Wall clock time and date at job start Tue Mar 31 2020 21:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46969 * 2 1 4 4 C 1.52995 * 109.47039 * 120.00689 * 2 1 3 5 5 O 1.42907 * 109.46935 * 299.27843 * 4 2 1 6 6 C 1.53002 * 109.46891 * 240.00409 * 2 1 3 7 7 H 1.08993 * 109.70053 * 185.48393 * 6 2 1 8 8 C 1.53621 * 109.66475 * 306.07772 * 6 2 1 9 9 C 1.53036 * 109.24411 * 174.55252 * 8 6 2 10 10 C 1.53039 * 109.53542 * 298.50580 * 9 8 6 11 11 C 1.53196 * 109.31376 * 61.36547 * 10 9 8 12 12 N 1.46927 * 108.77426 * 305.36768 * 11 10 9 13 13 C 1.34774 * 120.62914 * 233.58776 * 12 11 10 14 14 O 1.21348 * 120.00338 * 187.82576 * 13 12 11 15 15 C 1.49450 * 120.00184 * 7.81501 * 13 12 11 16 16 O 1.21353 * 119.99919 * 6.76581 * 15 13 12 17 17 N 1.34771 * 120.00297 * 186.75578 * 15 13 12 18 18 C 1.46501 * 120.00107 * 174.98633 * 17 15 13 19 19 C 1.53006 * 109.47019 * 185.05114 * 18 17 15 20 20 C 1.50687 * 115.55057 * 29.50414 * 19 18 17 21 21 H 1.08002 * 120.00225 * 274.57122 * 20 19 18 22 22 C 1.37880 * 120.00073 * 94.57729 * 20 19 18 23 23 N 1.31515 * 120.00080 * 184.65672 * 22 20 19 24 24 Si 1.86796 * 120.00100 * 4.64878 * 22 20 19 25 25 H 1.48502 * 109.46868 * 94.79838 * 24 22 20 26 26 H 1.48499 * 109.47370 * 214.80179 * 24 22 20 27 27 H 1.48500 * 109.47197 * 334.80202 * 24 22 20 28 28 C 1.53006 * 117.49626 * 243.79203 * 19 18 17 29 29 C 1.52999 * 60.00222 * 252.51520 * 28 19 18 30 30 H 1.09000 * 109.46939 * 305.51004 * 1 2 3 31 31 H 1.09000 * 109.47184 * 65.50668 * 1 2 3 32 32 H 1.08998 * 109.47163 * 185.50990 * 1 2 3 33 33 H 1.08992 * 109.47610 * 59.28220 * 4 2 1 34 34 H 1.08999 * 109.46992 * 179.28239 * 4 2 1 35 35 H 0.96701 * 113.99873 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.63785 * 54.55452 * 8 6 2 37 37 H 1.09011 * 109.45962 * 294.43381 * 8 6 2 38 38 H 1.09004 * 109.46344 * 178.48543 * 9 8 6 39 39 H 1.08996 * 109.45229 * 58.52341 * 9 8 6 40 40 H 1.08998 * 109.50006 * 301.41503 * 10 9 8 41 41 H 1.09008 * 109.52636 * 181.33005 * 10 9 8 42 42 H 1.08997 * 109.58719 * 185.57889 * 11 10 9 43 43 H 1.09007 * 109.58338 * 65.15167 * 11 10 9 44 44 H 0.97001 * 120.00318 * 354.99979 * 17 15 13 45 45 H 1.08997 * 109.46851 * 65.05516 * 18 17 15 46 46 H 1.09001 * 109.47652 * 305.05341 * 18 17 15 47 47 H 0.97003 * 120.00435 * 179.97438 * 23 22 20 48 48 H 1.08995 * 117.49790 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.49592 * 145.02179 * 28 19 18 50 50 H 1.08999 * 117.49847 * 252.51433 * 29 28 19 51 51 H 1.08995 * 117.50061 * 107.48810 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.5775 -0.0381 2.4159 6 6 2.0400 -0.7212 -1.2493 7 1 3.1255 -0.8091 -1.2055 8 6 1.4091 -2.1194 -1.3328 9 6 1.8176 -2.7791 -2.6519 10 6 1.2961 -1.9451 -3.8243 11 6 1.9205 -0.5472 -3.7690 12 7 1.6552 0.0373 -2.4474 13 6 1.0749 1.2486 -2.3363 14 8 0.9896 1.7833 -1.2503 15 6 0.5367 1.9336 -3.5507 16 8 0.5103 1.3505 -4.6146 17 7 0.0806 3.1988 -3.4642 18 6 -0.3445 3.9085 -4.6733 19 6 -0.6952 5.3551 -4.3189 20 6 0.0579 5.9391 -3.1517 21 1 -0.2994 5.7810 -2.1448 22 6 1.2032 6.6755 -3.3690 23 7 1.9108 7.1076 -2.3481 24 14 1.7499 7.0591 -5.1135 25 1 1.2360 8.3945 -5.5108 26 1 3.2335 7.0602 -5.1784 27 1 1.2148 6.0277 -6.0381 28 6 -2.1457 5.7995 -4.5181 29 6 -1.0557 6.2968 -5.4697 30 1 -0.3633 0.5969 0.8365 31 1 -0.3633 0.4261 -0.9352 32 1 -0.3633 -1.0229 0.0987 33 1 1.6663 -1.7452 1.2555 34 1 3.1299 -0.7325 1.2427 35 1 1.8639 -0.4409 3.2471 36 1 0.3233 -2.0345 -1.2894 37 1 1.7602 -2.7266 -0.4983 38 1 1.3938 -3.7821 -2.7029 39 1 2.9045 -2.8411 -2.7054 40 1 0.2113 -1.8618 -3.7574 41 1 1.5668 -2.4276 -4.7635 42 1 1.4784 0.0813 -4.5420 43 1 2.9966 -0.6213 -3.9265 44 1 0.0339 3.6397 -2.6014 45 1 -1.2202 3.4153 -5.0951 46 1 0.4647 3.8993 -5.4035 47 1 2.7168 7.6253 -2.5010 48 1 -2.8501 5.0612 -4.9012 49 1 -2.5555 6.5144 -3.8046 50 1 -0.7484 7.3389 -5.3822 51 1 -1.0429 5.8858 -6.4791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118714777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:41 Heat of formation + Delta-G solvation = -77.127308 kcal Electronic energy + Delta-G solvation = -31657.721139 eV Core-core repulsion = 27558.725868 eV Total energy + Delta-G solvation = -4098.995271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43340 -40.43586 -38.85019 -38.65617 -37.86683 -35.30827 -34.84571 -34.25793 -33.71041 -30.37226 -28.94982 -27.71577 -27.53980 -26.45489 -24.96015 -23.81927 -23.46229 -21.70249 -21.58022 -21.14886 -20.09898 -18.69608 -18.31147 -18.24709 -17.48961 -17.26191 -16.98746 -16.55889 -16.38554 -16.13271 -15.97654 -15.62071 -15.23093 -15.01749 -14.90571 -14.75379 -14.55788 -14.39008 -14.21983 -14.09882 -13.93026 -13.45662 -13.16447 -13.08241 -12.86751 -12.78191 -12.67645 -12.18515 -12.15343 -12.01181 -11.92838 -11.82073 -11.61831 -11.47014 -11.41100 -11.03661 -10.91596 -10.79761 -10.61254 -10.43521 -9.94611 -9.69055 -9.62276 -8.30747 -6.39591 0.39229 1.32788 1.38319 1.40090 1.50471 2.18261 2.35579 2.53203 3.02205 3.14092 3.30017 3.50639 3.77775 3.91442 3.93578 4.00061 4.09515 4.18992 4.22980 4.31980 4.33316 4.36326 4.37797 4.51242 4.59123 4.60955 4.68675 4.72502 4.80889 4.84292 4.90311 4.91826 4.98742 5.03481 5.05117 5.06245 5.16251 5.18029 5.22630 5.30668 5.41062 5.47604 5.51327 5.57048 5.68070 5.77984 6.08262 6.26027 6.38408 6.70493 6.82491 6.98630 7.05719 7.31609 8.83316 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.003583 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.410651 B = 7813.504998 C = 8752.017563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.108 4.108 3 H 0.086 0.914 4 C 0.082 3.918 5 O -0.594 6.594 6 C 0.149 3.851 7 H 0.090 0.910 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.124 4.124 11 C 0.044 3.956 12 N -0.571 5.571 13 C 0.500 3.500 14 O -0.523 6.523 15 C 0.494 3.506 16 O -0.537 6.537 17 N -0.668 5.668 18 C 0.159 3.841 19 C -0.044 4.044 20 C -0.487 4.487 21 H 0.040 0.960 22 C 0.027 3.973 23 N -0.940 5.940 24 Si 0.936 3.064 25 H -0.273 1.273 26 H -0.308 1.308 27 H -0.225 1.225 28 C -0.162 4.162 29 C -0.187 4.187 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.395 0.605 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.074 0.926 44 H 0.415 0.585 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.264 0.736 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -22.627 -0.956 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.126 4.126 3 H 0.104 0.896 4 C 0.004 3.996 5 O -0.402 6.402 6 C 0.047 3.953 7 H 0.108 0.892 8 C -0.167 4.167 9 C -0.154 4.154 10 C -0.162 4.162 11 C -0.076 4.076 12 N -0.305 5.305 13 C 0.283 3.717 14 O -0.400 6.400 15 C 0.275 3.725 16 O -0.419 6.419 17 N -0.318 5.318 18 C 0.035 3.965 19 C -0.045 4.045 20 C -0.524 4.524 21 H 0.058 0.942 22 C -0.171 4.171 23 N -0.578 5.578 24 Si 0.762 3.238 25 H -0.199 1.199 26 H -0.237 1.237 27 H -0.147 1.147 28 C -0.199 4.199 29 C -0.224 4.224 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.244 0.756 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.155 0.845 43 H 0.092 0.908 44 H 0.254 0.746 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.108 -22.241 -1.514 22.293 hybrid contribution 0.811 0.929 0.579 1.363 sum 0.919 -21.312 -0.935 21.352 Atomic orbital electron populations 1.21723 0.95199 1.00103 1.00198 1.21743 0.97021 1.01242 0.92602 0.89612 1.22301 0.97673 0.94934 0.84667 1.86514 1.78499 1.57928 1.17240 1.21576 0.99532 0.91542 0.82623 0.89244 1.22175 1.01198 0.93564 0.99751 1.21563 1.01764 0.99088 0.92996 1.21812 1.00133 0.94060 1.00177 1.23291 1.01826 0.97854 0.84644 1.47973 1.57272 1.15854 1.09375 1.20059 0.80089 0.83066 0.88526 1.90814 1.56626 1.65333 1.27272 1.20508 0.79678 0.82978 0.89290 1.90257 1.57212 1.63756 1.30692 1.46045 1.60163 1.12195 1.13385 1.21069 0.99035 0.91170 0.85184 1.19539 0.96910 0.91625 0.96476 1.20239 1.08325 1.32137 0.91717 0.94206 1.25822 0.95847 0.94869 1.00611 1.70057 1.16843 1.37916 1.33026 0.86002 0.75735 0.80228 0.81880 1.19871 1.23682 1.14750 1.23060 0.91462 1.03468 1.01867 1.23000 1.05143 0.98965 0.95307 0.94640 0.94854 0.92207 0.91431 0.92622 0.75604 0.91805 0.88274 0.89890 0.90676 0.92906 0.89020 0.84488 0.90759 0.74597 0.90375 0.92355 0.92675 0.87434 0.90187 0.90676 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 7.17 71.98 0.52 -2.92 16 2 C -0.11 -2.95 1.90 -10.79 -0.02 -2.97 16 3 H 0.09 3.17 5.60 -27.57 -0.15 3.01 16 4 C 0.08 1.66 6.24 71.98 0.45 2.11 16 5 O -0.59 -14.08 13.12 -148.98 -1.95 -16.03 16 6 C 0.15 3.35 2.67 45.12 0.12 3.47 16 7 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 8 C -0.13 -2.06 4.67 30.82 0.14 -1.91 16 9 C -0.12 -1.55 5.88 30.62 0.18 -1.37 16 10 C -0.12 -2.17 6.08 30.67 0.19 -1.99 16 11 C 0.04 1.04 6.26 86.36 0.54 1.58 16 12 N -0.57 -15.91 2.92 -795.79 -2.32 -18.24 16 13 C 0.50 17.91 6.13 87.27 0.54 18.44 16 14 O -0.52 -21.39 10.59 -3.24 -0.03 -21.42 16 15 C 0.49 18.74 7.77 87.27 0.68 19.42 16 16 O -0.54 -19.81 13.13 -3.26 -0.04 -19.86 16 17 N -0.67 -27.46 5.29 -464.40 -2.46 -29.92 16 18 C 0.16 6.20 5.85 86.38 0.51 6.70 16 19 C -0.04 -1.89 1.45 -52.93 -0.08 -1.97 16 20 C -0.49 -26.07 7.80 25.60 0.20 -25.87 16 21 H 0.04 2.41 7.93 -2.91 -0.02 2.39 16 22 C 0.03 1.54 5.47 84.66 0.46 2.00 16 23 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 24 Si 0.94 43.43 24.83 68.60 1.70 45.14 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.23 -9.30 5.80 99.48 0.58 -8.73 16 28 C -0.16 -5.83 9.88 30.60 0.30 -5.52 16 29 C -0.19 -7.01 6.86 30.60 0.21 -6.80 16 30 H 0.03 1.20 7.87 -2.39 -0.02 1.18 16 31 H 0.03 1.12 5.19 -2.39 -0.01 1.11 16 32 H 0.06 1.45 6.57 -2.39 -0.02 1.44 16 33 H 0.07 0.99 6.78 -2.39 -0.02 0.98 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.39 5.01 9.12 -74.06 -0.68 4.34 16 36 H 0.06 1.19 6.19 -2.39 -0.01 1.18 16 37 H 0.10 1.10 6.92 -2.38 -0.02 1.08 16 38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.14 3.97 3.82 -76.52 -0.29 3.68 16 43 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 44 H 0.42 18.97 6.56 -92.71 -0.61 18.36 16 45 H 0.08 2.68 7.88 -2.39 -0.02 2.66 16 46 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.11 3.19 8.03 -2.39 -0.02 3.17 16 49 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 50 H 0.07 3.03 6.02 -2.39 -0.01 3.01 16 51 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -69.99 379.91 -0.75 -70.74 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -0.87 Total: 44.76 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.93 Total: 2.41 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.48 Total: -105.74 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -2.03 Total: -57.31 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.70 Total: 45.14 kcal Total: -69.99 -0.75 -70.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118714777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.387 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds