.890 0.409 18.895 hybrid contribution 0.849 -0.036 -0.102 0.856 sum 1.008 -18.926 0.308 18.955 Atomic orbital electron populations 1.21847 0.94190 0.99584 1.02577 1.21921 0.97903 1.02777 0.89912 0.85214 1.22316 0.96830 0.94419 0.86373 1.86561 1.77918 1.56670 1.15732 1.21345 0.98473 0.90719 0.84512 0.90852 1.22184 1.02090 0.95198 0.97844 1.21568 1.00872 0.98731 0.94768 1.21835 1.01157 0.95449 0.98224 1.23264 1.00828 0.96839 0.86236 1.47822 1.58966 1.16963 1.07717 1.20173 0.79391 0.82038 0.89448 1.90775 1.55109 1.64327 1.26706 1.20188 0.80112 0.83388 0.88652 1.90224 1.57466 1.63805 1.30527 1.45981 1.59135 1.11446 1.13876 1.21125 0.98425 0.92283 0.85358 1.19618 0.94971 0.90469 0.96673 1.20135 1.08547 1.33320 0.91745 0.89945 1.25020 0.95526 0.94586 0.96936 1.69903 1.15843 1.35695 1.30612 0.86879 0.76920 0.79436 0.85863 1.20688 1.22433 1.17748 1.23024 0.92337 1.03614 1.02822 1.22918 1.05611 1.00073 0.94372 0.92109 0.92580 0.94505 0.94264 0.94177 0.78089 0.90671 0.91011 0.91937 0.92017 0.91557 0.90943 0.82264 0.92343 0.73309 0.92628 0.91766 0.92369 0.90778 0.89314 0.89436 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 7.17 37.16 0.27 -1.55 16 2 C -0.11 -1.47 1.90 -90.62 -0.17 -1.64 16 3 H 0.13 2.26 5.60 -53.52 -0.30 1.96 16 4 C 0.08 0.87 6.24 37.16 0.23 1.10 16 5 O -0.56 -6.86 13.12 -35.23 -0.46 -7.32 16 6 C 0.15 1.84 2.67 -67.37 -0.18 1.66 16 7 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.14 -1.31 4.67 -26.39 -0.12 -1.43 16 9 C -0.12 -1.06 5.88 -26.69 -0.16 -1.22 16 10 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 11 C 0.05 0.62 6.26 -3.71 -0.02 0.60 16 12 N -0.58 -8.22 2.92 -165.47 -0.48 -8.70 16 13 C 0.51 8.74 6.13 -11.59 -0.07 8.67 16 14 O -0.49 -9.42 10.59 5.50 0.06 -9.36 16 15 C 0.50 9.20 7.77 -11.59 -0.09 9.11 16 16 O -0.54 -9.98 13.13 5.49 0.07 -9.91 16 17 N -0.65 -13.05 5.29 -60.73 -0.32 -13.37 16 18 C 0.15 3.03 5.85 -4.04 -0.02 3.01 16 19 C -0.02 -0.35 1.45 -155.66 -0.23 -0.57 16 20 C -0.50 -12.91 7.80 -34.45 -0.27 -13.18 16 21 H 0.08 2.33 7.93 -52.49 -0.42 1.91 16 22 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 23 N -0.89 -25.89 13.96 55.43 0.77 -25.11 16 24 Si 0.88 20.93 24.83 -169.99 -4.22 16.71 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.25 -5.65 5.80 56.52 0.33 -5.33 16 28 C -0.18 -3.44 9.88 -26.73 -0.26 -3.71 16 29 C -0.19 -3.86 6.86 -26.73 -0.18 -4.04 16 30 H 0.06 0.98 7.87 -51.93 -0.41 0.57 16 31 H 0.06 0.91 5.19 -51.93 -0.27 0.64 16 32 H 0.04 0.46 6.57 -51.93 -0.34 0.12 16 33 H 0.04 0.36 6.78 -51.93 -0.35 0.01 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.37 2.61 9.12 45.56 0.42 3.03 16 36 H 0.07 0.81 6.19 -51.93 -0.32 0.49 16 37 H 0.07 0.57 6.92 -51.92 -0.36 0.22 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.16 2.37 3.82 -56.61 -0.22 2.16 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.43 9.11 6.56 -40.82 -0.27 8.84 16 45 H 0.06 1.02 7.88 -51.93 -0.41 0.61 16 46 H 0.06 1.33 7.93 -51.93 -0.41 0.91 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 49 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 50 H 0.09 1.86 6.02 -51.93 -0.31 1.55 16 51 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -29.98 379.91 -7.80 -37.78 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.40 Total: 16.06 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.54 Total: -2.51 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.03 Total: -47.18 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.33 Total: -26.59 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.22 Total: 16.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.98 -7.80 -37.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118714777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.367 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds