Wall clock time and date at job start Tue Mar 31 2020 21:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 O 1.42902 * 109.47195 * 240.00381 * 2 1 3 5 5 C 1.42902 * 113.99853 * 89.99956 * 4 2 1 6 6 C 1.53003 * 109.46994 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.82593 * 305.70029 * 6 5 4 8 8 C 1.54382 * 109.82797 * 184.81040 * 6 5 4 9 9 C 1.55449 * 102.18577 * 219.18045 * 8 6 5 10 10 C 1.54940 * 100.98897 * 34.04620 * 9 8 6 11 11 O 1.43235 * 109.83096 * 66.58812 * 6 5 4 12 12 C 1.50700 * 109.47214 * 120.00499 * 2 1 3 13 13 O 1.21286 * 119.99841 * 115.00447 * 12 2 1 14 14 N 1.34776 * 119.99805 * 294.99514 * 12 2 1 15 15 C 1.47885 * 134.33936 * 179.97438 * 14 12 2 16 16 C 1.52368 * 85.58964 * 156.48622 * 15 14 12 17 17 C 1.47887 * 134.34262 * 359.96292 * 14 12 2 18 18 C 1.53658 * 116.39717 * 141.35074 * 16 15 14 19 19 C 1.54607 * 102.73022 * 162.91744 * 18 16 15 20 20 N 1.47137 * 107.36428 * 339.24245 * 19 18 16 21 21 C 1.36938 * 125.58257 * 179.11256 * 20 19 18 22 22 H 1.08002 * 119.99870 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00021 * 359.97336 * 21 20 19 24 24 N 1.31613 * 120.00192 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99551 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47191 * 60.00493 * 25 23 21 27 27 H 1.48509 * 109.46978 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47484 * 299.99757 * 25 23 21 29 29 C 1.47725 * 108.82669 * 359.07915 * 20 19 18 30 30 H 1.08999 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46903 * 299.99455 * 1 2 3 32 32 H 1.08999 * 109.47337 * 59.99944 * 1 2 3 33 33 H 1.09000 * 109.46921 * 300.00097 * 5 4 2 34 34 H 1.08997 * 109.47661 * 60.00059 * 5 4 2 35 35 H 1.08992 * 110.85311 * 337.32410 * 8 6 5 36 36 H 1.09009 * 110.84485 * 100.93986 * 8 6 5 37 37 H 1.08995 * 111.06349 * 276.12582 * 9 8 6 38 38 H 1.08999 * 111.18037 * 152.01128 * 9 8 6 39 39 H 1.09001 * 110.31126 * 204.69422 * 10 9 8 40 40 H 1.09002 * 110.39732 * 82.56157 * 10 9 8 41 41 H 1.09005 * 113.85578 * 42.32235 * 15 14 12 42 42 H 1.09003 * 113.85653 * 270.65258 * 15 14 12 43 43 H 1.08995 * 113.85518 * 89.34905 * 17 14 12 44 44 H 1.09002 * 113.85341 * 317.67535 * 17 14 12 45 45 H 1.08993 * 110.76200 * 44.60660 * 18 16 15 46 46 H 1.09003 * 110.75888 * 281.22670 * 18 16 15 47 47 H 1.08997 * 109.86564 * 98.69116 * 19 18 16 48 48 H 1.09000 * 109.86527 * 219.65895 * 19 18 16 49 49 H 0.97004 * 119.99629 * 179.97438 * 24 23 21 50 50 H 1.08994 * 110.39981 * 141.25248 * 29 20 19 51 51 H 1.09000 * 110.39188 * 263.54275 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1831 -2.2941 6 6 2.7079 -0.6405 -3.4793 7 1 3.5999 -1.1954 -3.1887 8 6 3.0348 0.2934 -4.6643 9 6 2.5301 -0.5316 -5.8812 10 6 1.3053 -1.2512 -5.2627 11 8 1.6891 -1.5501 -3.9110 12 6 2.0323 -0.7105 1.2304 13 8 2.6531 -1.7468 1.1213 14 7 1.7920 -0.1943 2.4520 15 6 2.1233 -0.6084 3.8325 16 6 1.9628 0.8647 4.1873 17 6 1.0922 1.0116 2.9451 18 6 1.2893 1.1737 5.5334 19 6 1.6797 2.6494 5.7789 20 7 2.8660 2.9325 4.9557 21 6 3.5121 4.1373 4.8770 22 1 4.3786 4.2449 4.2414 23 6 3.0534 5.2204 5.6142 24 7 1.9977 5.0893 6.3892 25 14 3.9344 6.8640 5.5061 26 1 3.9082 7.3484 4.1026 27 1 3.2528 7.8497 6.3833 28 1 5.3429 6.7006 5.9472 29 6 3.2461 1.7040 4.2288 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.2538 0.6548 -2.5588 34 1 2.9319 0.9515 -2.0450 35 1 2.4891 1.2331 -4.5797 36 1 4.1080 0.4717 -4.7330 37 1 3.2833 -1.2485 -6.2080 38 1 2.2297 0.1202 -6.7016 39 1 1.0919 -2.1710 -5.8074 40 1 0.4345 -0.5957 -5.2726 41 1 3.1409 -0.9814 3.9486 42 1 1.3753 -1.2560 4.2900 43 1 0.0292 0.8592 3.1313 44 1 1.3004 1.9104 2.3646 45 1 1.6867 0.5329 6.3204 46 1 0.2070 1.0680 5.4572 47 1 0.8593 3.3036 5.4839 48 1 1.9130 2.8004 6.8329 49 1 1.6775 5.8461 6.9046 50 1 3.5744 1.9467 3.2182 51 1 4.0322 1.1730 4.7656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148880615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:56 Heat of formation + Delta-G solvation = -81.413315 kcal Electronic energy + Delta-G solvation = -30128.605667 eV Core-core repulsion = 26029.424540 eV Total energy + Delta-G solvation = -4099.181126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89055 -40.64375 -39.90276 -38.31247 -37.18847 -34.18344 -33.33642 -32.96601 -31.44523 -30.94719 -29.64948 -27.63038 -27.32023 -26.64282 -25.68706 -24.23094 -22.61794 -22.19978 -22.08793 -20.49118 -19.63157 -18.77967 -18.41496 -18.06176 -17.78176 -16.93589 -16.85898 -16.76249 -16.57028 -16.07175 -15.98306 -15.54298 -15.42475 -14.97376 -14.61311 -14.26628 -14.24439 -14.12775 -13.74292 -13.68297 -13.49832 -13.37198 -13.23888 -13.05521 -12.85129 -12.75476 -12.67406 -12.46826 -12.40262 -12.22057 -12.11503 -12.05193 -11.92473 -11.73369 -11.67437 -11.64033 -11.27912 -10.97137 -10.65414 -10.50746 -10.46084 -9.75114 -8.86048 -7.82032 -5.16766 1.47876 1.48381 1.50037 1.56270 1.56496 2.50734 2.58694 2.92612 3.25712 3.34331 3.45416 3.53720 3.65600 3.73577 3.80294 3.91563 3.93200 3.97928 4.12788 4.14391 4.21022 4.23475 4.36371 4.39692 4.42841 4.56259 4.58992 4.61502 4.66045 4.67599 4.76208 4.78917 4.79672 4.85815 4.88682 4.93196 4.98870 5.01963 5.09947 5.10917 5.14836 5.23454 5.23992 5.48342 5.75327 5.84965 5.98266 6.17293 6.23830 6.61819 7.07153 7.14694 7.80628 8.44511 9.27415 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002429 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.429976 B =11522.837588 C =12886.505655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 H 0.099 0.901 4 O -0.381 6.381 5 C 0.045 3.955 6 C 0.077 3.923 7 H 0.071 0.929 8 C -0.142 4.142 9 C -0.149 4.149 10 C 0.036 3.964 11 O -0.401 6.401 12 C 0.530 3.470 13 O -0.579 6.579 14 N -0.638 5.638 15 C 0.129 3.871 16 C -0.097 4.097 17 C 0.127 3.873 18 C -0.112 4.112 19 C 0.184 3.816 20 N -0.624 5.624 21 C -0.242 4.242 22 H 0.076 0.924 23 C -0.061 4.061 24 N -0.947 5.947 25 Si 0.973 3.027 26 H -0.276 1.276 27 H -0.294 1.294 28 H -0.282 1.282 29 C 0.159 3.841 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.019 0.981 48 H 0.004 0.996 49 H 0.247 0.753 50 H 0.033 0.967 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -9.152 -20.414 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 H 0.117 0.883 4 O -0.300 6.300 5 C -0.032 4.032 6 C 0.020 3.980 7 H 0.089 0.911 8 C -0.180 4.180 9 C -0.186 4.186 10 C -0.040 4.040 11 O -0.321 6.321 12 C 0.320 3.680 13 O -0.459 6.459 14 N -0.374 5.374 15 C 0.007 3.993 16 C -0.099 4.099 17 C 0.006 3.994 18 C -0.151 4.151 19 C 0.060 3.940 20 N -0.351 5.351 21 C -0.371 4.371 22 H 0.094 0.906 23 C -0.254 4.254 24 N -0.595 5.595 25 Si 0.802 3.198 26 H -0.202 1.202 27 H -0.220 1.220 28 H -0.208 1.208 29 C 0.034 3.966 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.037 0.963 48 H 0.022 0.978 49 H 0.056 0.944 50 H 0.052 0.948 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.919 -9.933 -20.484 23.291 hybrid contribution 0.727 1.368 0.354 1.589 sum -4.193 -8.565 -20.130 22.275 Atomic orbital electron populations 1.22154 0.91536 1.03307 1.04618 1.21892 0.96565 0.96075 0.83955 0.88332 1.88059 1.86883 1.35453 1.19570 1.23279 1.01185 0.92952 0.85742 1.22838 0.90713 0.90934 0.93549 0.91111 1.23156 1.03964 0.98774 0.92082 1.23291 0.97434 0.99612 0.98253 1.23645 0.97644 1.00939 0.81781 1.88537 1.57237 1.55782 1.30562 1.20577 0.79056 0.84283 0.84064 1.90671 1.42954 1.25699 1.86547 1.50223 1.55693 1.27017 1.04427 1.23088 1.02442 0.95527 0.78260 1.22264 0.96886 0.94721 0.95985 1.23232 0.98046 0.86833 0.91305 1.22531 1.01188 0.96240 0.95117 1.21001 0.88224 0.91810 0.93001 1.44830 1.32294 1.06762 1.51187 1.19328 1.08490 0.87196 1.22061 0.90592 1.25546 0.99134 1.01305 0.99444 1.70153 1.26534 1.30554 1.32296 0.85236 0.77632 0.79506 0.77443 1.20215 1.22023 1.20843 1.21126 0.93975 0.86793 0.94745 0.92459 0.89403 0.89616 0.91318 0.90852 0.88812 0.88275 0.90077 0.87482 0.89094 0.91418 0.90728 0.86657 0.86146 0.89935 0.90338 0.88431 0.96299 0.97777 0.94383 0.94849 0.96097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.44 71.98 0.68 -2.50 16 2 C 0.08 1.97 2.91 29.85 0.09 2.05 16 3 H 0.10 2.20 7.79 -2.39 -0.02 2.18 16 4 O -0.38 -11.28 9.51 -126.48 -1.20 -12.48 16 5 C 0.04 0.94 5.28 71.98 0.38 1.32 16 6 C 0.08 1.56 3.81 31.06 0.12 1.67 16 7 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.14 -1.65 6.56 31.91 0.21 -1.44 16 9 C -0.15 -1.46 7.16 32.10 0.23 -1.23 16 10 C 0.04 0.52 7.78 72.65 0.57 1.08 16 11 O -0.40 -9.57 11.00 -146.65 -1.61 -11.18 16 12 C 0.53 17.17 7.41 87.66 0.65 17.82 16 13 O -0.58 -24.10 17.23 15.94 0.27 -23.82 16 14 N -0.64 -17.80 3.60 -863.69 -3.11 -20.91 16 15 C 0.13 3.36 8.21 85.90 0.71 4.06 16 16 C -0.10 -2.86 0.99 -52.15 -0.05 -2.91 16 17 C 0.13 3.16 6.56 85.91 0.56 3.72 16 18 C -0.11 -3.44 6.36 31.36 0.20 -3.24 16 19 C 0.18 8.36 5.39 86.80 0.47 8.83 16 20 N -0.62 -30.45 3.41 -693.35 -2.36 -32.82 16 21 C -0.24 -13.15 10.28 84.03 0.86 -12.29 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 24 N -0.95 -54.83 10.30 21.65 0.22 -54.61 16 25 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 29 C 0.16 6.20 6.63 86.28 0.57 6.77 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.48 6.62 -2.39 -0.02 1.47 16 32 H 0.08 1.40 7.87 -2.39 -0.02 1.38 16 33 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 34 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.09 0.85 7.85 -2.39 -0.02 0.83 16 36 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 2.09 8.12 -2.38 -0.02 2.07 16 42 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.12 2.27 7.92 -2.39 -0.02 2.26 16 44 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.10 2.41 7.99 -2.39 -0.02 2.39 16 47 H 0.02 0.95 7.39 -2.39 -0.02 0.93 16 48 H 0.00 0.21 7.49 -2.39 -0.02 0.19 16 49 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 50 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 51 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.14 404.91 1.83 -75.30 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.89 Total: 13.04 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 6.70 Total: 20.83 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.25 Total: -108.33 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.54 Total: -47.49 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -77.14 1.83 -75.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148880615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.111 kcal (2) G-P(sol) polarization free energy of solvation -77.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds